BDGP Sequence Production Resources |
Search the DGRC for GM13002
Library: | GM |
Tissue Source: | Drosophila melanogaster ovary |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 130 |
Well: | 2 |
Vector: | pOT2 |
Associated Gene/Transcript | l(1)G0334-RA |
Protein status: | GM13002.pep: gold |
Sequenced Size: | 1727 |
Gene | Date | Evidence |
---|---|---|
l(1)G0334-RA | 2010-11-11 | Gleaning Pick By Joe Carlson |
1727 bp assembled on 2011-01-03
GenBank Submission: BT125860.1
> GM13002.complete AATCGGCCAAGTGATATATAGCGTGCGATTCTAGATCCGGACAATCCGCA TATAGAAAGCCCCCATTCACATCCAATTTCTGTCAGTCGAACGAGAATAA CACAGCGAAAATGTTGCGTACTCTGTCACGCGTTAGCGAATTGCCCATTA TTGTTAAGCAACTGCAAAAAAATGCAGCCCAAGCAGGTGTTTCGAAAACC AACAATTATGCCACGGAGGCCACCGTTCAAGTGAATCGGCCCTTCAAGCT GCACCGCCTGGACGAAGGACCCGCCACGGAAGTGAAGCTGACCAAGGATC AGGCCCTTAAGTACTACACACAGATGCAGACGATCCGTCGGTTGGAGACG GCCGCCGGTAATCTGTACAAGGAGAAGATCATTCGCGGCTTCTGTCATCT GTATTCCGGCCAGGAGGCATGCGCCGTTGGCATGAAGGCGGCGATGCGGG ATGTGGACAACATCATATCGGCGTACCGTGTCCACGGATGGACCTACCTG ATGGGCGTCTCACCCAGCGGCGTACTGGCTGAGCTCACCGGTGTCCAGGG TGGCTGTGCCCGCGGCAAGGGTGGCTCCATGCACATGTACGCACCGAACT TCTACGGAGGCAATGGCATCGTGGGTGCTCAAGTTCCTTTGGGCGCCGGC GTTGGCTTGGCCTGCAAGTACAAGGGCAATGGCGGCATGTGCCTGGCCCT CTACGGTGATGGTGCCGCCAATCAGGGACAGGTGTTCGAGGCCTACAACA TGGCCTACCTGTGGAAACTGCCTGTGATCTTTGTCTGCGAGAACAACAAC TACGGAATGGGTACCAGTTCTGAGCGTGCTTCCTGCAACACTGATTACTA TACCCGCGGCGACGCTCTGCCCGGAATCTGGGTGGACGGCATGGATGTGC TGGCCGTGCGCAGCGCCACCGAGTTCGCCATCAACTATGTGAACACTCAC GGACCTTTGGTGATGGAGACGAACACGTACCGATACTCTGGACACTCCAT GTCCGATCCGGGCACATCGTACCGCACACGCGAGGAGATCCAGGAGGTGC GCCAGAAGCGTGATCCCATCACCTCCTTCAAGGAGCTGTGCATCGAGCTG GGTCTGATTACCACCGATGAAGTTAAGGCCATCGATCTGAAGGTACGCAA GGAGGTCGACGAGGCCACCGCCTTCGCCAAGTCCGATGCCGAGCTGGGCG TGAGCCACCTCTGGACGGACGTGTACTCCAACAATCTGGAGCCCAAGCTG CGCGGCACCATCGCCTACGATATTGATCACATCCAGGAGCGCAAGGGCGT CAATCACTAAGTCATCGGGCCAACGAATCTGATTCGGGAACTCACAAGAA CCTTAAACGAAACAAGAAAACCGAACAGCAAACACAAATCACTGACAGAC AGACAAGAAGACACAATAACTCAGAAACTTGGACACAAGCGAAATCTCTA GATCATAAGCCGAAAGTTGAACGATGAGAACCCCGTAGAACGGAACGGAT CCGAAGAGACCCACAAAAAGCTTAGCTAATCGGAGCACTCCAACCACACA TCGTAGCGCACCACATAACTCTGGGGTACTGCATTGGATATTATATTGCG AACGTGTTCAATAAGGATAAAGCGAGGTGTAAATTGTTGAAAATATAAAA ATCTAGAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 4596337..4596903 | 239..805 | 2835 | 100 | Plus |
chrX | 22417052 | chrX | 4597369..4597906 | 1126..1663 | 2690 | 100 | Plus |
chrX | 22417052 | chrX | 4596977..4597301 | 804..1128 | 1625 | 100 | Plus |
chrX | 22417052 | chrX | 4595223..4595380 | 13..170 | 790 | 100 | Plus |
chrX | 22417052 | chrX | 4595607..4595675 | 171..239 | 345 | 100 | Plus |
chrX | 22417052 | chrX | 4599113..4599578 | 560..1025 | 295 | 71.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 4703554..4704120 | 239..805 | 2760 | 99.1 | Plus |
X | 23542271 | X | 4704586..4705125 | 1126..1665 | 2700 | 100 | Plus |
