Clone GM13370 Report

Search the DGRC for GM13370

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:133
Well:70
Vector:pOT2
Associated Gene/TranscriptCG9772-RC
Protein status:GM13370.pep: wuzgold
Preliminary Size:1965
Sequenced Size:1975

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9772 2001-01-01 Release 2 assignment
CG9772 2001-10-10 Blastp of sequenced clone
CG9772 2003-01-01 Sim4 clustering to Release 3
CG9772 2008-04-29 Release 5.5 accounting
CG9772 2008-08-15 Release 5.9 accounting
CG9772 2008-12-18 5.12 accounting

Clone Sequence Records

GM13370.complete Sequence

1975 bp (1975 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060981

> GM13370.complete
AGTTTTTGTGTTTACGGCGGTGAAAAAATAGATTTCGTGTAAATATGAGC
AGTCGCAAGCACAGAGGCTCCGAAAACATGGAAAATTTGTGCCCGGTGAC
CAGAAAGCGCTCGACTAATAAGAACCACGTCTCTGTTGTGGGCGCTCTAG
TTTCCACTACGAAGTCATCGCACTACGAGCACCCTTCCTCGCCCTCGGCA
CTAACTTTTGAGGCCCTAGAAGAGATGGGAATCGGAATGCTTGATTCCGA
AGAAAGCAGCTCCTCAGCCCTCTCGGCCATCGCTTTGGCGGTTAGCGCCA
CCAGCGACGACAACTCAAATGAGACGACCCCGTGCGCCAGTGTGTCGCGC
ATGGCGCACCAGCTACAGCACACGCAACGGCTAAGTCTGGGCTCTACGGG
GGACATCACACTGGATAGCCCAGCTGTGGAGGATTCACTGTCGATGTCCC
GTCAATCGGCCGAGAAGCTGCAGATTCTGGCGCAGGCTAAGCGCTCGTCG
TTGGGTTCTGAAGGTAGCGGCAATTCAAACTCGCCCAGCAAACGTTTGCG
CAACCCCCTGGCTGCAGTCACCTGTAACAACCAGATTGATGGGACTGCTT
CGCTCAATTTTCAGCCATCAACCAGCAGGTTGGCGCAAGTTCGCCAGGCA
AAAAAGCCCTCGACAACAAATATTACAACCCGAATAGTGGCAGCGGACAG
TTTCTTTGTGTTTCGCACCCCGGCCATGAGTGCCCACATCAACAGCGGCA
TAAACTACTTTGAAAGACTTTCAGACGAAATACTACTTGACATCTTTAAG
TGGCTCCCGAAGAAGACGCTGCTGCGCATGGCTACCGTTTGTCGACGCTT
TAACCGCTGCTCTCGCGATGAGACTTTGTGGACAAGGCTAGATTTGGGTT
TGCGGACAATTAGACCAGGTGCCCTCGAGCAAATTGTACGGCGGGGAGTC
CTTGTAATACGTCTGGCCCAGACTAGTGTAAGTTACATCTAACATTATGT
TTTCGGGAAACAAGAGCATCTAATCTTTGAACTGTAGATCCAGGAGCCCG
CATTTGCACCATATACAGAAGTGTTTAGGACCCGATTACAATATCTTGAC
CTGAGTATGGCTTCCATCACCCGAAGCTCACTGCTGACACTATTGTCCCA
CTGCCGCCAGCTAAAGAAAATAAGCTTAGAGAATATTGAGCTCGATGATG
ACATCTGTGCAGAGATCGCAAAGAATGAAGCTTTGGAGGCGGTCAATCTG
ACTATGGCTAGTGGCCTGACGTCCAACAGTGTTCGCCTGATGATGGAGTC
ACTTACCAGCCTAAGCAGCTTAAACATATCGTGGACTGACCTAAGTGCGG
ATGCTGTTACGGCGTTGGTTACCCACATTTCCCCCAACTTAATTCGGCTC
AATATCGCTGGCTGCCGCCGCGTTTTGTTTGACTCGCATGTTGCAACCCT
GCAAAAACGGTGTCCTCAGTTGTTGGAGCTTGATCTATCTGATTGCAATA
TTCTAACACCAACAGTCATTACTGCAATTATGAAGTTCAAGATGCTGGAA
TATTTGTCCGTCTCCCGATGCTATCTTATTCCAGCAACCAAATTTATGTA
AGATTTTTCCAGCAAGCGTCTGATTAATCCCTACCCAGTCATTTTCCTTG
CAGTGAACTTAAGAGTATGCCCTCGCTAACCTATTTAGACATATTTGGGA
TGCTGTCGGACACTGCAATGGAAGTCCTTGAGAAACAACTGCCAAAAATG
GGTATAAACAAATTCATTCACAGTTCGGTATCCCGCCCGACTGTTGGCAC
GCGACGCACCTCCATTTGGGGTCTGCGCACGCGCGACTAAGTCTCGACTC
TGCTGCTTCCGTTACCATTTGAATTTGTTTTGCTGCGTAAGCCACCCGTA
ACGCAGTTATTTTATTCTCAATTCAACAACATAAATAATCACATTTAGCT
GTTCTTAAAAAAAAAAAAAAAAAAA

