Clone GM14138 Report

Search the DGRC for GM14138

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:141
Well:38
Vector:pOT2
Associated Gene/TranscriptCG17598-RA
Protein status:GM14138.pep: gold
Preliminary Size:2747
Sequenced Size:2637

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17598 2001-01-01 Release 2 assignment
CG17598 2001-12-12 Blastp of sequenced clone
CG17598 2003-01-01 Sim4 clustering to Release 3
CG17598 2008-04-29 Release 5.5 accounting
CG17598 2008-08-15 Release 5.9 accounting
CG17598 2008-12-18 5.12 accounting

Clone Sequence Records

GM14138.complete Sequence

2637 bp (2637 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070531

> GM14138.complete
CGGAAAGTTGTCGCCGATCAAAACTCGCTTATTTCCACAGCCCAGTGCAC
TTGATCGGAGACCGCACGTCGCCGTTAACATAAACCATCAACCCATATAG
CGTATATAGCGTATTTCGAAAATCGAAGGGAATCAGGTGGAAGAAGGAGA
AATACAACAACAAAGCAAGCTCGCCACGTCAGTGGGAGTGAGCGAGAGCG
CAAACGAGTAGCGTACGGGAGTGAGCGAGAGACAAGAAAGCAAAATGTTT
AGCAACTTTAAGGAGCGTATTATTTCGGCCATAGCGCCCGACTTGCCACC
TCTGCCGGGCAACAGCGAGCGGGCTATTGGCTCTGGAAGCGGTCACCATC
ACAGCTCGACGCACCAGCGACTCCGGTTCGGCGCTTCCGGCGGACAGCCA
ATGCCGGACAAGTTCCCCTATGCCCGGCCGCCCTTTCTGCAGCTTCTCAC
GCCGGACGAGCTGCGCGCCTCGGCGGACCACAATGTGCGGCCCATCATCG
TGCCGCGGGACATCAACCTACTGCCCTGGGGCACCGGATACGCCGAATGC
GTCAACTCCGGAAAATCCGAGTGGAACGAGGACCAGGGTGCCTTCTGCCG
GCAAGTTCTTTCGGATCCGGAGCATAAACACCCAGATCTCCCGTACACAT
ACTTCGGCATTTTCGACGGACACGCCGGTTATGGGGCCGCACTGGCCGCC
TCGCATCAGTTTCATCACATCCTGCACGAGAAGCTAGTGGACTGCCTGGA
GCTCCTCCTGCCACGGGATGCGGATGCCACGAATGGCGGCGGGGAAGGCA
ACAAGCTGAATCCCACTTTCCCGCACCCCATTTACTTCCAGCGCCGGGTG
ACTAAGGACGAACTAATCATCGGGGCGCTGGAGAGTGCCTTCTTCAACAT
GGACTCGTTGATAGCGCAGGACTGTGATCGTTATCGAGATGCTGGGGGTT
GCACCGCCTGCGTTTCATTGTTTATCGATGGCAAGATGTATGTGGCCAAT
GCCGGCGACTCCAGAGCTGTGCTCTGCCAGCGGCGTGCCACCCCCGAGAG
GCCACAAACAAATACTGACTCCGGGATTGAGCCGGATCCCTTAGAAGCTA
GCTGTTATCCAGTGCCATTCTCGGCGGATCACACGCCTGAAACTGAGCGC
GAACGCCTGCTGAATGTGGCCAGATTGAAGCCTCACCTCATGGGGAAGCA
TTATGTGGCCATGGAGTACGCAAAGCGGCCGCATATCAAGGACATGGGCC
AGCGCATTCTCTGCCGACAGGGCACCATGCGTGGCTGGACATACAAAACT
TTGACCATGGAAGACCTCTGCATGCCGGTGGTCAATGGCGAGGGAAAAAG
AAGTCGCTTGCTGGGTACGTTGGGGGTCACGCGCGGCTTTGGCGATCACG
AGCTGCTAGCCATCAACACAGGTATTCAGATAAAACCATTTCTCACGCCT
CACCCCGATGTCAGGCAGCGGGATCTGACACAGGTGGTTTCAATTCCGGA
TGAGGACAACCGGGATGGCGACTACGGAGTGCTCGTCATGGCCACCGATG
GCCTGTGGGATGTGTCCGAAAATGACGCCGTTTCACGCACCGTCTTCCAG
ACGCTCTCCAAATATTCAACGGAGAAACATCGTTACACGATGGTCGCCCA
GGAGCTGGTGGCCCGTGCTCGTGGCAAAATCAACGACTCCGGGCATTGGC
GACTCGCAGATAGCAAGGCTGCAGCCACTGTTGATGACATCTCGGTGATT
GTTATCCCGGTTTGCCAGTATTACAAAGAGCACGTGGAGTGGACGCAAAA
CTACAAACGAGATCTCGAACATCGTCGCCGCCAGGCCCAGGCCCATATGG
CGCAGGAAGCGGTCAACGTGCTCAATGGCGTGATTGCCGAGGAAGCTCAC
GTGGTTGAAGAGGAAGAGGAAGGCGAAGTGGTTGTTCATGAGGCCAGGAC
TTCTCACAATCAAACGAAAGTTCCAAGGCGGCTGGACGGGACACTCGACG
AAACCCTGGTGGTAGAGCTGACCCCTTCACTGGAGCAAGTTCACATTCAG
AACGCGGATTCAGCGGAAGGCGAATCCAGCAAGGAGAACGTTAATGATAA
GGACAAAGAGGCGTCCACGACGAGACAGCAGTCACAGCAGCAGCAGCAAC
AACAACAACAACAACAACAGAAGGGTCGCAAGGGCAAAGGCAAGCACTAG
GACGAAGGTAATGCCACCCAGGCCGATACATTAGTCGTAATTAGACTAAG
CAATATTCGAACGGATATGGATGCGGCTGAAATGGGCACATCTATATTTG
TTTTTACACTCCACACGAAAGGACAAATTCAAAACATTCAAAGTTTACAT
AATTTGCTTATGTACGCCCCCAAACAAACAAAACAGAAACGCATGTCAAC
TTAATGAAACTGTACAATAATTTGCGGCAATGAAGTGTATTTATTTTATC
CTAAAAGATTGAATGACGAACAAAGCCCAATAGTAACGGAGGCGATATTT
TCAATAACGCAAATAAAAACCTTATGATTCCAAATGAAAGCATAAAAAGT
AATTTAAGCTGCGTATAACATAAGCCAACTATTAATATAAAATATAATTA
CAAATATTGTTAACTAAACTAAAAAAAAAAAAAAAAA

