Clone GM13868 Report

Search the DGRC for GM13868

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:138
Well:68
Vector:pOT2
Associated Gene/TranscriptCG3831-RA
Protein status:GM13868.pep: gold
Preliminary Size:1687
Sequenced Size:1570

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3831 2001-01-01 Release 2 assignment
CG3831 2001-11-09 Blastp of sequenced clone
CG3831 2003-01-01 Sim4 clustering to Release 3
CG3831 2008-04-29 Release 5.5 accounting
CG3831 2008-08-15 Release 5.9 accounting
CG3831 2008-12-18 5.12 accounting

Clone Sequence Records

GM13868.complete Sequence

1570 bp (1570 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069282

> GM13868.complete
CTGGACCGCCGGTCGCGATCGATCACTCTCCCGCTCCCGTTAGTCGTGCT
TTCTCTCGCTGCTTCGATCAGCGGGAACTCTCCCCACCCACGCCATGTGT
TTTTGTTGTGAATGAAATCCCCCGTTCACTGTTGTTATAACTGTTACTTT
CCACCCTCTATCACCCACTAACGCCCATCGTTCTTTGTCTGTCATGCATC
GACATAATGCGGAGAGTTCTTTTTGTTTCATCAATCGCATCAACGGGAAT
ACCAATGATGAACTGCAGCAGCCGGGAGAACATGAGCCCACTTCCGCTCT
GCTGGACTACTGTAAACGGAAGTTCCTCCGTCCATATGTGGCCATCCTGA
CCCTGGTGGGCCTCAATCCCATCTCCACGGACATGACCAGCATCCGTGCC
TGCTGCAGCTACGTCCAGGCGCTGATGGTGCTCTTCGTCCTGCTTGTAGG
ATACCTCTTGCGGTATATTTGCGGATACAGGGGCGATCGCGGCTTCACCA
GCTATCGGGATATTAGACCCATAACCAATGGTACAGATGGCGGAGCTACG
ACCCCGAACACCATAGGAGAACTTCTGTTTGGGTTCATAGTGCCCAGTGG
CTTTAACCTCTTGGCCTTCGTGTCGGCAGTGTTGGTATGCAAGGTGATCG
ACCACGAGCAGCTGCAAAACCTCATCGAGAGGGTTTTCCTGATGTCCGCC
AAGCCGAAGAGGCTCTGCCGAATGCTGTGGCTTTTTCTGGCCATTGCACT
GGCCCTGCTGATTTTGCTATTCGGCTACGCCTGTTGTGTGGTGATGATGC
AGCCCAGCCAGATCGTCAAGGTGTCCTGGCTAGCGGAAATCCTAAGCGAC
TGGGAGATGTGGCTGCGAGTGGGTCTCTTGTTCACCATACTGCTGCAGGA
TCTGGTGGAGATTATCATACTGAGCAACTACTACATCGAGTGTTATTTGC
TAAGGATGCATCTGGAAACGCTGTCGCACAAGCTGCTTATGCACTCCATC
GACTCGCTCGATTGGATGAGGGAAGTCCTCGAATTCCGCAAGCTGCTGGA
GCGCTTGAATCAGCACGTGTCTATTCCAGTGTGCTTCCTGATTGTAATGA
ATCTGGCGTACGCCTTCGCGGGATTGGTGTACCTATTTAAGGACTTTGAT
TTCCACTACTGCGCCCTGAAGCTCGTCCTGCTAAATATTGCGAACGTGAT
GCTGTGGCTATTTTTGGGATTGCTGCCCTTTTTCGTGGCATCATCGGTGA
CTCGAGTGTGCCAGAATGCTCAAGCTAATGGACACCAGATACGGGTTCGT
CCATTTGTTTACCACAATACCTCAGCGGAAGATCTCAACTCGACGTTGCT
GTTCGCCGCCTCGCTGGACATGTCCGCCAAACTCTTTCGAATGCCCATCC
AGCCAAACTACTTGTGCTTCGCCATCCTTGTGGTGGTCATTGTGATTCTC
ACGCTGGGCATGTGCCTAAATCTCACAGCACTGGGGAAAATATAATATAA
CTCGTTGTCATTTGTCTATAAAAATTAAGAATTATAGTATTGTCTAGATT
ACAAAAAAAAAAAAAAAAAA

GM13868.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3831-RA 1762 CG3831-RA 209..1762 1..1554 7740 99.8 Plus
CG9849-RA 995 CG9849-RA 946..995 1554..1505 250 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18825497..18826571 1552..478 5345 99.8 Minus
chr2R 21145070 chr2R 18827125..18827446 322..1 1595 99.7 Minus
chr2R 21145070 chr2R 18826877..18827041 485..321 810 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:22:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22938985..22940061 1554..478 5370 99.9 Minus
2R 25286936 2R 22940615..22940936 322..1 1595 99.7 Minus
2R 25286936 2R 22940367..22940531 485..321 810 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22940184..22941260 1554..478 5370 99.9 Minus
2R 25260384 2R 22941814..22942135 322..1 1595 99.6 Minus
2R 25260384 2R 22941566..22941730 485..321 810 99.3 Minus
Blast to na_te.dros performed 2019-03-16 08:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 3125..3281 1162..1008 130 58.8 Minus

