Clone GM13038 Report

Search the DGRC for GM13038

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:130
Well:38
Vector:pOT2
Associated Gene/TranscriptATPsyn-b-RB
Protein status:GM13038.pep: wuzgold
Preliminary Size:1367
Sequenced Size:1172

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8189 2001-01-01 Release 2 assignment
CG8189 2003-01-01 Sim4 clustering to Release 3
CG8189 2003-02-22 Blastp of sequenced clone
ATPsyn-b 2008-04-29 Release 5.5 accounting
ATPsyn-b 2008-08-15 Release 5.9 accounting
ATPsyn-b 2008-12-18 5.12 accounting

Clone Sequence Records

GM13038.complete Sequence

1172 bp (1172 high quality bases) assembled on 2003-02-22

GenBank Submission: BT004878

> GM13038.complete
ACAATTTCGGGTGAATTTAGTAGCATAAATTCGTCGCAACTGCCTGGAAA
ATGTTCTCGAGAGCCGCTCTTCTAACAGGTAAATCTGCAAACCATGCTAA
TAGCTGCCCAGCTAATCGGTGTACGCTAATCGTGCGGTGGGCAAGTGAAT
CTCCGGCCGCGAATGACCGTGAAAATTGTTACGGCATTGCAAAGTCGTCG
GACATCGTGGTTTATGTAATCACCACCCATTCGCAATGGATATTTTTTGC
AACTAAAATGTAGCGTACAACTAATTGGTGAACTGCACTTTCAGCCCAGC
GCCCCTTGACCGTGGCCGCCACCCGGTCGGCAGCCGCTGCTGCCGCTCCT
GGCGGAGCCATCGAGCGCCGCCAGCGCCCCGAGCATCCCGGCAAGGTCCG
TCTGGGATTCCTGCCCGAGGAGTGGTTCCAGTTCTTCTACAACAAGACCG
GTGTCACCGGACCCTACACCTTCGGCGTGGGTCTGATCACCTATCTCTGC
TCCAAGGAGATCTACGTCATGGAGCACGAGTACTACAGCGGTCTGTCGCT
CGGTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCA
AGTGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGA
CGCGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAA
GGAGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGG
AGAACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAAT
GTGTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCA
CGTCGAGCGTCGCCTTAGCCAGAAGCACATGGTCAACTGGATCACCACCA
ATGTGTTGGCCAGCATCTCTCCCCAGCAGGAGAAGGAGACTCTCAACAAG
TGCATCGCCGATCTGAGCGCTCTGGCACTGCGCGTCAAGTCTGCCTAAAC
GATTCGAGTTTTAGTTGTTTATTTGTAAATTAAAACCCATTCGAGACGCT
GGAACCATGAATATGCCCGAAAGATGATAAATCGATCCAATATATCTTCA
AAATGTCCGTGTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

GM13038.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-RB 1165 ATPsyn-b-RB 42..1160 1..1119 5595 100 Plus
ATPsyn-b.a 1075 ATPsyn-b.a 240..1067 292..1119 4140 100 Plus
ATPsyn-b-RA 994 ATPsyn-b-RA 159..986 292..1119 4140 100 Plus
ATPsyn-b.a 1075 ATPsyn-b.a 165..242 1..78 390 100 Plus
ATPsyn-b-RA 994 ATPsyn-b-RA 84..161 1..78 390 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9721872..9722494 1..623 3115 100 Plus
chr3L 24539361 chr3L 9722587..9723078 624..1115 2460 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:21:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9730018..9730640 1..623 3115 100 Plus
3L 28110227 3L 9730733..9731228 624..1119 2480 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9723118..9723740 1..623 3115 100 Plus
3L 28103327 3L 9723833..9724328 624..1119 2480 100 Plus
Blast to na_te.dros performed on 2019-03-16 13:21:54 has no hits.

GM13038.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:23:12 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9721872..9722494 1..623 100 -> Plus
chr3L 9722587..9723078 624..1115 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:07:17 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 22..732 288..998 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:49:08 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 22..732 288..998 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:18:13 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 22..732 288..998 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:31 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 22..732 288..998 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:17:56 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 22..732 288..998 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:01:44 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RB 42..1148 1..1107 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:49:08 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RB 42..1156 1..1115 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:13 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 91..918 288..1115 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:31 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RB 42..1148 1..1107 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:56 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 91..918 288..1115 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:23:12 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9730018..9730640 1..623 100 -> Plus
3L 9730733..9731224 624..1115 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:23:12 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9730018..9730640 1..623 100 -> Plus
3L 9730733..9731224 624..1115 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:23:12 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9730018..9730640 1..623 100 -> Plus
3L 9730733..9731224 624..1115 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:13 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9723118..9723740 1..623 100 -> Plus
arm_3L 9723833..9724324 624..1115 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:55 Download gff for GM13038.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9723118..9723740 1..623 100 -> Plus
3L 9723833..9724324 624..1115 100   Plus

GM13038.pep Sequence

Translation from 518 to 997

> GM13038.pep
MEHEYYSGLSLGIMAIIAVKKLGPVIAKWADGEIDKIESEWKEGREAELK
VLSDAIEAEKKEQWRADGALLLMEAKKENIALQLEAAFRERAMNVYSEVK
RRLDYQVECRHVERRLSQKHMVNWITTNVLASISPQQEKETLNKCIADLS
ALALRVKSA*

GM13038.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24674-PA 245 GF24674-PA 87..245 1..159 816 98.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15409-PA 243 GG15409-PA 85..243 1..159 816 98.1 Plus
Dere\GG13783-PA 151 GG13783-PA 80..142 1..62 135 47.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15429-PA 246 GH15429-PA 88..246 1..159 768 91.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsynB-PA 243 CG8189-PA 85..243 1..159 799 100 Plus
CG17300-PA 152 CG17300-PA 80..133 1..53 142 55.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13031-PA 245 GI13031-PA 87..245 1..159 744 93.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16292-PA 245 GL16292-PA 87..245 1..159 814 97.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20881-PA 245 GA20881-PA 87..245 1..159 814 97.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25183-PA 243 GM25183-PA 85..243 1..159 823 99.4 Plus
Dsec\GM24609-PA 152 GM24609-PA 80..133 1..53 150 57.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14214-PA 243 GD14214-PA 85..243 1..159 823 99.4 Plus
Dsim\GD12675-PA 141 GD12675-PA 69..122 1..53 149 57.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12126-PA 246 GJ12126-PA 87..243 1..157 771 92.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10957-PA 243 GK10957-PA 85..243 1..159 789 95 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20875-PA 243 GE20875-PA 85..243 1..159 819 98.7 Plus
Dyak\GE20077-PA 73 GE20077-PA 1..54 1..53 144 57.4 Plus

GM13038.hyp Sequence

Translation from 518 to 997

> GM13038.hyp
MEHEYYSGLSLGIMAIIAVKKLGPVIAKWADGEIDKIESEWKEGREAELK
VLSDAIEAEKKEQWRADGALLLMEAKKENIALQLEAAFRERAMNVYSEVK
RRLDYQVECRHVERRLSQKHMVNWITTNVLASISPQQEKETLNKCIADLS
ALALRVKSA*

GM13038.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-PA 243 CG8189-PA 85..243 1..159 799 100 Plus
CG17300-PA 152 CG17300-PA 80..133 1..53 142 55.6 Plus