Clone GM14141 Report

Search the DGRC for GM14141

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:141
Well:41
Vector:pOT2
Associated Gene/TranscriptSu(fu)-RA
Protein status:GM14141.pep: gold
Preliminary Size:1801
Sequenced Size:1607

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6054 2001-01-01 Release 2 assignment
CG6054 2001-11-09 Blastp of sequenced clone
CG6054 2003-01-01 Sim4 clustering to Release 3
Su(fu) 2008-04-29 Release 5.5 accounting
Su(fu) 2008-08-15 Release 5.9 accounting
Su(fu) 2008-12-18 5.12 accounting

Clone Sequence Records

GM14141.complete Sequence

1607 bp (1607 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069285

> GM14141.complete
ACTGGATGAAATGGCCGAGGCGAATTTGGACAAAAAACCTGAGGTGAAGC
CTCCGCCGGGCCTTAAGGCCATCATAGACCACCTCGGGCAGGTGTACCCC
AACCAGCCGAACCCGCTGCAGGTGACCACACTGCTCAAGTACTGGCTGGG
CGGTCAGGATCCGTTGGACTACATTAGCATGTACAACTATCCCGGAGATG
TGGATAGGAACGTTCCGCCGCACTGGCACTACATTAGTTTCGGACTCAGC
GACCTACACGGGGACGAGCGAGTCCACTTGCGCGAGGAGGGCGTCACTCG
GTCTGGCATGGGGTTCGAGTTGACCTTTCGCTTGGCCAAAACAGAAATAG
AGCTAAAGCAGCAGATTGAGAACCCGGAAAAGCCCCAAAGACCGCCCACC
TGGCCGGCGAACCTGTTGCAGGCCATCGGACGCTACTGTTTTCAAACAGG
CAACGGATTGTGCTTCGGAGACAACATCCCGTGGCGCAAGAGTCTGGATG
GCAGTACCACTTCCAAGCTACAGAACCTGCTCGTCGCCCAGGACCCGCAG
TTGGGCTGCATCGACACTCCCACGGGCACGGTGGACTTCTGCCAGATCGT
CGGCGTCTTTGACGACGAACTTGAGCAGGCATCGCGTTGGAACGGGCGCG
GTGTGCTCAACTTCCTTCGCCAGGATATGCAAACTGGCGGTGATTGGCTG
GTGACTAACATGGATCGCCAGATGAGCGTCTTCGAACTGTTTCCCGAAAC
GCTGCTCAACCTACAGGACGATCTGGAGAAGCAGGGTTCCGATCTGGCCG
GCGTTAATGCAGATTTTACGTTCCGTGAGCTGAAACCTACCAAGGAGGTG
AAGGAGGAGGTGGATTTCCAGGCGCTGAGCGAGAAGTGCGCCAACGACGA
AAACAATCGGCAGCTGACGGATACGCAAATGAAACGCGAGGAACCAAGCT
TTCCACAATCCATGTCGATGAGCAGCAATTCGCTGCACAAGTCCTGTCCC
CTGGACTTTCAAGCGCAGGCACCAAACTGCATTTCACTGGACGGTATTGA
GATTACCCTCGCACCTGGTGTGGCCAAGTACCTCCTACTGGCCATCAAGG
ATCGCATCCGACATGGGCGCCACTTCACCTTCAAGGCTCAGCATCTGGCG
CTCACTTTGGTGGCGGAATCCGTCACCGGCTCGGCGGTGACAGTGAACGA
ACCGTACGGCGTGCTGGGCTACTGGATTCAGGTCCTGATTCCCGATGAAC
TGGTGCCGCGCCTGATGGAAGACTTCCGCAGCGCGGGCCTAGACGAGAAA
TGCGAGCCCAAGGAGCGACTGGAGCTCGAGTGGCCCGACAAGAATCTGAA
GCTGATCATCGACCAGCCGGAACCTGTGCTGCCCATGTCGCTCGACGCTG
CTCCTCTGAAAATGTGATGGTGTCCATTGGTTAGCTAGTAGTTATTTAAA
TTATTTGAATTGAATCTTCCACTAACGAGTAAGTTTTACATTTATACATC
TCATCTAACACAATGCACGTGGCCTTTGCTCCTCGCCGGAGTCCAGTCAA
AATATACAAACACATACATATACCCGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

GM14141.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Su(fu)-RA 1846 Su(fu)-RA 265..1843 1..1579 7805 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8515114..8516689 1576..1 7775 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:23:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12689870..12691448 1579..1 7805 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12430701..12432279 1579..1 7805 99.6 Minus
Blast to na_te.dros performed on 2019-03-16 09:00:54 has no hits.

