Clone GM14014 Report

Search the DGRC for GM14014

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:140
Well:14
Vector:pOT2
Associated Gene/Transcriptspoon-RA
Protein status:GM14014.pep: gold
Preliminary Size:3459
Sequenced Size:3334

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3249 2001-07-04 Blastp of sequenced clone
CG3249 2003-01-01 Sim4 clustering to Release 3
CG3249 2008-04-29 Release 5.5 accounting
CG3249 2008-08-15 Release 5.9 accounting
yu 2008-12-18 5.12 accounting

Clone Sequence Records

GM14014.complete Sequence

3334 bp (3334 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051641

> GM14014.complete
CCGTGCACACGTTTTTCGGCTTTCTAGAAATAATTGGGCTGCGATTCAAA
CTGTGAAGTGATTTTTTCTATATTTTTTTTTGTGTGCACAAAGGCTCTTG
TAATTCGAGGATTTGGCCATCGCGAGTGCGGGTGATTAAGCAGGCAGCTC
CGATTGTCAGAGTTTTGCGGATGCATGGCAACACTGCCGCACGCCGGCCA
TGTTATTGTGATTTGTAAAAGGTGGAACGTAGACACGTGTTTAATTCGTG
CAGCACTTTAGCGTTGAGAAAACGACAGTAAATCGCCAGCAAATAAGCAA
AAACAATACACAACTCGCGTGTGCAGTAGATAGCTTTGAAAGCACCCAAA
GATAGTGAGCAAAATAAGTTACCCAAGCGGTTCACAAAGATCTTTCAATA
TTCAGCGAAAATGGTATCCGGTCGTCCTCTACTCTACCTCTCACTGCCCG
GTGTAGCATTTATACTCGGCGTCTTTTGGTTTCGGCGTAGATATAAAAAT
TGTTTAGACAAGCCCGACGACGAGGACTCATCGGCCATCAATGACTCGTC
GATTGAACCAACTGTGCAGGCGCGCAAGGCCAACGGAGTCCTGCAGAATG
GCAAGCTGCCACAGCAGTCGGCCAGCAAGTCGATGAACATCAACGGAACT
TTAGTTAACGGTAGCGGAAGCGGTAGCGGAAGTAGCAGTGATGAGAAGGA
CAGCCCCACTACCATGTTGTATGGTAAATCAGCACCAATCAAAATCCAGA
GCAATGGACGCACTTCAAATGGCAAGCATCAGCAGCAGATCGATTCCGAA
ATACTGAAGTCAAAGATACAGGATGCCGAACACAAGACACTCTGCTCCAT
AGACGAGGATTTCGAGAATCTATCGTCGCCACGTGATTTACCCGATTCGG
TAAATACACGCGTATCCTTCTACAATCGTAAGGCTACCCAAAAGACGGTG
GAACCGGTGGTGATTAAGGCCACGCGCACACCCAAAATATCGCCAGAGAA
CTCCTTCCTGGATACCAACTACACCAACAAGGAGTGCGAGCAGAACAACA
ACTGTGAGCCCAAGGAGGAGCCCTCCAAGAAGGAGGCCGATCAGGAGGAG
CTCGAGCAGGATCAGGAGCAGACGGTGCTGAAGGAGGAAGTGGTGGATAG
CAATGGTAATCAGAAGCGCAATGTGGATGCGGCCAGTCCATCGCTGAGCA
TTTGCAGTGTGCAATCGGGCGATTCTGGCAAGGGATCCAGCTTGCCGCGC
TCGGAGGCGACACGCGTGAAAACCACCTACGAGTTCCTCTTCCCGATCAG
CTTGATTGGTCACCTGTACGGCCGCAAGCGGGCGTTTATTAACCAAATCA
AGGCCAAGACCCTGGCCAGCGTGTCTGTAGGCAAGAATCCCTACTCGGGC
AAGGTGCGCATCTGTACCATTGAGGGAACGGAGAGCGAGATTGATGCCGC
CCTGGCCATGATCCGTCAACGTTTGCCGGCCAAGCGCTATCCGAACTTCA
CCATGCAACGCATCCACTTTGCGCTTCCCCAGACCATAGTTCCTCTTTCG
ACCGAAAGCCTCTACAATCTACAACTGAAACTGATTGAGGGCATCAACAA
CGATGTGGTAGTGAGTGCGGTGCTATCTGGGTCGCATATTTTCATCCAGC
ACCCGCTGCATCCCTCGCATCCATCGTTGCCTTTGCTGCAGAAGCAGCTG
TACGATAGCTACTCCACCATGGAGGCGCCATTGCTGCCCAGTTTGGAGCT
TAGTGCCGTGTGCGTGATACCCATCAATGATGTGTGGTATCGCGTCCAGA
TTGTCGACACAGATCCCGAGGACGAGGAGCGTTGCGTAATCAAGTTTCTT
GACTTTGGTGGCTACATGAATGTCGGCTTCAACACACTGCGACAGATTCG
CACCGATTTCATGAATGTGCCCTTCCAGTCCACCGAATGCATCCTGTCCA
ACATTGAGCCCATCGGTGGCACCTGGTCCATTGAGGCGGCCGAAATCCTC
AACAAACTTACCAAAGGCATTGTCTTGCAAGCACAAGTCGCCGGCTATAA
TAGTCACAACCTACCAGAAATCTTTTTATTCGCATCCCTAGGTCCCAATA
ATGTAATCTTTATCAATAAGGAGCTGGTCGGCAGAAAGCTCGCCAAATGG
GTGGAGATGAGTGACTAACAGCCTTAGTGAACAACTCAACTAGCAACCAA
GAACTATATGAAAACTTAAAAGCAAACTTAAACAACAATCACTCAAACCC
AAATCAAGCAACTTGGCGGTGCAACAAAAAAGGAATGCTTGAGTATTGCG
CAACAGGCTCCAAGATGCGGATTCGGATTAAGGATTTCGTTAGCAGCTTT
TGCAGTTAGCATGTAGCATGTAGCACACAGCAAATAGCAATTGCCCGATT
CCAAAAGAACTGGCAAGTGCAGAGGCCTCAAAACAAAGAAAATGAAACGT
TTGTTACGTTGTTTAGATTGCGACTGAGCCCAGAGAGAGCCCCTTAATCA
TTACATAACAAACAACACACACTCGCCAAATACACACACACACACACACA
CACACACACGCATATATGAGTAAGAGCACCTAACACCACACTAACCCATA
CACATTACACAACAAGACAAACGTTTGTTTGTTGACTGTCCAGAATTGGA
TACCAAAATGGAGGGGGAAGTTAGGGATCAGCTGGGTTATGCGTTTTGTG
ACCACATGGCAACACATGGGCGGGCGGGCATGCAACGGATCGACTGGAGC
TGCAGATATTACTATACTCAGTTTATAAGTAGGCATTACTAAATAATGTA
CATAGATTTTATAACGAGAACGAGATGCGAAAAAAAAACAAAGAACATAC
TAAATAGACCCAACTAAAATACCATGCGTTCATCAGATATACAGAAAAAC
AGAAACACAGAAACATAGAAACTCTGGATAAGAATGGAGAAAAACCTGAC
AAAACTTTAGTTTTATGCTGCTATTTGCTGAGATCTGTAAATATTATATT
AGGCCTTTTTAAACAACTGATAATATCTAATCGACGAGTTCATACATTTA
CATGCATTATACATTTTTTTTTTTTTGTTAATTTGTATTCAAACTGTAAT
CAGAAAATGTATTCAAAATTCCCAACCCAAAAATAACTCACACCCGCACT
AAAGCCACAGAATGCCTAACAAAGAAAGAAACCATTTAAAAGCAGAGACA
GAGTGACGTTACGAATTCTTCATAATTATATATGCGTGTGTGCCATTGTT
AGACAACAAACCAACATTAAACATAACCAACATAACAAGCAAAACAACAA
ACACAATAATTAACAAAAAAAAAAAAAAAAAAAA