X | 23542271 | X | 4704194..4704518 | 804..1128 | 1610 | 99.7 | Plus |
X | 23542271 | X | 4702434..4702591 | 13..170 | 790 | 100 | Plus |
X | 23542271 | X | 4702824..4702892 | 171..239 | 345 | 100 | Plus |
X | 23542271 | X | 4706325..4706790 | 560..1025 | 295 | 71.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 4711652..4712218 | 239..805 | 2760 | 99.1 | Plus |
X | 23527363 | X | 4712684..4713223 | 1126..1665 | 2700 | 100 | Plus |
X | 23527363 | X | 4712292..4712616 | 804..1128 | 1610 | 99.6 | Plus |
X | 23527363 | X | 4710532..4710689 | 13..170 | 790 | 100 | Plus |
X | 23527363 | X | 4710922..4710990 | 171..239 | 345 | 100 | Plus |
2R | 25260384 | 2R | 5909869..5909934 | 1705..1640 | 195 | 86.3 | Minus |
X | 23527363 | X | 4714557..4714627 | 694..764 | 190 | 84.5 | Plus |
3L | 28103327 | 3L | 1507039..1507103 | 1640..1704 | 190 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 966..1005 | 166..206 | 121 | 80.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 4595224..4595380 | 14..170 | 100 | -> | Plus |
chrX | 4595607..4595675 | 171..239 | 100 | -> | Plus |
chrX | 4596338..4596902 | 240..804 | 100 | -> | Plus |
chrX | 4596978..4597300 | 805..1127 | 100 | -> | Plus |
chrX | 4597371..4597906 | 1128..1663 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)G0334-RD | 1..1200 | 111..1310 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)G0334-RA | 1..1200 | 111..1310 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)G0334-RA | 1..1200 | 111..1310 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)G0334-RA | 160..1813 | 7..1663 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)G0334-RD | 5..1667 | 1..1663 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)G0334-RD | 5..1667 | 1..1663 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4702431..4702591 | 7..170 | 98 | -> | Plus |
X | 4702824..4702892 | 171..239 | 100 | -> | Plus |
X | 4703555..4704119 | 240..804 | 99 | -> | Plus |
X | 4704195..4704517 | 805..1127 | 99 | -> | Plus |
X | 4704588..4705123 | 1128..1663 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4702431..4702591 | 7..170 | 98 | -> | Plus |
X | 4702824..4702892 | 171..239 | 100 | -> | Plus |
X | 4703555..4704119 | 240..804 | 99 | -> | Plus |
X | 4704195..4704517 | 805..1127 | 99 | -> | Plus |
X | 4704588..4705123 | 1128..1663 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4702431..4702591 | 7..170 | 98 | -> | Plus |
X | 4702824..4702892 | 171..239 | 100 | -> | Plus |
X | 4703555..4704119 | 240..804 | 99 | -> | Plus |
X | 4704195..4704517 | 805..1127 | 99 | -> | Plus |
X | 4704588..4705123 | 1128..1663 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 4596464..4596624 | 7..170 | 98 | -> | Plus |
arm_X | 4596857..4596925 | 171..239 | 100 | -> | Plus |