GM14138.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17598-RA 3201 CG17598-RA 73..2694 1..2622 13110 100 Plus
CG17598.d 4231 CG17598.d 25..2646 1..2622 13110 100 Plus
CG17598.a 2745 CG17598.a 52..2670 1..2622 13040 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21933222..21934688 2066..600 7335 100 Minus
chrX 22417052 chrX 21935707..21936307 601..1 3005 100 Minus
chrX 22417052 chrX 21932407..21932961 2620..2066 2775 100 Minus
chrX 22417052 chrX 16790072..16790111 2134..2173 185 97.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:23:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22537256..22538722 2066..600 7335 100 Minus
X 23542271 X 22539741..22540341 601..1 3005 100 Minus
X 23542271 X 22536439..22536995 2622..2066 2785 100 Minus
X 23542271 X 16900442..16900481 2134..2173 185 97.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22522348..22523814 2066..600 7335 100 Minus
X 23527363 X 22524833..22525433 601..1 3005 100 Minus
X 23527363 X 22521531..22522087 2622..2066 2785 100 Minus
Blast to na_te.dros performed 2019-03-15 12:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6745..6830 2125..2207 170 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6766..6826 2125..2187 166 76.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6787..6871 2125..2206 165 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6797 2126..2197 164 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2621..2665 2125..2169 162 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2624..2672 2125..2173 155 79.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6847 2126..2173 150 79.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2489..2534 2125..2170 149 80.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2423 2125..2206 148 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2409 2126..2197 146 68.5 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3281..3357 2125..2195 145 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6827..6919 2116..2206 144 67.4 Plus
roo 9092 roo DM_ROO 9092bp 1069..1120 2122..2173 143 75 Plus
roo 9092 roo DM_ROO 9092bp 1031..1173 2032..2172 142 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2399..2442 2125..2168 139 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2444..2488 2125..2169 135 77.8 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 816..887 2097..2169 128 65.8 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 977..1245 2134..2385 125 54.4 Plus
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2290..2400 2616..2497 119 60.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1547..1597 2125..2174 117 72.5 Plus

GM14138.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:49:37 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21933222..21934687 601..2066 100 <- Minus
chrX 21935708..21936307 1..600 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:08:21 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
CG17598-RA 1..1956 245..2200 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:17:49 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
CG17598-RA 1..1956 245..2200 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:50:18 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
CG17598-RA 1..1956 245..2200 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:43:56 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
CG17598-RA 1..1956 245..2200 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:10:30 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
CG17598-RA 1..1956 245..2200 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:50:36 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
CG17598-RA 1..2620 1..2620 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:17:49 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
CG17598-RA 23..2642 1..2620 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:50:18 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
CG17598-RA 43..2662 1..2620 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:43:56 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
CG17598-RA 1..2620 1..2620 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:10:30 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
CG17598-RA 43..2662 1..2620 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:49:37 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
X 22536441..22536994 2067..2620 100 <- Minus
X 22537256..22538721 601..2066 100 <- Minus
X 22539742..22540341 1..600 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:49:37 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
X 22536441..22536994 2067..2620 100 <- Minus
X 22537256..22538721 601..2066 100 <- Minus
X 22539742..22540341 1..600 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:49:37 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
X 22536441..22536994 2067..2620 100 <- Minus
X 22537256..22538721 601..2066 100 <- Minus
X 22539742..22540341 1..600 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:50:18 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21938277..21938830 2067..2620 100 <- Minus
arm_X 21939092..21940557 601..2066 100 <- Minus
arm_X 21941578..21942177 1..600 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:20:09 Download gff for GM14138.complete
Subject Subject Range Query Range Percent Splice Strand
X 22521533..22522086 2067..2620 100 <- Minus
X 22522348..22523813 601..2066 100 <- Minus
X 22524834..22525433 1..600 100   Minus

