Clone GM12295 Report

Search the DGRC for GM12295

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:122
Well:95
Vector:pOT2
Associated Gene/TranscriptCG14434-RA
Protein status:GM12295.pep: gold
Preliminary Size:706
Sequenced Size:735

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14434 2002-01-01 Sim4 clustering to Release 2
CG14434 2002-05-18 Blastp of sequenced clone
CG14434 2003-01-01 Sim4 clustering to Release 3
CG14434 2008-04-29 Release 5.5 accounting
CG14434 2008-08-15 Release 5.9 accounting
CG14434 2008-12-18 5.12 accounting

Clone Sequence Records

GM12295.complete Sequence

735 bp (735 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118839

> GM12295.complete
CAAAAGCGTAAACAACATGTGCGAATCGGTTACTCCGGCGGATCAGCGCA
ATGTGGAGGTGAAGGCACGGATTCCGGGTGGATCTGAGGGCTTTGAGCAG
CGCCTAATCCTGGCCAGAAACCTAAGCGGCAGCCAGGATGCGCAGTTAAT
CGAGCAGAGGGACGTCTTCTTTGAATCTCCGCTGGGTGGACGGCTTAAAT
TGCGCTACTTACAGACGCCATCGCGCTCCCAATTGGTCTACTACGATCGT
CCCGATGTGGCCGGTCCCAAGCTTTCCAAGTTCAACAAGACGGAGGTGGA
CGAACCGGAGGTGCTGGAGAAGATCCTGAGCCAGTCGAACGGCGTACTTG
GTGTCCTGGCCAAGCGACGGCACTTGTTCCTTTGCGGACAGACGCGCATC
CACCTGGACGAGGTAAAGGATCTGGGATACTTCATGGAACTGGAGGTGTG
CCTGACAGAGGATCAAACCCTCGAGGAGGGTCAAGCCATCGCCGAGAAAC
TGTCCAGGGAACTGGGTATCCAGGAGGCGGACCTCATGATCGGCTCGTAT
TTCGATGCTCTCAGAAAGCTCAATCATTAATCATTCATTTTGTATATCCT
AGTTAGGATTAGTTCTGTACCCAAAAAATGGGACTCTGTCTTGTATCATA
GAATTACCAACATTTGTTATCCATAAAACATTCTGTGAGGCAAACAAAAA
ATGTATGTATGTAAATGAAAAAAAAAAAAAAAAAA

GM12295.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-RA 730 CG14434-RA 14..730 1..717 3510 99.3 Plus
CG14434.a 1078 CG14434.a 362..1078 1..717 3510 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6744101..6744817 717..1 3585 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:21:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6851907..6852625 719..1 3520 99.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6860005..6860723 719..1 3520 99.3 Minus
Blast to na_te.dros performed on 2019-03-16 03:41:45 has no hits.

GM12295.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:42:55 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6744101..6744817 1..717 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:07:08 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 1..564 17..580 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:39:08 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 1..564 17..580 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:01:46 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 1..564 17..580 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:16:37 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 1..564 17..580 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:11:44 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RC 66..645 1..580 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:44:29 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 14..730 1..717 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:39:08 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 14..730 1..717 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:01:46 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 14..730 1..717 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:16:38 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 1..715 3..717 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:11:44 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 14..730 1..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:42:55 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
X 6851909..6852625 1..717 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:42:55 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
X 6851909..6852625 1..717 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:42:55 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
X 6851909..6852625 1..717 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:01:46 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6745942..6746658 1..717 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:51:57 Download gff for GM12295.complete
Subject Subject Range Query Range Percent Splice Strand
X 6860007..6860723 1..717 99   Minus

GM12295.hyp Sequence

Translation from 0 to 579

> GM12295.hyp
KSVNNMCESVTPADQRNVEVKARIPGGSEGFEQRLILARNLSGSQDAQLI
EQRDVFFESPLGGRLKLRYLQTPSRSQLVYYDRPDVAGPKLSKFNKTEVD
EPEVLEKILSQSNGVLGVLAKRRHLFLCGQTRIHLDEVKDLGYFMELEVC
LTEDQTLEEGQAIAEKLSRELGIQEADLMIGSYFDALRKLNH*

GM12295.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-PC 214 CG14434-PC 23..214 1..192 974 100 Plus
CG14434-PB 187 CG14434-PB 1..187 6..192 949 100 Plus
CG14434-PA 187 CG14434-PA 1..187 6..192 949 100 Plus

GM12295.pep Sequence

Translation from 16 to 579

> GM12295.pep
MCESVTPADQRNVEVKARIPGGSEGFEQRLILARNLSGSQDAQLIEQRDV
FFESPLGGRLKLRYLQTPSRSQLVYYDRPDVAGPKLSKFNKTEVDEPEVL
EKILSQSNGVLGVLAKRRHLFLCGQTRIHLDEVKDLGYFMELEVCLTEDQ
TLEEGQAIAEKLSRELGIQEADLMIGSYFDALRKLNH*

GM12295.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21413-PA 186 GF21413-PA 1..186 1..184 756 78.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17648-PA 187 GG17648-PA 1..187 1..187 922 93.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24160-PA 186 GH24160-PA 1..185 1..184 631 67.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-PB 187 CG14434-PB 1..187 1..187 949 100 Plus
CG14434-PA 187 CG14434-PA 1..187 1..187 949 100 Plus
CG14434-PC 214 CG14434-PC 28..214 1..187 949 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15295-PA 187 GI15295-PA 1..183 1..184 684 71.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13319-PA 184 GL13319-PA 3..181 5..183 711 75.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12981-PA 192 GA12981-PA 3..182 5..184 720 76.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12544-PA 187 GM12544-PA 1..187 1..187 952 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24582-PA 129 GD24582-PA 1..126 1..171 589 72.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16999-PA 187 GJ16999-PA 1..183 1..184 695 72.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25238-PA 197 GK25238-PA 1..191 1..184 709 71.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16437-PA 187 GE16437-PA 1..186 1..186 919 94.1 Plus