arm_X | 4597588..4598152 | 240..804 | 99 | -> | Plus |
arm_X | 4598228..4598550 | 805..1127 | 99 | -> | Plus |
arm_X | 4598621..4599156 | 1128..1663 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4711653..4712217 | 240..804 | 99 | -> | Plus |
X | 4712293..4712615 | 805..1127 | 99 | -> | Plus |
X | 4712686..4713221 | 1128..1663 | 100 | Plus | |
X | 4710529..4710689 | 7..170 | 98 | -> | Plus |
X | 4710922..4710990 | 171..239 | 100 | -> | Plus |
Translation from 9 to 1309
> GM13002.hyp RYIACDSRSGQSAYRKPPFTSNFCQSNENNTAKMLRTLSRVSELPIIVKQ LQKNAAQAGVSKTNNYATEATVQVNRPFKLHRLDEGPATEVKLTKDQALK YYTQMQTIRRLETAAGNLYKEKIIRGFCHLYSGQEACAVGMKAAMRDVDN IISAYRVHGWTYLMGVSPSGVLAELTGVQGGCARGKGGSMHMYAPNFYGG NGIVGAQVPLGAGVGLACKYKGNGGMCLALYGDGAANQGQVFEAYNMAYL WKLPVIFVCENNNYGMGTSSERASCNTDYYTRGDALPGIWVDGMDVLAVR SATEFAINYVNTHGPLVMETNTYRYSGHSMSDPGTSYRTREEIQEVRQKR DPITSFKELCIELGLITTDEVKAIDLKVRKEVDEATAFAKSDAELGVSHL WTDVYSNNLEPKLRGTIAYDIDHIQERKGVNH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(1)G0334-PD | 399 | CG7010-PD | 1..399 | 34..432 | 2097 | 100 | Plus |
l(1)G0334-PA | 399 | CG7010-PA | 1..399 | 34..432 | 2097 | 100 | Plus |
l(1)G0334-PC | 443 | CG7010-PC | 1..443 | 34..432 | 2042 | 90.1 | Plus |
l(1)G0334-PB | 328 | CG7010-PB | 1..328 | 105..432 | 1744 | 100 | Plus |
CG7024-PA | 479 | CG7024-PA | 43..390 | 78..425 | 1142 | 59.8 | Plus |
Translation from 110 to 1309
> GM13002.pep MLRTLSRVSELPIIVKQLQKNAAQAGVSKTNNYATEATVQVNRPFKLHRL DEGPATEVKLTKDQALKYYTQMQTIRRLETAAGNLYKEKIIRGFCHLYSG QEACAVGMKAAMRDVDNIISAYRVHGWTYLMGVSPSGVLAELTGVQGGCA RGKGGSMHMYAPNFYGGNGIVGAQVPLGAGVGLACKYKGNGGMCLALYGD GAANQGQVFEAYNMAYLWKLPVIFVCENNNYGMGTSSERASCNTDYYTRG DALPGIWVDGMDVLAVRSATEFAINYVNTHGPLVMETNTYRYSGHSMSDP GTSYRTREEIQEVRQKRDPITSFKELCIELGLITTDEVKAIDLKVRKEVD EATAFAKSDAELGVSHLWTDVYSNNLEPKLRGTIAYDIDHIQERKGVNH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22274-PA | 399 | GF22274-PA | 1..399 | 1..399 | 2095 | 96.5 | Plus |
Dana\GF15055-PA | 403 | GF15055-PA | 41..399 | 39..395 | 1173 | 60.2 | Plus |
Dana\GF22275-PA | 520 | GF22275-PA | 55..401 | 45..391 | 1143 | 58.8 | Plus |
Dana\GF18476-PA | 439 | GF18476-PA | 128..412 | 100..377 | 283 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18722-PA | 440 | GG18722-PA | 1..440 | 1..399 | 2102 | 90.5 | Plus |
Dere\GG18723-PA | 480 | GG18723-PA | 43..390 | 45..392 | 1162 | 59.8 | Plus |
Dere\GG16874-PA | 439 | GG16874-PA | 128..408 | 100..373 | 272 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12828-PA | 399 | GH12828-PA | 1..399 | 1..399 | 2032 | 93.2 | Plus |
Dgri\GH20215-PA | 513 | GH20215-PA | 31..384 | 37..390 | 1185 | 59.9 | Plus |
Dgri\GH18279-PA | 439 | GH18279-PA | 127..412 | 99..377 | 298 | 31.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pdha-PD | 399 | CG7010-PD | 1..399 | 1..399 | 2097 | 100 | Plus |
Pdha-PA | 399 | CG7010-PA | 1..399 | 1..399 | 2097 | 100 | Plus |