GM13868.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:43:51 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18825497..18826568 481..1552 99 <- Minus
chr2R 18826882..18827039 323..480 100 <- Minus
chr2R 18827125..18827446 1..322 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:08:00 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 1..1302 194..1495 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:28:27 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 1..1302 194..1495 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:53:01 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 1..1302 194..1495 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:56:03 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 1..1302 194..1495 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:47:50 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 1..1302 194..1495 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:05:38 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 9..1560 1..1552 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:28:27 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 9..1560 1..1552 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:01 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 11..1562 1..1552 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:56:04 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 9..1560 1..1552 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:47:50 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 11..1562 1..1552 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:51 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22940615..22940936 1..322 99   Minus
2R 22938987..22940058 481..1552 99 <- Minus
2R 22940372..22940529 323..480 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:51 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22940615..22940936 1..322 99   Minus
2R 22938987..22940058 481..1552 99 <- Minus
2R 22940372..22940529 323..480 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:51 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22940615..22940936 1..322 99   Minus
2R 22938987..22940058 481..1552 99 <- Minus
2R 22940372..22940529 323..480 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:01 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18826510..18827581 481..1552 99 <- Minus
arm_2R 18827895..18828052 323..480 100 <- Minus
arm_2R 18828138..18828459 1..322 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:32:11 Download gff for GM13868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22940204..22941275 481..1552 99 <- Minus
2R 22941589..22941746 323..480 100 <- Minus
2R 22941832..22942153 1..322 99   Minus

GM13868.pep Sequence

Translation from 193 to 1494

> GM13868.pep
MHRHNAESSFCFINRINGNTNDELQQPGEHEPTSALLDYCKRKFLRPYVA
ILTLVGLNPISTDMTSIRACCSYVQALMVLFVLLVGYLLRYICGYRGDRG
FTSYRDIRPITNGTDGGATTPNTIGELLFGFIVPSGFNLLAFVSAVLVCK
VIDHEQLQNLIERVFLMSAKPKRLCRMLWLFLAIALALLILLFGYACCVV
MMQPSQIVKVSWLAEILSDWEMWLRVGLLFTILLQDLVEIIILSNYYIEC
YLLRMHLETLSHKLLMHSIDSLDWMREVLEFRKLLERLNQHVSIPVCFLI
VMNLAYAFAGLVYLFKDFDFHYCALKLVLLNIANVMLWLFLGLLPFFVAS
SVTRVCQNAQANGHQIRVRPFVYHNTSAEDLNSTLLFAASLDMSAKLFRM
PIQPNYLCFAILVVVIVILTLGMCLNLTALGKI*

GM13868.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11316-PA 424 GF11316-PA 1..424 1..433 2032 91.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20083-PA 433 GG20083-PA 1..433 1..433 2251 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20917-PA 437 GH20917-PA 1..436 1..432 1878 84.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3831-PA 433 CG3831-PA 1..433 1..433 2244 100 Plus
CG3831-PC 451 CG3831-PC 40..451 21..433 2110 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18356-PA 440 GI18356-PA 1..439 1..432 1907 84.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16240-PA 433 GL16240-PA 1..433 1..433 1990 88.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17717-PA 433 GA17717-PA 1..433 1..433 1986 88.2 Plus
Dpse\GA17717-PB 429 GA17717-PB 40..429 44..433 1768 88.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15598-PA 433 GM15598-PA 1..433 1..433 2265 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25094-PA 531 GD25094-PA 97..531 4..433 1970 91.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20757-PA 440 GJ20757-PA 1..439 1..432 1975 84.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19607-PA 438 GK19607-PA 1..438 1..433 1919 86.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11620-PA 433 GE11620-PA 1..433 1..433 2260 98.4 Plus

GM13868.hyp Sequence

Translation from 193 to 1494

> GM13868.hyp
MHRHNAESSFCFINRINGNTNDELQQPGEHEPTSALLDYCKRKFLRPYVA
ILTLVGLNPISTDMTSIRACCSYVQALMVLFVLLVGYLLRYICGYRGDRG
FTSYRDIRPITNGTDGGATTPNTIGELLFGFIVPSGFNLLAFVSAVLVCK
VIDHEQLQNLIERVFLMSAKPKRLCRMLWLFLAIALALLILLFGYACCVV
MMQPSQIVKVSWLAEILSDWEMWLRVGLLFTILLQDLVEIIILSNYYIEC
YLLRMHLETLSHKLLMHSIDSLDWMREVLEFRKLLERLNQHVSIPVCFLI
VMNLAYAFAGLVYLFKDFDFHYCALKLVLLNIANVMLWLFLGLLPFFVAS
SVTRVCQNAQANGHQIRVRPFVYHNTSAEDLNSTLLFAASLDMSAKLFRM
PIQPNYLCFAILVVVIVILTLGMCLNLTALGKI*

GM13868.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3831-PA 433 CG3831-PA 1..433 1..433 2244 100 Plus
CG3831-PC 451 CG3831-PC 40..451 21..433 2110 99.5 Plus