Clone GM12714 Report

Search the DGRC for GM12714

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:127
Well:14
Vector:pOT2
Associated Gene/TranscriptCG34310-RA
Protein status:GM12714.pep: gold
Sequenced Size:685

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG34310-RA 2009-01-19 Manual selection by Sue Celniker

Clone Sequence Records

GM12714.complete Sequence

685 bp assembled on 2009-03-10

GenBank Submission: BT071806.1

> GM12714.complete
AAACTTGTGCATTTAATGAGAAATAAATATAAATAGCCAAAGTAACCGCA
CGTGCCATGCAAATTCGTCGTCCGCGTGGTGTCACTGTTCCGCAATTGAT
GGTGGTCACGGCCATTGGGCTGCTAGGCGGTATTTACATTTGGCAACCGC
TGATTTTGAAGTACAAAAACGAGAAGAAAACCGAGGCAGAAACGCCAGCA
GTAACTGAAACTAGTGGAACCACAAAATGAGTTTCATTAACGGCTTCAAA
AGATTCGCCACAACGACGGTTGGTCTGATGGCCATCGGTATTGGATCGAC
TGTTATATTCTACACCACCCATCGCCTTGTCATCAAACCCTATCTTCTCG
AGAAACGACGCCTGGAAGCCGAGGCCAGTGCGGAGTACCTCTTCCAGCAG
GAGGTTCACTCCCAGATTGGCGAGTCAAGACCCAAACGGAGCGAATATTG
AGCCAAGGCTGCCAGTGCCGTCATAGACATCTTTACATACTTATAGCCTA
GTGATTAGTTACCAAATTTCAACGCTGTAACATGGTGAACAATGAATGGA
CTTTTACTTTCTTACCTTCACTTTGGGTGGAGAGGCCCATCTTCTTGTGT
TCATTTTAGAGTTAAACAGAATGGATTTTTTATGAAAGTAATATGAATTG
AATAAATAATGAAAAGCAAAAAAAAAAAAAAAAAA

GM12714.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG34310-RA 491 CG34310-RA 41..491 1..451 2255 100 Plus
cup-RB 4042 cup-RB 3553..3998 227..672 2215 99.7 Plus
CG34310-RB 486 CG34310-RB 41..486 1..451 2155 98.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6673361..6673801 227..667 2205 100 Plus
chr2L 23010047 chr2L 6673063..6673288 1..226 1130 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:21:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6674301..6674746 227..672 2215 99.8 Plus
2L 23513712 2L 6674003..6674228 1..226 1130 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6674301..6674746 227..672 2215 99.7 Plus
2L 23513712 2L 6674003..6674228 1..226 1130 100 Plus
Blast to na_te.dros performed on 2019-03-17 00:14:38 has no hits.

GM12714.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:15:26 Download gff for GM12714.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6673063..6673288 1..226 100 -> Plus
chr2L 6673361..6673801 227..667 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:52:27 Download gff for GM12714.complete
Subject Subject Range Query Range Percent Splice Strand
CG34310-RB 1..390 57..451 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:40:02 Download gff for GM12714.complete
Subject Subject Range Query Range Percent Splice Strand
CG34310-RB 1..390 57..451 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:33:51 Download gff for GM12714.complete
Subject Subject Range Query Range Percent Splice Strand
CG34310-RC 1..225 227..451 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:15:57 Download gff for GM12714.complete
Subject Subject Range Query Range Percent Splice Strand
CG34310-RC 1..225 227..451 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-03-10 16:16:57 Download gff for GM12714.complete
Subject Subject Range Query Range Percent Splice Strand
CG34310-RA 41..491 1..451 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:40:02 Download gff for GM12714.complete
Subject Subject Range Query Range Percent Splice Strand
CG34310-RA 41..491 1..451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:51 Download gff for GM12714.complete
Subject Subject Range Query Range Percent Splice Strand
CG34310-RA 40..706 1..667 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:57 Download gff for GM12714.complete
Subject Subject Range Query Range Percent Splice Strand
CG34310-RA 40..706 1..667 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:15:26 Download gff for GM12714.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6674003..6674228 1..226 100 -> Plus
2L 6674301..6674741 227..667 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:15:26 Download gff for GM12714.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6674003..6674228 1..226 100 -> Plus
2L 6674301..6674741 227..667 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:15:26 Download gff for GM12714.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6674003..6674228 1..226 100 -> Plus
2L 6674301..6674741 227..667 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:51 Download gff for GM12714.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6674003..6674228 1..226 100 -> Plus
arm_2L 6674301..6674741 227..667 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:14:15 Download gff for GM12714.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6674003..6674228 1..226 100 -> Plus
2L 6674301..6674741 227..667 100   Plus

GM12714.pep Sequence

Translation from 226 to 450

> GM12714.pep
MSFINGFKRFATTTVGLMAIGIGSTVIFYTTHRLVIKPYLLEKRRLEAEA
SAEYLFQQEVHSQIGESRPKRSEY*

GM12714.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG34310-PD 74 CG34310-PD 1..74 1..74 372 100 Plus
CG34310-PA 74 CG34310-PA 1..74 1..74 372 100 Plus
CG34310-PC 74 CG34310-PC 1..74 1..74 372 100 Plus
CG34310-PE 129 CG34310-PE 57..129 2..74 364 98.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17733-PA 122 GI17733-PA 63..118 1..59 192 64.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14066-PA 74 GE14066-PA 1..74 1..74 344 87.8 Plus

GM12714.hyp Sequence

Translation from 226 to 450

> GM12714.hyp
MSFINGFKRFATTTVGLMAIGIGSTVIFYTTHRLVIKPYLLEKRRLEAEA
SAEYLFQQEVHSQIGESRPKRSEY*

GM12714.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG34310-PD 74 CG34310-PD 1..74 1..74 372 100 Plus
CG34310-PA 74 CG34310-PA 1..74 1..74 372 100 Plus
CG34310-PC 74 CG34310-PC 1..74 1..74 372 100 Plus