Clone GM13388 Report

Search the DGRC for GM13388

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:133
Well:88
Vector:pOT2
Associated Gene/Transcriptspict-RA
Protein status:GM13388.pep: gold
Preliminary Size:2200
Sequenced Size:1461

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12292 2001-01-01 Release 2 assignment
CG12292 2002-02-26 Blastp of sequenced clone
CG12292 2003-01-01 Sim4 clustering to Release 3
spict 2008-04-29 Release 5.5 accounting
spict 2008-08-15 Release 5.9 accounting
spict 2008-12-18 5.12 accounting

Clone Sequence Records

GM13388.complete Sequence

1461 bp (1461 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089521

> GM13388.complete
GACTTTCTGGTGCGAAAAGCAGGAGCGGATCACACAGCGGATTAGCGATG
AACAGCGACGGCGAAGCCTCATCACTGCAGATGCCCCAGGTGACGGTGGG
TGGCATGCTGCCGGTAGAAGCCAACCAATCGCCTGAAACCGCTCCGCTTT
CGATGGCGGAGACGGTGTCCAACACGGACTTCTACATCGGCGTTGGCCTG
GCTATCTCCTCCTGCTTCTTCATCGGTTCCAGCTTCATCATCAAAAAGAA
GGCACTCATTCGGCTGAGCAGGTACGGCGAGGTGCGGGCGTCAGCTGGAG
GATTTGGATATCTGAGGGAGTGGATCTGGTGGGCGGGCCTTCTGACAATG
GGTGTGGGAGAAGCGGCCAACTTTGCGGCCTACGCCTTTGCCCCCGCTTC
ATTGGTCACTCCGTTAGGCGCGCTGAGTGTTATCATCTCAGCCGTGATGG
CCTCCAGATTCCTCAACGAGAAGCTAAACTTGCTGGGGAAGATCGGCTGC
TTTCTGTGCATACTGGGATCCACCATCATTGTGATTCACTCGCCCAAAGA
GAAGGAGATCGAGGATTTGCAGCTGCTATTCGATATGCTTTTGGATCCGG
TTTTCATTCTATACGTGATCTGCATCGTCGGTTCCACGGTGTTTGTGGCC
TGCTTCATTGCACCACGGCATGGGCACACCAATGTGGTAGTTTATATCTT
CTTGTGCTCCGGCATCGGATCTCTGACTGTGATGTCCTGCAAGGCATTGG
GCCTAGCCATACGGCAGACGCTGAATAACGGAGGCAACGTCTTCCTCACA
TGGATGCCATGGTTCCTGATCCTGGTCACCGTCACTTTCATAGCCATCCA
GATGAACTATCTGAACAAGGCGCTGGATATATTCAATACTAGTATAGTTA
CTCCAGTGTACTATGTAATGTTCACCACCCTGGTGATAGCTGCGTCTGCC
ATCCTCTTCAAGGAGTTCACCCACATGCGGTTCGATGATATTCTCGGCGA
TGTGTGCGGCTTCCTGATCGTTATCACAGCTGTGTTCCTGCTCAACGCGT
TCAGAGATATTGATATATCGCTGAACGATGTACGTGGACTGATGCGACCG
AAAATGCAGCGGGTGTCGCAGTTCGACGAGGAGGTGCTGGTCACCAGCAA
TACCAAGGAACGTCGCCTGTCCTACGGATCCAGCGACATCTTCCGGAAGG
CCTGACACAAGCAGCGCTACCAGGTCTAGTTACATCCCTTGCAGCGGCTG
ACCTGAAGACAAGGTTGCTTTACTCCGTAAACGAGGCATTGGTCCAAATA
TCTGTGCATATCACCTGCAATCACTTTCATCTCATCATTTCCATTTATTG
TTCCTTCACTCTTGTTATTCATACATTCGCTAGCATAAGCACATAGGTTT
AGGTTACACTTACATATATTAAACACGACTTAATGAAAACGAAAAAAAAA
AAAAAAAAAAA

GM13388.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
spict-RA 1561 spict-RA 104..1545 1..1442 7105 99.5 Plus
spict.a 1162 spict.a 70..1162 349..1441 5405 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12704283..12705384 340..1441 5420 99.5 Plus
chr2L 23010047 chr2L 12703446..12703793 1..348 1695 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:22:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12705582..12706684 340..1442 5425 99.5 Plus
2L 23513712 2L 12704745..12705092 1..348 1695 99.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12705582..12706684 340..1442 5425 99.4 Plus
2L 23513712 2L 12704745..12705092 1..348 1695 99.1 Plus
Blast to na_te.dros performed on 2019-03-15 15:44:09 has no hits.