GM14014.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
yu.f 4821 yu.f 60..3394 1..3334 16605 99.9 Plus
yu-RA 3394 yu-RA 60..3394 1..3334 16605 99.9 Plus
yu.e 4123 yu.e 60..3394 1..3334 16605 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5306407..5307621 3314..2100 6075 100 Minus
chrX 22417052 chrX 5308766..5309956 1578..388 5940 99.9 Minus
chrX 22417052 chrX 5308105..5308498 1968..1575 1970 100 Minus
chrX 22417052 chrX 5313040..5313429 389..1 1900 99.7 Minus
chrX 22417052 chrX 5307902..5308036 2099..1965 675 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:23:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5413807..5415041 3334..2100 6160 99.9 Minus
X 23542271 X 5416186..5417376 1578..388 5940 99.9 Minus
X 23542271 X 5415525..5415918 1968..1575 1970 100 Minus
X 23542271 X 5420452..5420841 389..1 1885 99.5 Minus
X 23542271 X 5415322..5415456 2099..1965 675 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5421905..5423139 3334..2100 6160 99.9 Minus
X 23527363 X 5424284..5425474 1578..388 5940 99.9 Minus
X 23527363 X 5423623..5424016 1968..1575 1970 100 Minus
X 23527363 X 5428550..5428939 389..1 1895 99.4 Minus
X 23527363 X 5423420..5423554 2099..1965 675 100 Minus
Blast to na_te.dros performed 2019-03-16 09:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
Porto1 4682 Porto1 DOC5 4682bp 4361..4451 2866..2954 117 60.4 Plus

