Clone GM13131 Report

Search the DGRC for GM13131

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:131
Well:31
Vector:pOT2
Associated Gene/TranscriptSix4-RA
Protein status:GM13131.pep: gold
Sequenced Size:1858

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3871 2005-10-24 Manual selection by Joe Carlson
Six4 2008-04-29 Release 5.5 accounting
Six4 2008-04-29 Picked prior to 5.5
Six4 2008-08-15 Release 5.9 accounting
Six4 2008-12-18 5.12 accounting

Clone Sequence Records

GM13131.complete Sequence

1858 bp assembled on 2007-12-14

GenBank Submission: BT031315

> GM13131.complete
TTTGAAGAGCGGTCGCGTCCAGTCGCTGGGAAGAATCGGTCCCGGAAAAT
AACTAAATAAATTCAAAGTTCCTGGCATATTATTAAATAACAATCAAACA
GAATATCGAGTCAGCAACAAGTTTAAAATAAGATATGTTCACAAAATATA
GCTAAATAATCTTTAGACAAGTGAATGCAGTTTAGTGATTCAACTGATCA
AGTCAAAGCAACACAAATTGGGATTAACCGAGTGATTTAAGACAAGTCAA
TTTAAGGATAGTTCGATTGACCTAAAGTTTCAAAGCAATTAAAACAGTTA
CCAAAGTGCAAAGTAAAATAGTATAAAAACATTATAGTTCTATAAAATGT
ACAATGTGGAACGAAACTAAAATGATAAACTGAAATAAAAATATAAAAAC
AAAGAGAGAAAAAATATAAAAACTAATCCAATAAAAGTTAACAACCAATC
TGAACTTTGTTCAGTAAATCGGTGTTGCATTATGTTTGACAAGAATTTGG
ACGGCAACAATCTGTCGGTCTCCATCGGTGGGGATTTGGATTCGACGAGT
TCCGGCGGCACATCCTCGGATCACTCGGCTGTCCATCAGGACAATCTCAG
CTCGCCGATGGCCTACGGATCCCTCTTCCTCCCAAATGCTGGTTATCGTG
GCAACCTGTCATGCAAAACGGTCCTGCAGCTGGACAAGTTCGCACCCTAC
GAGGGTGTGGAGAAGGATCACCTGCTGGAGCGGCGGTTTCAGGACATCAC
CAATGACTACGACAAGTCGCCGCCGCCCACCGCCTCGACCACGCCCACGC
ACTATCCCAGCCTGAACAGCATAATATTTGAGAATGGGAGCAGTGGCAAC
CTGGGCGATCTCAACGGGAACACGAAGACGGATCTATGCGCCGGCCTGCA
GAGAAGTGGCGGCGGATTGGGGGGCAATGCCGGCAGTGGTGGCCACCTCA
TATCCAATCTCACAGCCGCCCACAACATGTCCGCCGTGAGCAGCTTTCCT
ATCGACGCCAAGATGCTGCAGTTCTCCACGGATCAGATCCAGTGCATGTG
CGAGGCACTGCAGCAGAAGGGCGACATCGAGAAGCTGACCACATTCCTCT
GCAGCCTGCCGCCCAGCGAGTTCTTCAAGACCAACGAGAGTGTCCTGCGG
GCCCGCGCCATGGTGGCCTACAATCTGGGCCAGTTCCACGAGCTGTACAA
CCTGCTGGAGACGCACTGCTTTTCGATCAAGTACCACGTGGACCTGCAGA
ACCTCTGGTTCAAGGCCCACTACAAGGAGGCCGAGAAGGTGCGTGGCCGA
CCACTGGGCGCCGTGGACAAGTACCGTCTGCGCAAGAAGTATCCCCTGCC
CAAGACGATCTGGGATGGCGAGGAGACGGTCTACTGCTTCAAGGAGAAGT
CGCGCAACGCTCTCAAGGACTGCTACCTGACCAACCGCTATCCCACCCCC
GACGAGAAGAAGACGCTGGCCAAGAAGACCGGGCTCACGCTCACCCAGGT
CTCCAACTGGTTCAAGAATCGTCGACAGCGGGATCGCACGCCCCAGCAAA
GACCGGACATCATGTCGGTGCTGCCCGTGGGCCAACTGGATGGCAATGGA
TTCCCGCGCATGTTCAATGCTCCAAGCTATTATCCCGAAACGATTTTCAA
TGGGCAATAAACTGCGATGTGAGGAGGCTGTTTTTGTGTAAATAAAGTGT
AATGCGTTTGTATGTTAGGACACAGGCAACTGGAAAGTGGCCATCAAATG
GCCATCTTTGTTAGCTCTAGAATTAACCAATTTTTGCTTTATGTACTGTA
TAACTTGAATAATAAACAAATGACATTAGATCAACAAATGAAAAAAAAAA
AAAAAAAA