GM13388.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:45:04 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12703446..12703793 1..348 99 -> Plus
chr2L 12704292..12705384 349..1441 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:07:44 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
spict-RA 1..1158 48..1205 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:36:03 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
spict-RA 1..1158 48..1205 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:38:00 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
spict-RB 1..1182 48..1229 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:07:30 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
spict-RA 1..1158 48..1205 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:14:02 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
spict-RB 1..1182 48..1229 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:01:33 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
spict-RA 23..1463 1..1441 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:36:03 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
spict-RA 22..1462 1..1441 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:38:00 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
spict-RA 21..1461 1..1441 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:07:30 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
spict-RA 23..1463 1..1441 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:14:02 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
spict-RA 21..1461 1..1441 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:45:04 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12704745..12705092 1..348 99 -> Plus
2L 12705591..12706683 349..1441 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:45:04 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12704745..12705092 1..348 99 -> Plus
2L 12705591..12706683 349..1441 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:45:04 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12704745..12705092 1..348 99 -> Plus
2L 12705591..12706683 349..1441 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:38:00 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12704745..12705092 1..348 99 -> Plus
arm_2L 12705591..12706683 349..1441 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:41:28 Download gff for GM13388.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12704745..12705092 1..348 99 -> Plus
2L 12705591..12706683 349..1441 99   Plus

GM13388.hyp Sequence

Translation from 2 to 1204

> GM13388.hyp
LSGAKSRSGSHSGLAMNSDGEASSLQMPQVTVGGMLPVEANQSPETAPLS
MAETVSNTDFYIGVGLAISSCFFIGSSFIIKKKALIRLSRYGEVRASAGG
FGYLREWIWWAGLLTMGVGEAANFAAYAFAPASLVTPLGALSVIISAVMA
SRFLNEKLNLLGKIGCFLCILGSTIIVIHSPKEKEIEDLQLLFDMLLDPV
FILYVICIVGSTVFVACFIAPRHGHTNVVVYIFLCSGIGSLTVMSCKALG
LAIRQTLNNGGNVFLTWMPWFLILVTVTFIAIQMNYLNKALDIFNTSIVT
PVYYVMFTTLVIAASAILFKEFTHMRFDDILGDVCGFLIVITAVFLLNAF
RDIDISLNDVRGLMRPKMQRVSQFDEEVLVTSNTKERRLSYGSSDIFRKA
*

GM13388.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
spict-PA 385 CG12292-PA 1..385 16..400 1954 100 Plus
spict-PB 393 CG12292-PB 1..385 16..400 1954 100 Plus

GM13388.pep Sequence

Translation from 47 to 1204

> GM13388.pep
MNSDGEASSLQMPQVTVGGMLPVEANQSPETAPLSMAETVSNTDFYIGVG
LAISSCFFIGSSFIIKKKALIRLSRYGEVRASAGGFGYLREWIWWAGLLT
MGVGEAANFAAYAFAPASLVTPLGALSVIISAVMASRFLNEKLNLLGKIG
CFLCILGSTIIVIHSPKEKEIEDLQLLFDMLLDPVFILYVICIVGSTVFV
ACFIAPRHGHTNVVVYIFLCSGIGSLTVMSCKALGLAIRQTLNNGGNVFL
TWMPWFLILVTVTFIAIQMNYLNKALDIFNTSIVTPVYYVMFTTLVIAAS
AILFKEFTHMRFDDILGDVCGFLIVITAVFLLNAFRDIDISLNDVRGLMR
PKMQRVSQFDEEVLVTSNTKERRLSYGSSDIFRKA*

GM13388.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14206-PA 382 GF14206-PA 1..382 1..385 1707 90.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23795-PA 385 GG23795-PA 1..385 1..385 1977 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13211-PA 383 GH13211-PA 2..383 4..385 1636 81.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
spict-PB 393 CG12292-PB 1..385 1..385 1954 100 Plus
spict-PA 385 CG12292-PA 1..385 1..385 1954 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14501-PA 375 GI14501-PA 5..375 18..385 1566 81.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19725-PA 380 GL19725-PA 4..380 6..385 1719 88.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11537-PA 380 GA11537-PA 4..380 6..385 1719 88.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10042-PA 385 GM10042-PA 1..385 1..385 2002 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23850-PA 385 GD23850-PA 1..385 1..385 1985 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16278-PA 375 GJ16278-PA 22..375 30..385 1590 87.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14661-PA 385 GK14661-PA 1..385 1..385 1628 84.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18599-PA 384 GE18599-PA 2..384 3..385 1975 97.4 Plus