GM14014.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:45:21 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5306470..5307621 2100..3251 95 <- Minus
chrX 5307902..5308035 1966..2099 100 <- Minus
chrX 5308108..5308498 1575..1965 100 <- Minus
chrX 5308770..5309954 390..1574 100 <- Minus
chrX 5313040..5313429 1..389 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:08:13 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
yu-RC 46..1824 390..2168 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:23:12 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
yu-RC 46..1824 390..2168 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:42:22 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
spoon-RC 46..1824 390..2168 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:55 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
CG3249-RC 46..1824 390..2168 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:03 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
spoon-RC 46..1824 390..2168 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:20:45 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
yu-RA 23..3337 1..3314 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:23:11 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
yu-RA 23..3337 1..3314 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:22 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
spoon-RA 27..3341 1..3314 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:55 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
CG3249-RA 23..3337 1..3314 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:03 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
spoon-RA 27..3341 1..3314 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:21 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
X 5413827..5415041 2100..3314 100 <- Minus
X 5415322..5415455 1966..2099 100 <- Minus
X 5415528..5415918 1575..1965 100 <- Minus
X 5416190..5417374 390..1574 100 <- Minus
X 5420452..5420841 1..389 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:21 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
X 5413827..5415041 2100..3314 100 <- Minus
X 5415322..5415455 1966..2099 100 <- Minus
X 5415528..5415918 1575..1965 100 <- Minus
X 5416190..5417374 390..1574 100 <- Minus
X 5420452..5420841 1..389 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:21 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
X 5413827..5415041 2100..3314 100 <- Minus
X 5415322..5415455 1966..2099 100 <- Minus
X 5415528..5415918 1575..1965 100 <- Minus
X 5416190..5417374 390..1574 100 <- Minus
X 5420452..5420841 1..389 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:22 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5307860..5309074 2100..3314 100 <- Minus
arm_X 5309355..5309488 1966..2099 100 <- Minus
arm_X 5309561..5309951 1575..1965 100 <- Minus
arm_X 5310223..5311407 390..1574 100 <- Minus
arm_X 5314485..5314874 1..389 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:33:40 Download gff for GM14014.complete
Subject Subject Range Query Range Percent Splice Strand
X 5421925..5423139 2100..3314 100 <- Minus
X 5423420..5423553 1966..2099 100 <- Minus
X 5423626..5424016 1575..1965 100 <- Minus
X 5424288..5425472 390..1574 100 <- Minus
X 5428550..5428939 1..389 99   Minus

GM14014.pep Sequence

Translation from 410 to 2167

> GM14014.pep
MVSGRPLLYLSLPGVAFILGVFWFRRRYKNCLDKPDDEDSSAINDSSIEP
TVQARKANGVLQNGKLPQQSASKSMNINGTLVNGSGSGSGSSSDEKDSPT
TMLYGKSAPIKIQSNGRTSNGKHQQQIDSEILKSKIQDAEHKTLCSIDED
FENLSSPRDLPDSVNTRVSFYNRKATQKTVEPVVIKATRTPKISPENSFL
DTNYTNKECEQNNNCEPKEEPSKKEADQEELEQDQEQTVLKEEVVDSNGN
QKRNVDAASPSLSICSVQSGDSGKGSSLPRSEATRVKTTYEFLFPISLIG
HLYGRKRAFINQIKAKTLASVSVGKNPYSGKVRICTIEGTESEIDAALAM
IRQRLPAKRYPNFTMQRIHFALPQTIVPLSTESLYNLQLKLIEGINNDVV
VSAVLSGSHIFIQHPLHPSHPSLPLLQKQLYDSYSTMEAPLLPSLELSAV
CVIPINDVWYRVQIVDTDPEDEERCVIKFLDFGGYMNVGFNTLRQIRTDF
MNVPFQSTECILSNIEPIGGTWSIEAAEILNKLTKGIVLQAQVAGYNSHN
LPEIFLFASLGPNNVIFINKELVGRKLAKWVEMSD*