GM14141.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:01:52 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8515114..8516689 1..1576 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:08:24 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
Su(fu)-RA 1..1407 11..1417 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:28:29 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
Su(fu)-RA 1..1407 11..1417 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:55:49 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
Su(fu)-RA 1..1407 11..1417 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:56:05 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
Su(fu)-RA 1..1407 11..1417 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:56:21 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
Su(fu)-RA 1..1407 11..1417 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:05:41 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
Su(fu)-RA 265..1840 1..1576 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:28:29 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
Su(fu)-RA 265..1840 1..1576 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:49 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
Su(fu)-RA 265..1840 1..1576 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:56:05 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
Su(fu)-RA 265..1840 1..1576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:56:21 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
Su(fu)-RA 21..1596 1..1576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:01:52 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12689873..12691448 1..1576 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:01:52 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12689873..12691448 1..1576 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:01:52 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12689873..12691448 1..1576 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:49 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8515595..8517170 1..1576 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:32:14 Download gff for GM14141.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12430704..12432279 1..1576 99   Minus

GM14141.hyp Sequence

Translation from 0 to 1416

> GM14141.hyp
LDEMAEANLDKKPEVKPPPGLKAIIDHLGQVYPNQPNPLQVTTLLKYWLG
GQDPLDYISMYNYPGDVDRNVPPHWHYISFGLSDLHGDERVHLREEGVTR
SGMGFELTFRLAKTEIELKQQIENPEKPQRPPTWPANLLQAIGRYCFQTG
NGLCFGDNIPWRKSLDGSTTSKLQNLLVAQDPQLGCIDTPTGTVDFCQIV
GVFDDELEQASRWNGRGVLNFLRQDMQTGGDWLVTNMDRQMSVFELFPET
LLNLQDDLEKQGSDLAGVNADFTFRELKPTKEVKEEVDFQALSEKCANDE
NNRQLTDTQMKREEPSFPQSMSMSSNSLHKSCPLDFQAQAPNCISLDGIE
ITLAPGVAKYLLLAIKDRIRHGRHFTFKAQHLALTLVAESVTGSAVTVNE
PYGVLGYWIQVLIPDELVPRLMEDFRSAGLDEKCEPKERLELEWPDKNLK
LIIDQPEPVLPMSLDAAPLKM*

GM14141.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
Su(fu)-PA 468 CG6054-PA 1..468 4..471 2493 100 Plus

GM14141.pep Sequence

Translation from 10 to 1416

> GM14141.pep
MAEANLDKKPEVKPPPGLKAIIDHLGQVYPNQPNPLQVTTLLKYWLGGQD
PLDYISMYNYPGDVDRNVPPHWHYISFGLSDLHGDERVHLREEGVTRSGM
GFELTFRLAKTEIELKQQIENPEKPQRPPTWPANLLQAIGRYCFQTGNGL
CFGDNIPWRKSLDGSTTSKLQNLLVAQDPQLGCIDTPTGTVDFCQIVGVF
DDELEQASRWNGRGVLNFLRQDMQTGGDWLVTNMDRQMSVFELFPETLLN
LQDDLEKQGSDLAGVNADFTFRELKPTKEVKEEVDFQALSEKCANDENNR
QLTDTQMKREEPSFPQSMSMSSNSLHKSCPLDFQAQAPNCISLDGIEITL
APGVAKYLLLAIKDRIRHGRHFTFKAQHLALTLVAESVTGSAVTVNEPYG
VLGYWIQVLIPDELVPRLMEDFRSAGLDEKCEPKERLELEWPDKNLKLII
DQPEPVLPMSLDAAPLKM*

GM14141.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17874-PA 476 GF17874-PA 4..475 2..468 2099 84.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17105-PA 472 GG17105-PA 1..472 1..468 2430 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19571-PA 475 GH19571-PA 4..472 2..463 1902 76.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Su(fu)-PA 468 CG6054-PA 1..468 1..468 2493 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22264-PA 474 GI22264-PA 3..473 2..466 1982 78.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23115-PA 480 GL23115-PA 1..480 1..468 2105 81.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19325-PA 480 GA19325-PA 1..480 1..468 2103 81.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25989-PA 478 GM25989-PA 1..472 1..468 2465 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20549-PA 478 GD20549-PA 1..472 1..468 2474 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Su(fu)-PA 473 GJ24055-PA 3..472 2..466 1998 78.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13559-PA 477 GK13559-PA 6..477 4..464 2015 80.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24494-PA 472 GE24494-PA 1..472 1..468 2440 96.4 Plus