Clone GM13341 Report

Search the DGRC for GM13341

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:133
Well:41
Vector:pOT2
Associated Gene/TranscriptCG2100-RA
Protein status:GM13341.pep: gold
Preliminary Size:1560
Sequenced Size:1573

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2100 2001-01-01 Release 2 assignment
CG2100 2001-09-19 Blastp of sequenced clone
CG2100 2003-01-01 Sim4 clustering to Release 3
CG2100 2008-04-29 Release 5.5 accounting
CG2100 2008-08-15 Release 5.9 accounting
CG2100 2008-12-18 5.12 accounting

Clone Sequence Records

GM13341.complete Sequence

1573 bp (1573 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058485

> GM13341.complete
TAAACATTAGATCTTAAATTTTTCGACATTGCTTAGAAGTTTTGCCGGGC
GGGCTCGAATATCTTACATGAATGGACCAAGCCTCCTCGTAAAGTTGACC
ACACGTGCCTTCCTGTTATTCAACGGTCGCCCCCAGAATCGCTGGCTAAA
GTCGATGGCCAATAGTATGGTTTGCTCGCGAGGCGTCTCTCCAGAATTGA
TTGCCCAGCTGGGAAAACCACCTAGGATGCGCACAAACCCGGCATTCCGG
AAGGTGGCAACTCCTGAGTTCAAAAGCATATTTACCCCCGAGCTGAATGA
CCTTGTGGCGCTCTTTAAGAAGTACGACTACGAGCTGCGGATCGCCGGCG
GAGCTGTGCGCGACATTCTGATGGGCATTCCACCGAAGGACATCGACTTG
GCCACCACCGCCACTCCGGATCAGATGAAGCAGATGTTTGAGAAGGAGGA
GGTGCGAATGATAAACGCAAACGGCGAAAAGCACGGCACCATCACTCCTA
GAATCAATGACAAGGAGAACTTCGAGGTGACCACATTACGCATCGACATC
CGCACCGATGGACGCCATGCGGAGGTGATGTACACGACTGACTGGCAACT
GGATGCGAACCGCCGCGATTTGACAATCAACTCTATGTTCTTAGGCTTTG
ATGGCACCGTGTACGATTACTTCTATGGCTACGATGATCTCCAGGAGCGT
CGCGTGGTCTTCGTGGGCGAAGCAGATATTCGCATTAAGGAGGATTTTCT
GCGCATCCTGCGCTATTTCCGATTCTACGGACGCATCGCAAGTGAGGAAA
ACAACCACGATAAGGCCACCCTGGCAGCCATAAAGGAAAACGCGAAAGGT
CTTGCGAGAATAAGTGGCGAGCGGATCTGGTCTGAGCTCCAAAAGATAGT
GCCGGGAAATTTCGGAGCCGCATTGTTTCTGGAGATGCACCGTTGTAACC
TATTCGAGTACATTGGGCTGCCTAAAGAGCCATATCTGGATGAGTTCGAC
CGGCTTTGCAAAGCGCTAGATCAATTTGAAAAGCCACATCAGCCGATTTT
GTACTTGGCAGGGATGCTGCACTCCGTGGAAGACGCCATGGAAATGCACA
AACGCCTGAAGCTATCCGCCTACGAACGAGACCTGGCTAGGTTCATTACC
CAGGAGCGGGAGAAGGTTGGCTCACAGTACACGACCCTGCGTGACTATCA
GAAGTTGTGCTTACAAAAGTACATTCAAAGGGATTTCGTAGAACAGTTGC
TGAAATACTCTGGCAAACTGGAACTTTACAACCAGCTCAAGTCGTGGGTC
AAGCCGGACTTCCCGATCAGGGGAAATGCTTTGGCTCAGCGTGGTCTGAA
CGGAATGAGGCTTGGTTTGGTGATGGATGAACTGAAACTTTTGTGGGCAG
ACAGTGATTTTCAGCTAACACACGACGATTTACTGAAATGGATTCCCAAC
GTACTGAAAAAGATACCAAGCGCTCCTGGTAAAGTGAAGCGAATGAAGTA
GTATTGATTACATTTAGATGTAATCGATGTAAATAAATATATGGGTTTCC
CTTGAAAAAAAAAAAAAAAAAAA

GM13341.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG2100-RB 1676 CG2100-RB 112..1667 1..1556 7780 100 Plus
CG2100-RA 1665 CG2100-RA 112..1665 1..1554 7770 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1560804..1561970 1167..1 5835 100 Minus
chr3R 27901430 chr3R 1560356..1560746 1554..1164 1955 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:22:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5735157..5736323 1167..1 5835 100 Minus
3R 32079331 3R 5734707..5735099 1556..1164 1965 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5475988..5477154 1167..1 5835 100 Minus
3R 31820162 3R 5475538..5475930 1556..1164 1965 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:35:54 has no hits.