GM14014.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20944-PA 610 GF20944-PA 1..610 1..585 2449 80 Plus
Dana\GF14610-PA 578 GF14610-PA 140..426 291..546 170 25.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18497-PA 588 GG18497-PA 1..588 1..585 2860 92.7 Plus
Dere\GG24838-PA 577 GG24838-PA 140..426 291..546 183 26.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24358-PA 627 GH24358-PA 1..627 1..585 2189 70.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
spoon-PA 585 CG3249-PA 1..585 1..585 3008 100 Plus
spoon-PE 585 CG3249-PE 1..585 1..585 3008 100 Plus
spoon-PD 585 CG3249-PD 1..585 1..585 3008 100 Plus
spoon-PC 607 CG3249-PC 23..607 1..585 3008 100 Plus
papi-PD 576 CG7082-PD 140..425 291..546 185 25.8 Plus
papi-PB 576 CG7082-PB 140..425 291..546 185 25.8 Plus
papi-PC 576 CG7082-PC 140..425 291..546 185 25.8 Plus
papi-PA 576 CG7082-PA 140..425 291..546 185 25.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11050-PA 681 GI11050-PA 341..681 248..585 1515 80.9 Plus
Dmoj\GI11050-PA 681 GI11050-PA 1..258 1..245 767 63.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14640-PA 605 GL14640-PA 1..605 1..585 2403 76.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28855-PA 605 GA28855-PA 1..605 1..585 2406 76.4 Plus
Dpse\GA28909-PA 161 GA28909-PA 1..161 425..585 738 80.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12645-PA 573 GM12645-PA 1..573 1..585 2733 90.5 Plus
Dsec\GM18322-PA 576 GM18322-PA 140..425 291..546 194 26.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16260-PA 593 GD16260-PA 1..593 1..585 3027 95.8 Plus
Dsim\GD23138-PA 576 GD23138-PA 140..425 291..546 191 25.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14809-PA 655 GJ14809-PA 1..655 1..585 2230 68.4 Plus
Dvir\GJ17491-PA 579 GJ17491-PA 143..427 291..546 160 25.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25472-PA 595 GK25472-PA 1..595 1..585 2351 77.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16815-PA 590 GE16815-PA 1..590 1..585 2908 93.6 Plus
Dyak\GE18040-PA 578 GE18040-PA 140..426 291..546 183 26.2 Plus

GM14014.hyp Sequence

Translation from 410 to 2167

> GM14014.hyp
MVSGRPLLYLSLPGVAFILGVFWFRRRYKNCLDKPDDEDSSAINDSSIEP
TVQARKANGVLQNGKLPQQSASKSMNINGTLVNGSGSGSGSSSDEKDSPT
TMLYGKSAPIKIQSNGRTSNGKHQQQIDSEILKSKIQDAEHKTLCSIDED
FENLSSPRDLPDSVNTRVSFYNRKATQKTVEPVVIKATRTPKISPENSFL
DTNYTNKECEQNNNCEPKEEPSKKEADQEELEQDQEQTVLKEEVVDSNGN
QKRNVDAASPSLSICSVQSGDSGKGSSLPRSEATRVKTTYEFLFPISLIG
HLYGRKRAFINQIKAKTLASVSVGKNPYSGKVRICTIEGTESEIDAALAM
IRQRLPAKRYPNFTMQRIHFALPQTIVPLSTESLYNLQLKLIEGINNDVV
VSAVLSGSHIFIQHPLHPSHPSLPLLQKQLYDSYSTMEAPLLPSLELSAV
CVIPINDVWYRVQIVDTDPEDEERCVIKFLDFGGYMNVGFNTLRQIRTDF
MNVPFQSTECILSNIEPIGGTWSIEAAEILNKLTKGIVLQAQVAGYNSHN
LPEIFLFASLGPNNVIFINKELVGRKLAKWVEMSD*

GM14014.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
spoon-PA 585 CG3249-PA 1..585 1..585 3008 100 Plus
spoon-PE 585 CG3249-PE 1..585 1..585 3008 100 Plus
spoon-PD 585 CG3249-PD 1..585 1..585 3008 100 Plus
spoon-PC 607 CG3249-PC 23..607 1..585 3008 100 Plus
papi-PD 576 CG7082-PD 140..425 291..546 185 25.8 Plus