GM13370.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9772-RC 2136 CG9772-RC 37..1993 1..1957 9770 99.9 Plus
CG9772.c 1932 CG9772.c 37..1014 1..978 4890 100 Plus
CG9772.b 1897 CG9772.b 37..1013 1..977 4885 100 Plus
CG9772.c 1932 CG9772.c 1014..1927 1044..1957 4555 99.8 Plus
CG9772.b 1897 CG9772.b 1014..1573 1038..1597 2785 99.8 Plus
CG9772.b 1897 CG9772.b 1574..1892 1639..1957 1595 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 161729..163065 1437..101 6685 100 Minus
chr3R 27901430 chr3R 161147..161665 1956..1438 2580 99.8 Minus
chr3R 27901430 chr3R 163268..163370 103..1 515 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:22:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4336009..4337345 1437..101 6685 100 Minus
3R 32079331 3R 4335426..4335945 1957..1438 2585 99.8 Minus
3R 32079331 3R 4337548..4337650 103..1 515 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4076840..4078176 1437..101 6685 100 Minus
3R 31820162 3R 4076257..4076776 1957..1438 2585 99.8 Minus
3R 31820162 3R 4078379..4078481 103..1 515 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:57:03 has no hits.

GM13370.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:57:40 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 161147..161665 1438..1956 99 <- Minus
chr3R 161729..163062 104..1437 100 <- Minus
chr3R 163268..163370 1..103 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:07:42 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RA 1..933 45..977 100 == Plus
CG9772-RA 934..1500 1038..1606 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:17 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RA 1..933 45..977 100 == Plus
CG9772-RA 934..1500 1038..1606 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:54:30 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
Skp2-RA 1..933 45..977 100 == Plus
Skp2-RA 934..1500 1038..1606 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:40:12 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RA 1..933 45..977 100 == Plus
CG9772-RA 934..1500 1038..1606 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:16 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
Skp2-RA 1..933 45..977 100 == Plus
Skp2-RA 934..1500 1038..1606 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:11:21 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RC 37..1992 1..1956 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:17 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RC 37..1992 1..1956 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:54:30 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
Skp2-RA 37..1013 1..977 100 == Plus
Skp2-RA 1014..1580 1038..1606 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:40:12 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RC 37..1992 1..1956 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:16 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
Skp2-RA 25..1001 1..977 100 == Plus
Skp2-RA 1002..1568 1038..1606 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:57:40 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4335427..4335945 1438..1956 99 <- Minus
3R 4336009..4337342 104..1437 100 <- Minus
3R 4337548..4337650 1..103 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:57:40 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4335427..4335945 1438..1956 99 <- Minus
3R 4336009..4337342 104..1437 100 <- Minus
3R 4337548..4337650 1..103 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:57:40 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4335427..4335945 1438..1956 99 <- Minus
3R 4336009..4337342 104..1437 100 <- Minus
3R 4337548..4337650 1..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:54:30 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 161149..161667 1438..1956 99 <- Minus
arm_3R 161731..163064 104..1437 100 <- Minus
arm_3R 163270..163372 1..103 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:23:17 Download gff for GM13370.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4076258..4076776 1438..1956 99 <- Minus
3R 4076840..4078173 104..1437 100 <- Minus
3R 4078379..4078481 1..103 100   Minus