Pdha-PC | 443 | CG7010-PC | 1..443 | 1..399 | 2042 | 90.1 | Plus |
Pdha-PB | 328 | CG7010-PB | 1..328 | 72..399 | 1744 | 100 | Plus |
CG7024-PA | 479 | CG7024-PA | 43..390 | 45..392 | 1142 | 59.8 | Plus |
CG8199-PA | 439 | CG8199-PA | 128..388 | 100..349 | 262 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14910-PA | 399 | GI14910-PA | 1..399 | 1..399 | 2023 | 94 | Plus |
Dmoj\GI14124-PA | 420 | GI14124-PA | 30..419 | 9..399 | 1262 | 58.5 | Plus |
Dmoj\GI14911-PA | 461 | GI14911-PA | 6..353 | 43..390 | 1175 | 59.5 | Plus |
Dmoj\GI24087-PA | 435 | GI24087-PA | 124..405 | 100..374 | 305 | 31.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13094-PA | 399 | GL13094-PA | 1..399 | 1..399 | 2075 | 95.5 | Plus |
Dper\GL18702-PA | 414 | GL18702-PA | 61..412 | 45..396 | 1203 | 64.2 | Plus |
Dper\GL13095-PA | 540 | GL13095-PA | 58..410 | 38..390 | 1173 | 60.1 | Plus |
Dper\GL22326-PA | 439 | GL22326-PA | 128..412 | 100..377 | 282 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20028-PA | 399 | GA20028-PA | 1..399 | 1..399 | 2068 | 95.2 | Plus |
Dpse\GA25763-PA | 414 | GA25763-PA | 61..412 | 45..396 | 1214 | 64.5 | Plus |
Dpse\GA20040-PA | 533 | GA20040-PA | 58..410 | 38..390 | 1175 | 60.1 | Plus |
Dpse\GA20891-PA | 439 | GA20891-PA | 128..412 | 100..377 | 282 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12361-PA | 441 | GM12361-PA | 1..441 | 1..399 | 2099 | 90.5 | Plus |
Dsec\GM12362-PA | 475 | GM12362-PA | 34..389 | 37..392 | 1170 | 58.4 | Plus |
Dsec\GM23814-PA | 439 | GM23814-PA | 128..388 | 100..349 | 255 | 30.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16702-PA | 392 | GD16702-PA | 1..392 | 1..399 | 2088 | 97.7 | Plus |
Dsim\GD16703-PA | 476 | GD16703-PA | 35..390 | 37..392 | 1170 | 58.4 | Plus |
Dsim\GD18623-PA | 439 | GD18623-PA | 128..388 | 100..349 | 256 | 30.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18942-PA | 399 | GJ18942-PA | 1..399 | 1..399 | 2011 | 93 | Plus |
Dvir\GJ17759-PA | 420 | GJ17759-PA | 58..419 | 39..399 | 1258 | 61.3 | Plus |
Dvir\GJ18943-PA | 548 | GJ18943-PA | 46..399 | 37..390 | 1214 | 60.7 | Plus |
Dvir\GJ10905-PA | 437 | GJ10905-PA | 126..405 | 100..372 | 287 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25306-PA | 474 | GK25306-PA | 93..474 | 21..399 | 1981 | 94.8 | Plus |
Dwil\GK15549-PA | 430 | GK15549-PA | 70..426 | 38..394 | 1250 | 63 | Plus |
Dwil\GK25307-PA | 632 | GK25307-PA | 47..409 | 28..392 | 1178 | 58.4 | Plus |
Dwil\GK11824-PA | 439 | GK11824-PA | 128..412 | 100..377 | 285 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16361-PA | 438 | GE16361-PA | 1..438 | 1..399 | 2102 | 91.1 | Plus |
Dyak\GE16362-PA | 485 | GE16362-PA | 43..390 | 45..392 | 1156 | 58.6 | Plus |
Dyak\GE25960-PA | 439 | GE25960-PA | 128..408 | 100..373 | 272 | 29.9 | Plus |