Clone GM13032 Report

Search the DGRC for GM13032

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:130
Well:32
Vector:pOT2
Associated Gene/TranscriptCG6983-RA
Protein status:GM13032.pep: gold
Preliminary Size:1300
Sequenced Size:1280

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6983 2001-01-01 Release 2 assignment
CG6983 2002-03-19 Blastp of sequenced clone
CG6983 2003-01-01 Sim4 clustering to Release 3
CG6983 2008-04-29 Release 5.5 accounting
CG6983 2008-08-15 Release 5.9 accounting
CG6983 2008-12-18 5.12 accounting

Clone Sequence Records

GM13032.complete Sequence

1280 bp (1280 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094768

> GM13032.complete
ATTTAAATCACCTCGCTGCGAAAATCGGGAAATTCTAAAGAAGCGCGTCG
TCTGTTTAAATTCTGAGGGTTCGCAAAATCGCTGGCATTTAACACTACCA
CCAAAAAAAAACCAAAACAAATCAAGAGCTGCGAATCTACGGATCCTCAA
AATGTGCGACGAGTCCATTGAAAATGTGGAGCATCAAGACCACCATGTGC
ACTTCGACACGAACACGGTGAAGGATGACTTCGAATCGGACAGCTGTGTG
ACATACCAAAGGTCTGGTGACACGATTGTGGTGAGCCTGGGCTTTCTGCA
GATCAGGCATCGCTATCTGATCGAACTGAAGCTGCCGACGTCGCTATTCG
GCGATGCCAAGACGCTGGCCAGCAAATTTGAGCCGGTGATTAGCGCCACG
CCGAGCTTGCACTGCAGGATCACGGAGTTCGAGGGCACCAAGCATGATGA
GCACGACTTTTTCGAAATGAAAATCGAGTTCTTTGCCTACAAGGAGAAGC
TGTTGCGCGAGGTCCTGCACATTGTCAGCTCATCGAACGCCAAGGAGCTG
CTACAGCTGGTCATAGCCGCTCGGGTGTTGGGCAAGGGCAAGGGTACTCC
TATGCTGCGGACTGGAATCCATTGCATCGGCGTCGAGAGGGATGACGATG
AGTCGGAGGCGTCGGATTTCGCTGGCTTCGACAGCAAGCCCTAAGATGGC
AACCCAATTCTCGCCTTGCCGCAACTTGTTTTCTTAGTTAATTGCAAATA
TCTGCATAGTTCTTAAGTGAAAGAGAAGAGAATAATATGTAACATTAGTT
ATTACCTACAAGTTATCGTGTACGTAAATTCATTGAGCATTTACATTTAG
ATTTCGGTTTCACTTTTGCTTCGTGTACTTAACATTTGTAAAATAATCGT
GTACGTGTTTGTGTTACACGTGAGTGGGCGAACTGCCAAATATACTTGAC
ATTTTTATTGATATTCAAGACCGTGTTATGTCCCAAATTCTTGATTTTGC
CACTAAGATTAAAATGTTAAACAGTTTGTCTTCAAATGAATATTGAAATG
TATTAAAGCCATGTAAGCTGAGGAAATTTCATGCCCTTTTAAGCAATGGA
CAGTTTTAATAGCCTATAGCTAAACGGGTTTTTAAAATTTTAAAATTTCG
CTGTACATACATAAAGACGTATTTATTTATATTCCATATAAACTGCACCA
TACACAACAAATATTGTCACAAAAATATATGTTTGAAATATATCCCTAGA
ACAACACAGAGAAAAAAAAAAAAAAAAAAA

GM13032.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6983.a 1996 CG6983.a 98..1359 1..1262 6310 100 Plus
CG6983-RA 1880 CG6983-RA 105..1366 1..1262 6310 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8435472..8436540 1261..184 5080 98.5 Minus
chr3L 24539361 chr3L 8441145..8441332 188..1 940 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:21:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8443479..8444557 1262..184 5395 100 Minus
3L 28110227 3L 8449149..8449336 188..1 940 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8436579..8437657 1262..184 5395 100 Minus
3L 28103327 3L 8442249..8442436 188..1 940 100 Minus
Blast to na_te.dros performed 2019-03-15 19:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 1175..1270 1254..1157 115 61.6 Minus

GM13032.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:52:47 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8435472..8436535 189..1261 98 <- Minus
chr3L 8441145..8441332 1..188 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:07:16 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 1..543 152..694 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:29:19 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 1..543 152..694 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:59:41 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 1..543 152..694 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:03:23 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 1..543 152..694 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:40 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 1..543 152..694 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:55:41 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 37..1297 1..1261 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:29:18 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 37..1297 1..1261 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:59:41 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 42..1302 1..1261 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:03:23 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 37..1297 1..1261 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:40 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 42..1302 1..1261 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:47 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8443480..8444552 189..1261 100 <- Minus
3L 8449149..8449336 1..188 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:47 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8443480..8444552 189..1261 100 <- Minus
3L 8449149..8449336 1..188 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:47 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8443480..8444552 189..1261 100 <- Minus
3L 8449149..8449336 1..188 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:59:41 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8442249..8442436 1..188 100   Minus
arm_3L 8436580..8437652 189..1261 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:36:56 Download gff for GM13032.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8436580..8437652 189..1261 100 <- Minus
3L 8442249..8442436 1..188 100   Minus

GM13032.hyp Sequence

Translation from 0 to 693

> GM13032.hyp
FKSPRCENREILKKRVVCLNSEGSQNRWHLTLPPKKNQNKSRAANLRILK
MCDESIENVEHQDHHVHFDTNTVKDDFESDSCVTYQRSGDTIVVSLGFLQ
IRHRYLIELKLPTSLFGDAKTLASKFEPVISATPSLHCRITEFEGTKHDE
HDFFEMKIEFFAYKEKLLREVLHIVSSSNAKELLQLVIAARVLGKGKGTP
MLRTGIHCIGVERDDDESEASDFAGFDSKP*

GM13032.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6983-PB 180 CG6983-PB 1..180 51..230 939 100 Plus
CG6983-PA 180 CG6983-PA 1..180 51..230 939 100 Plus

GM13032.pep Sequence

Translation from 151 to 693

> GM13032.pep
MCDESIENVEHQDHHVHFDTNTVKDDFESDSCVTYQRSGDTIVVSLGFLQ
IRHRYLIELKLPTSLFGDAKTLASKFEPVISATPSLHCRITEFEGTKHDE
HDFFEMKIEFFAYKEKLLREVLHIVSSSNAKELLQLVIAARVLGKGKGTP
MLRTGIHCIGVERDDDESEASDFAGFDSKP*

GM13032.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10165-PA 182 GF10165-PA 1..182 1..180 857 90.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15080-PA 180 GG15080-PA 1..180 1..180 944 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16155-PA 193 GH16155-PA 24..193 11..180 739 83 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6983-PB 180 CG6983-PB 1..180 1..180 939 100 Plus
CG6983-PA 180 CG6983-PA 1..180 1..180 939 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12427-PA 181 GI12427-PA 14..181 13..180 689 82.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15572-PA 179 GL15572-PA 1..179 1..180 807 85.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20004-PA 179 GA20004-PA 1..179 1..180 807 85.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24937-PA 180 GM24937-PA 1..180 1..180 948 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12988-PA 180 GD12988-PA 1..180 1..180 948 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12323-PA 169 GJ12323-PA 1..169 12..180 695 82.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20545-PA 183 GK20545-PA 1..183 1..180 795 83.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21304-PA 180 GE21304-PA 1..180 1..180 944 99.4 Plus