GM13131.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
Six4-RB 1846 Six4-RB 7..1846 1..1840 9125 99.7 Plus
Six4-RA 1846 Six4-RA 7..1846 1..1840 9125 99.7 Plus
Optix-RA 2357 Optix-RA 687..820 1263..1396 340 83.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20781145..20781787 643..1 3200 99.8 Minus
chr3L 24539361 chr3L 20779154..20779674 1555..1035 2590 99.8 Minus
chr3L 24539361 chr3L 20779739..20780134 1036..641 1950 99.5 Minus
chr3L 24539361 chr3L 20777905..20778190 1840..1555 1415 99.7 Minus
chr2R 21145070 chr2R 3921703..3921792 1307..1396 210 82.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:22:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20792126..20792768 643..1 3200 99.8 Minus
3L 28110227 3L 20790135..20790655 1555..1035 2590 99.8 Minus
3L 28110227 3L 20790720..20791115 1036..641 1950 99.5 Minus
3L 28110227 3L 20788884..20789171 1842..1555 1425 99.7 Minus
2R 25286936 2R 8034290..8034379 1307..1396 210 82.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20785226..20785868 643..1 3200 99.8 Minus
3L 28103327 3L 20783235..20783755 1555..1035 2590 99.8 Minus
3L 28103327 3L 20783820..20784215 1036..641 1950 99.4 Minus
3L 28103327 3L 20781984..20782271 1842..1555 1425 99.6 Minus
2R 25260384 2R 8035489..8035578 1307..1396 210 82.2 Plus
2R 25260384 2R 8034578..8034623 1263..1308 140 86.9 Plus
Blast to na_te.dros performed 2019-03-16 05:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6825..7032 286..495 136 54.5 Plus
roo 9092 roo DM_ROO 9092bp 8380..8544 46..222 127 57.1 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 6716..7059 75..425 120 52.8 Plus

GM13131.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:32:15 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20777905..20778190 1555..1840 99 <- Minus
chr3L 20779155..20779672 1037..1554 99 <- Minus
chr3L 20779739..20780133 642..1036 99 <- Minus
chr3L 20781147..20781787 1..641 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:07:25 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
Six4-RB 1..1179 482..1660 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:02:17 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
Six4-RB 1..1179 482..1660 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:20:15 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
Six4-RA 1..1179 482..1660 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:47:37 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
Six4-RB 1..1179 482..1660 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:06:43 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
Six4-RA 1..1179 482..1660 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:48:17 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
Six4-RA 1..1840 1..1840 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:02:17 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
Six4-RA 1..1840 1..1840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:20:15 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
Six4-RA 10..1849 1..1840 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:47:37 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
Six4-RA 1..1840 1..1840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:06:43 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
Six4-RA 10..1849 1..1840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:15 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20788886..20789171 1555..1840 99 <- Minus
3L 20790136..20790653 1037..1554 99 <- Minus
3L 20790720..20791114 642..1036 99 <- Minus
3L 20792128..20792768 1..641 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:15 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20788886..20789171 1555..1840 99 <- Minus
3L 20790136..20790653 1037..1554 99 <- Minus
3L 20790720..20791114 642..1036 99 <- Minus
3L 20792128..20792768 1..641 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:15 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20788886..20789171 1555..1840 99 <- Minus
3L 20790136..20790653 1037..1554 99 <- Minus
3L 20790720..20791114 642..1036 99 <- Minus
3L 20792128..20792768 1..641 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:20:15 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20781986..20782271 1555..1840 99 <- Minus
arm_3L 20783236..20783753 1037..1554 99 <- Minus
arm_3L 20783820..20784214 642..1036 99 <- Minus
arm_3L 20785228..20785868 1..641 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:54:14 Download gff for GM13131.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20781986..20782271 1555..1840 99 <- Minus
3L 20783236..20783753 1037..1554 99 <- Minus
3L 20783820..20784214 642..1036 99 <- Minus
3L 20785228..20785868 1..641 99   Minus

GM13131.pep Sequence

Translation from 481 to 1659

> GM13131.pep
MFDKNLDGNNLSVSIGGDLDSTSSGGTSSDHSAVHQDNLSSPMAYGSLFL
PNAGYRGNLSCKTVLQLDKFAPYEGVEKDHLLERRFQDITNDYDKSPPPT
ASTTPTHYPSLNSIIFENGSSGNLGDLNGNTKTDLCAGLQRSGGGLGGNA
GSGGHLISNLTAAHNMSAVSSFPIDAKMLQFSTDQIQCMCEALQQKGDIE
KLTTFLCSLPPSEFFKTNESVLRARAMVAYNLGQFHELYNLLETHCFSIK
YHVDLQNLWFKAHYKEAEKVRGRPLGAVDKYRLRKKYPLPKTIWDGEETV
YCFKEKSRNALKDCYLTNRYPTPDEKKTLAKKTGLTLTQVSNWFKNRRQR
DRTPQQRPDIMSVLPVGQLDGNGFPRMFNAPSYYPETIFNGQ*