GM13370.hyp Sequence

Translation from 44 to 991

> GM13370.hyp
MSSRKHRGSENMENLCPVTRKRSTNKNHVSVVGALVSTTKSSHYEHPSSP
SALTFEALEEMGIGMLDSEESSSSALSAIALAVSATSDDNSNETTPCASV
SRMAHQLQHTQRLSLGSTGDITLDSPAVEDSLSMSRQSAEKLQILAQAKR
SSLGSEGSGNSNSPSKRLRNPLAAVTCNNQIDGTASLNFQPSTSRLAQVR
QAKKPSTTNITTRIVAADSFFVFRTPAMSAHINSGINYFERLSDEILLDI
FKWLPKKTLLRMATVCRRFNRCSRDETLWTRLDLGLRTIRPGALEQIVRR
GVLVIRLAQTSVSYI*

GM13370.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
Skp2-PE 559 CG9772-PE 1..312 1..312 1555 99.7 Plus
Skp2-PA 559 CG9772-PA 1..312 1..312 1555 99.7 Plus

GM13370.pep Sequence

Translation from 44 to 991

> GM13370.pep
MSSRKHRGSENMENLCPVTRKRSTNKNHVSVVGALVSTTKSSHYEHPSSP
SALTFEALEEMGIGMLDSEESSSSALSAIALAVSATSDDNSNETTPCASV
SRMAHQLQHTQRLSLGSTGDITLDSPAVEDSLSMSRQSAEKLQILAQAKR
SSLGSEGSGNSNSPSKRLRNPLAAVTCNNQIDGTASLNFQPSTSRLAQVR
QAKKPSTTNITTRIVAADSFFVFRTPAMSAHINSGINYFERLSDEILLDI
FKWLPKKTLLRMATVCRRFNRCSRDETLWTRLDLGLRTIRPGALEQIVRR
GVLVIRLAQTSVSYI*

GM13370.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16815-PA 561 GF16815-PA 1..315 1..312 1119 74.7 Plus
Dana\GF15907-PA 383 GF15907-PA 35..301 56..312 819 63.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11654-PA 561 GG11654-PA 1..314 1..312 1347 91.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18735-PA 579 GH18735-PA 1..330 1..312 899 62.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Skp2-PE 559 CG9772-PE 1..312 1..312 1555 99.7 Plus
Skp2-PA 559 CG9772-PA 1..312 1..312 1555 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22887-PA 589 GI22887-PA 1..340 1..312 889 58.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12326-PA 533 GL12326-PA 1..308 1..312 1057 72.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22024-PC 341 GA22024-PC 1..309 1..313 1066 73.2 Plus
Dpse\GA22024-PA 555 GA22024-PA 1..308 1..312 1064 72.8 Plus
Dpse\GA22024-PB 548 GA22024-PB 12..301 19..312 964 71.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10708-PA 557 GM10708-PA 1..310 1..312 1380 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19685-PA 557 GD19685-PA 1..310 1..312 1393 93.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14183-PA 584 GJ14183-PA 1..336 1..312 962 64.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11443-PA 590 GK11443-PA 1..342 1..312 888 58.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25359-PA 561 GE25359-PA 1..314 1..312 1331 86 Plus