GM14138.hyp Sequence

Translation from 244 to 2199

> GM14138.hyp
MFSNFKERIISAIAPDLPPLPGNSERAIGSGSGHHHSSTHQRLRFGASGG
QPMPDKFPYARPPFLQLLTPDELRASADHNVRPIIVPRDINLLPWGTGYA
ECVNSGKSEWNEDQGAFCRQVLSDPEHKHPDLPYTYFGIFDGHAGYGAAL
AASHQFHHILHEKLVDCLELLLPRDADATNGGGEGNKLNPTFPHPIYFQR
RVTKDELIIGALESAFFNMDSLIAQDCDRYRDAGGCTACVSLFIDGKMYV
ANAGDSRAVLCQRRATPERPQTNTDSGIEPDPLEASCYPVPFSADHTPET
ERERLLNVARLKPHLMGKHYVAMEYAKRPHIKDMGQRILCRQGTMRGWTY
KTLTMEDLCMPVVNGEGKRSRLLGTLGVTRGFGDHELLAINTGIQIKPFL
TPHPDVRQRDLTQVVSIPDEDNRDGDYGVLVMATDGLWDVSENDAVSRTV
FQTLSKYSTEKHRYTMVAQELVARARGKINDSGHWRLADSKAAATVDDIS
VIVIPVCQYYKEHVEWTQNYKRDLEHRRRQAQAHMAQEAVNVLNGVIAEE
AHVVEEEEEGEVVVHEARTSHNQTKVPRRLDGTLDETLVVELTPSLEQVH
IQNADSAEGESSKENVNDKDKEASTTRQQSQQQQQQQQQQQQKGRKGKGK
H*

GM14138.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17598-PB 651 CG17598-PB 1..651 1..651 3460 100 Plus
CG17598-PA 651 CG17598-PA 1..651 1..651 3460 100 Plus

GM14138.pep Sequence

Translation from 244 to 2199

> GM14138.pep
MFSNFKERIISAIAPDLPPLPGNSERAIGSGSGHHHSSTHQRLRFGASGG
QPMPDKFPYARPPFLQLLTPDELRASADHNVRPIIVPRDINLLPWGTGYA
ECVNSGKSEWNEDQGAFCRQVLSDPEHKHPDLPYTYFGIFDGHAGYGAAL
AASHQFHHILHEKLVDCLELLLPRDADATNGGGEGNKLNPTFPHPIYFQR
RVTKDELIIGALESAFFNMDSLIAQDCDRYRDAGGCTACVSLFIDGKMYV
ANAGDSRAVLCQRRATPERPQTNTDSGIEPDPLEASCYPVPFSADHTPET
ERERLLNVARLKPHLMGKHYVAMEYAKRPHIKDMGQRILCRQGTMRGWTY
KTLTMEDLCMPVVNGEGKRSRLLGTLGVTRGFGDHELLAINTGIQIKPFL
TPHPDVRQRDLTQVVSIPDEDNRDGDYGVLVMATDGLWDVSENDAVSRTV
FQTLSKYSTEKHRYTMVAQELVARARGKINDSGHWRLADSKAAATVDDIS
VIVIPVCQYYKEHVEWTQNYKRDLEHRRRQAQAHMAQEAVNVLNGVIAEE
AHVVEEEEEGEVVVHEARTSHNQTKVPRRLDGTLDETLVVELTPSLEQVH
IQNADSAEGESSKENVNDKDKEASTTRQQSQQQQQQQQQQQQKGRKGKGK
H*

GM14138.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21269-PA 645 GF21269-PA 1..645 1..651 2744 81.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17512-PA 643 GG17512-PA 1..620 1..623 3075 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24893-PA 656 GH24893-PA 1..653 1..649 2287 68.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17598-PB 651 CG17598-PB 1..651 1..651 3460 100 Plus
CG17598-PA 651 CG17598-PA 1..651 1..651 3460 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14288-PA 635 GI14288-PA 1..634 1..646 2240 65.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13426-PA 541 GL13426-PA 69..541 170..651 1724 75.6 Plus
Dper\GL13426-PA 541 GL13426-PA 1..82 1..97 359 73.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14572-PA 630 GA14572-PA 1..630 1..651 2584 80.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11721-PA 637 GM11721-PA 1..637 1..651 3278 94.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15484-PA 638 GD15484-PA 1..638 1..651 3315 94.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19346-PA 648 GJ19346-PA 1..548 1..556 2479 83.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25159-PA 652 GK25159-PA 1..652 1..649 2404 72.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15267-PA 643 GE15267-PA 1..643 1..651 3144 93.4 Plus