GM13131.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24111-PA 392 GF24111-PA 1..392 1..392 1832 94.9 Plus
Dana\GF12955-PA 419 GF12955-PA 103..279 181..357 634 63.3 Plus
Dana\GF13656-PA 489 GF13656-PA 17..209 159..347 509 50.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13283-PA 392 GG13283-PA 1..392 1..392 2097 98.7 Plus
Dere\GG23277-PA 422 GG23277-PA 108..284 181..357 633 63.3 Plus
Dere\GG23326-PA 490 GG23326-PA 15..207 159..347 506 50.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14784-PA 390 GH14784-PA 1..390 1..392 1835 90.4 Plus
Dgri\GH21164-PA 466 GH21164-PA 120..296 181..357 635 63.3 Plus
Dgri\GH21899-PA 474 GH21899-PA 21..207 164..347 506 52.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
Six4-PB 392 CG3871-PB 1..392 1..392 2095 100 Plus
Six4-PA 392 CG3871-PA 1..392 1..392 2095 100 Plus
so-PA 416 CG11121-PA 22..279 100..357 647 50.6 Plus
Optix-PA 487 CG18455-PA 15..212 159..352 516 51.5 Plus
Optix-PC 492 CG18455-PC 15..212 159..352 516 51.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11887-PA 400 GI11887-PA 1..400 1..392 1778 88.4 Plus
Dmoj\GI18759-PA 454 GI18759-PA 91..295 136..357 646 55.9 Plus
Dmoj\GI19347-PA 501 GI19347-PA 21..207 164..347 505 52.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12751-PA 392 GL12751-PA 1..392 1..392 1612 82.2 Plus
Dper\GL11165-PA 430 GL11165-PA 112..288 181..357 635 63.3 Plus
Dper\GL11483-PA 493 GL11483-PA 15..207 159..347 507 50.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17741-PA 395 GA17741-PA 1..395 1..392 1769 92.7 Plus
Dpse\GA10770-PA 425 GA10770-PA 110..286 181..357 634 63.3 Plus
Dpse\GA14941-PA 492 GA14941-PA 15..207 159..347 508 50.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22186-PA 383 GM22186-PA 1..383 1..392 2034 97.2 Plus
Dsec\GM20951-PA 414 GM20951-PA 63..275 147..357 644 56.8 Plus
Dsec\GM21001-PA 487 GM21001-PA 15..207 159..347 506 50.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12161-PA 392 GD12161-PA 1..392 1..392 2107 99.5 Plus
Dsim\GD10533-PA 292 GD10533-PA 15..207 159..347 503 50.3 Plus
Dsim\GD10477-PA 129 GD10477-PA 33..128 262..357 382 70.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13766-PA 391 GJ13766-PA 1..391 1..392 1811 89.1 Plus
Dvir\GJ21783-PA 439 GJ21783-PA 115..291 181..357 632 63.3 Plus
Dvir\GJ22125-PA 481 GJ22125-PA 21..207 164..347 507 52.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12359-PA 414 GK12359-PA 1..414 1..392 1670 81.3 Plus
Dwil\GK21318-PA 443 GK21318-PA 124..300 181..357 640 63.3 Plus
Dwil\GK23166-PA 490 GK23166-PA 23..209 164..347 508 52.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22732-PA 392 GE22732-PA 1..392 1..392 2093 98.5 Plus
Dyak\GE22381-PA 392 GE22381-PA 1..392 1..392 2093 98.5 Plus
Dyak\GE19124-PA 417 GE19124-PA 106..282 181..357 636 63.3 Plus
Dyak\GE19170-PA 492 GE19170-PA 15..207 159..347 506 50.3 Plus

GM13131.hyp Sequence

Translation from 481 to 1659

> GM13131.hyp
MFDKNLDGNNLSVSIGGDLDSTSSGGTSSDHSAVHQDNLSSPMAYGSLFL
PNAGYRGNLSCKTVLQLDKFAPYEGVEKDHLLERRFQDITNDYDKSPPPT
ASTTPTHYPSLNSIIFENGSSGNLGDLNGNTKTDLCAGLQRSGGGLGGNA
GSGGHLISNLTAAHNMSAVSSFPIDAKMLQFSTDQIQCMCEALQQKGDIE
KLTTFLCSLPPSEFFKTNESVLRARAMVAYNLGQFHELYNLLETHCFSIK
YHVDLQNLWFKAHYKEAEKVRGRPLGAVDKYRLRKKYPLPKTIWDGEETV
YCFKEKSRNALKDCYLTNRYPTPDEKKTLAKKTGLTLTQVSNWFKNRRQR
DRTPQQRPDIMSVLPVGQLDGNGFPRMFNAPSYYPETIFNGQ*

GM13131.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
Six4-PB 392 CG3871-PB 1..392 1..392 2095 100 Plus
Six4-PA 392 CG3871-PA 1..392 1..392 2095 100 Plus
so-PA 416 CG11121-PA 22..279 100..357 647 50.6 Plus
Optix-PA 487 CG18455-PA 15..212 159..352 516 51.5 Plus
Optix-PC 492 CG18455-PC 15..212 159..352 516 51.5 Plus