Clone GM13912 Report

Search the DGRC for GM13912

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:139
Well:12
Vector:pOT2
Associated Gene/TranscriptCG8297-RA
Protein status:GM13912.pep: gold
Preliminary Size:1300
Sequenced Size:1006

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8297 2001-01-01 Release 2 assignment
CG8297 2002-03-19 Blastp of sequenced clone
CG8297 2003-01-01 Sim4 clustering to Release 3
CG8297 2008-04-29 Release 5.5 accounting
CG8297 2008-08-15 Release 5.9 accounting
CG8297 2008-12-18 5.12 accounting

Clone Sequence Records

GM13912.complete Sequence

1006 bp (1006 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094771

> GM13912.complete
TAATGAACCAAAATCTCTTGTTTGTATTTTTGCTCTGCGCCGCGCAGGGC
CAGGCGGAACTCTCCGGATTACTAAGTGCCCTCCAGTATTTCGGGCTCTT
CTCAAATTTGACGGTGTATTCCCTGGGAGTTTCGCGGGGCCAGTGCCATT
ATAGCTTCGAAACCTTGCTGAAGGAGCGACACACATGTGCCCCGGATGAC
GAGCACATCATGCACCTAAACCAGCTGCCTCCGGTTCGAAAGCCACCTAT
TATGATGAAGTGCCTGCAGCGGGATATCGAGAATGAGACAGCATCCGAGC
CGGAACTGCTGATAATGCGCAGTGCCAAGGATATAGTGAATCTGCTTAAG
CCCATGGGCAATGCCACCAAGCGCCACGAGCCGGGCAACTGTGTGCTTGT
CCATTTCTGCACCGCATCCAGCTTGGAGTGCGCTCGTGTGGCTTCGATGG
TCAACGTGCTGCCCCATTACTTTCCCACGCTACCCATCGCCTATGTGGAT
GCCTATGAGTTTGGTCGTTTCAATGCAGAATTCGGCATCGTTTCGCTGCC
CACACTGATGCTATTCCACCAGGGCAGGCCGCTAATCAAATTCGAGCCCG
GGTGGAAGGACACAAAGAGCAGCTTTGCCAGTTTCATAATGAGTCACACC
AATATGAAGACTGTGAATCCGCAGGCCATTGATCCGATCATCCTCACTCG
CGCAGAGATGGAGCCGCTGTCTAATAAACCCATTGTGCAGACGGATTACT
ATTTGGGCCTGGCTTGGGCCTTTATTCTCGTCTGCCTTGCCAACTTCCTG
CGTAAGACGGCGCTCTGGAAGCAGCTGGTAGAGATGGTGCAGCGCATTTG
GCGGGAATCCGAGGAGACGCAAATGGAGATGGTGGACTAGTTAGTTAATA
CGTTTAATTCTCTATAAGTCGCATAAGTAGAACACTGGATTTACTATTAT
AATGTAATTACCATTTAATTAAATTCACGTTAACATTTAAAAAAAAAAAA
AAAAAA

GM13912.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8297-RA 1049 CG8297-RA 62..1049 1..988 4925 99.8 Plus
Mlf-RA 1711 Mlf-RA 1582..1711 989..860 650 100 Minus
Mlf.f 1695 Mlf.f 1585..1695 989..879 555 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11822250..11823207 31..988 4775 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:22:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15934981..15935939 31..989 4780 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15936180..15937138 31..989 4780 99.8 Plus
2R 25260384 2R 15936093..15936122 1..30 150 100 Plus
Blast to na_te.dros performed 2019-03-16 08:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 202..272 746..677 109 63.4 Minus
Tabor 7345 Tabor TABOR 7345bp 7041..7111 746..677 109 63.4 Minus

GM13912.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:49:02 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11822163..11822192 1..30 100 -> Plus
chr2R 11822250..11823207 31..988 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:08:08 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
CG8297-RA 1..888 3..890 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:29:24 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
CG8297-RA 1..888 3..890 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:54:02 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
CG8297-RA 1..888 3..890 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:03:26 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
CG8297-RA 1..888 3..890 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:51:05 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
CG8297-RA 1..888 3..890 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:55:46 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
CG8297-RA 7..994 1..988 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:29:24 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
CG8297-RA 27..1014 1..988 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:02 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
CG8297-RA 70..1057 1..988 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:03:26 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
CG8297-RA 7..994 1..988 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:51:05 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
CG8297-RA 70..1057 1..988 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:49:02 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15934894..15934923 1..30 100 -> Plus
2R 15934981..15935938 31..988 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:49:02 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15934894..15934923 1..30 100 -> Plus
2R 15934981..15935938 31..988 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:49:02 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15934894..15934923 1..30 100 -> Plus
2R 15934981..15935938 31..988 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:02 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11822399..11822428 1..30 100 -> Plus
arm_2R 11822486..11823443 31..988 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:37:00 Download gff for GM13912.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15936180..15937137 31..988 99   Plus
2R 15936093..15936122 1..30 100 -> Plus

GM13912.pep Sequence

Translation from 2 to 889

> GM13912.pep
MNQNLLFVFLLCAAQGQAELSGLLSALQYFGLFSNLTVYSLGVSRGQCHY
SFETLLKERHTCAPDDEHIMHLNQLPPVRKPPIMMKCLQRDIENETASEP
ELLIMRSAKDIVNLLKPMGNATKRHEPGNCVLVHFCTASSLECARVASMV
NVLPHYFPTLPIAYVDAYEFGRFNAEFGIVSLPTLMLFHQGRPLIKFEPG
WKDTKSSFASFIMSHTNMKTVNPQAIDPIILTRAEMEPLSNKPIVQTDYY
LGLAWAFILVCLANFLRKTALWKQLVEMVQRIWRESEETQMEMVD*

GM13912.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11547-PA 299 GF11547-PA 1..299 1..295 1195 73.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20551-PA 298 GG20551-PA 12..298 12..295 1263 79.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22922-PA 260 GH22922-PA 12..260 43..295 808 57.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
bug-PA 295 CG8297-PA 1..295 1..295 1552 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18411-PA 307 GI18411-PA 8..307 4..295 941 63.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16243-PA 301 GL16243-PA 1..301 1..295 1126 69.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20965-PA 301 GA20965-PA 1..301 1..295 1127 69.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21644-PA 295 GM21644-PA 1..295 1..295 1527 95.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11144-PA 295 GD11144-PA 1..295 1..295 1538 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21493-PA 295 GJ21493-PA 7..295 14..295 1002 66.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22210-PA 292 GK22210-PA 2..292 16..295 1070 68.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11737-PA 296 GE11737-PA 1..296 1..295 1324 81.9 Plus

GM13912.hyp Sequence

Translation from 2 to 889

> GM13912.hyp
MNQNLLFVFLLCAAQGQAELSGLLSALQYFGLFSNLTVYSLGVSRGQCHY
SFETLLKERHTCAPDDEHIMHLNQLPPVRKPPIMMKCLQRDIENETASEP
ELLIMRSAKDIVNLLKPMGNATKRHEPGNCVLVHFCTASSLECARVASMV
NVLPHYFPTLPIAYVDAYEFGRFNAEFGIVSLPTLMLFHQGRPLIKFEPG
WKDTKSSFASFIMSHTNMKTVNPQAIDPIILTRAEMEPLSNKPIVQTDYY
LGLAWAFILVCLANFLRKTALWKQLVEMVQRIWRESEETQMEMVD*

GM13912.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8297-PA 295 CG8297-PA 1..295 1..295 1552 100 Plus