GM13341.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:36:54 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1560356..1560744 1166..1554 100 <- Minus
chr3R 1560806..1561970 1..1165 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:07:41 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG2100-RA 1..1434 68..1501 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:30 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG2100-RB 1..1434 68..1501 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:46:41 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG2100-RA 1..1434 68..1501 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:09 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG2100-RA 1..1434 68..1501 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:05:15 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG2100-RA 1..1434 68..1501 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:53:34 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG2100-RA 74..1627 1..1554 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:30 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG2100-RB 74..1627 1..1554 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:46:41 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG2100-RA 33..1586 1..1554 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:09 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG2100-RA 74..1627 1..1554 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:05:15 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG2100-RA 33..1586 1..1554 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:54 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5734709..5735097 1166..1554 100 <- Minus
3R 5735159..5736323 1..1165 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:54 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5734709..5735097 1166..1554 100 <- Minus
3R 5735159..5736323 1..1165 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:54 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5734709..5735097 1166..1554 100 <- Minus
3R 5735159..5736323 1..1165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:46:41 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1560431..1560819 1166..1554 100 <- Minus
arm_3R 1560881..1562045 1..1165 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:12:06 Download gff for GM13341.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5475540..5475928 1166..1554 100 <- Minus
3R 5475990..5477154 1..1165 100   Minus

GM13341.pep Sequence

Translation from 67 to 1500

> GM13341.pep
MNGPSLLVKLTTRAFLLFNGRPQNRWLKSMANSMVCSRGVSPELIAQLGK
PPRMRTNPAFRKVATPEFKSIFTPELNDLVALFKKYDYELRIAGGAVRDI
LMGIPPKDIDLATTATPDQMKQMFEKEEVRMINANGEKHGTITPRINDKE
NFEVTTLRIDIRTDGRHAEVMYTTDWQLDANRRDLTINSMFLGFDGTVYD
YFYGYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRIASEENNHDKA
TLAAIKENAKGLARISGERIWSELQKIVPGNFGAALFLEMHRCNLFEYIG
LPKEPYLDEFDRLCKALDQFEKPHQPILYLAGMLHSVEDAMEMHKRLKLS
AYERDLARFITQEREKVGSQYTTLRDYQKLCLQKYIQRDFVEQLLKYSGK
LELYNQLKSWVKPDFPIRGNALAQRGLNGMRLGLVMDELKLLWADSDFQL
THDDLLKWIPNVLKKIPSAPGKVKRMK*

GM13341.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18651-PA 487 GF18651-PA 1..485 1..477 1907 73.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10877-PA 477 GG10877-PA 1..477 1..477 2356 91.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15807-PA 457 GH15807-PA 13..455 40..477 1668 67.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2100-PB 477 CG2100-PB 1..477 1..477 2494 100 Plus
CG2100-PA 477 CG2100-PA 1..477 1..477 2494 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23728-PA 450 GI23728-PA 14..448 40..475 1695 71.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23016-PA 351 GL23016-PA 10..241 40..273 952 75.6 Plus
Dper\GL23016-PA 351 GL23016-PA 238..351 367..477 338 57 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15240-PA 450 GA15240-PA 10..450 40..477 1742 72.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10595-PA 254 GM10595-PA 1..245 1..245 1260 95.9 Plus
Dsec\GM10596-PA 188 GM10596-PA 1..188 290..477 929 92.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19587-PA 476 GD19587-PA 1..476 1..477 2414 95 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23286-PA 454 GJ23286-PA 14..445 40..471 1752 73.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14077-PA 477 GK14077-PA 44..473 43..472 1729 71.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24143-PA 477 GE24143-PA 1..477 1..477 2369 92 Plus

GM13341.hyp Sequence

Translation from 67 to 1500

> GM13341.hyp
MNGPSLLVKLTTRAFLLFNGRPQNRWLKSMANSMVCSRGVSPELIAQLGK
PPRMRTNPAFRKVATPEFKSIFTPELNDLVALFKKYDYELRIAGGAVRDI
LMGIPPKDIDLATTATPDQMKQMFEKEEVRMINANGEKHGTITPRINDKE
NFEVTTLRIDIRTDGRHAEVMYTTDWQLDANRRDLTINSMFLGFDGTVYD
YFYGYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRIASEENNHDKA
TLAAIKENAKGLARISGERIWSELQKIVPGNFGAALFLEMHRCNLFEYIG
LPKEPYLDEFDRLCKALDQFEKPHQPILYLAGMLHSVEDAMEMHKRLKLS
AYERDLARFITQEREKVGSQYTTLRDYQKLCLQKYIQRDFVEQLLKYSGK
LELYNQLKSWVKPDFPIRGNALAQRGLNGMRLGLVMDELKLLWADSDFQL
THDDLLKWIPNVLKKIPSAPGKVKRMK*

GM13341.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2100-PB 477 CG2100-PB 1..477 1..477 2494 100 Plus
CG2100-PA 477 CG2100-PA 1..477 1..477 2494 100 Plus