Clone GM14163 Report

Search the DGRC for GM14163

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:141
Well:63
Vector:pOT2
Associated Gene/TranscriptCG9140-RA
Protein status:GM14163.pep: gold
Preliminary Size:1590
Sequenced Size:1549

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9140 2001-01-01 Release 2 assignment
CG9140 2001-07-04 Blastp of sequenced clone
CG9140 2003-01-01 Sim4 clustering to Release 3
CG9140 2008-04-29 Release 5.5 accounting
CG9140 2008-08-15 Release 5.9 accounting
CG9140 2008-12-18 5.12 accounting

Clone Sequence Records

GM14163.complete Sequence

1549 bp (1549 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051642

> GM14163.complete
TTGTCCCGAAAATGGCTGCAATTGTGCGATTTAATTTGTTAACAAAGCCG
CAGATTGTTGCGACTTTGCCGGCCAGCCTGCATGTGCAGCGCTTCCAGAG
CACCCAGGCCCCACCTCCGGGCACTCCTCCGCCACAGACGAAGACCAAAT
TCGGTCCGCTGGCGGACGAAGATCGCATCTTCACCAACCTCTATGGACGA
CATGACTGGAGGCTGAAGGGAGCTTTGAAGCGCGGCGACTGGTACAAAAC
CAAGGAGATTGTGCTGAAGGGGGCTGACTGGATCGTTAACGAGATCAAGA
CGTCCGGCCTGCGCGGACGTGGAGGAGCTGGCTTCCCCAGCGGTATGAAG
TGGTCCTTCATGAACAAGCCCGGAGATGGACGCCCCAAGTACTTGGTGGT
GAATGCCGATGAGGGAGAGCCTGGCACCTGCAAGGATCGCGAGATCATGC
GCCACGATCCACACAAGCTGGTGGAGGGCTGTCTGATTGCCGGACGCGCC
ATGGGCGCCCAGGCTGCCTACATCTACATTCGTGGCGAGTTCTACAACGA
GGCTTCCAACATGCAACTGGCCATTGCCGAGGCATACCAGGCTGGTCTGA
TTGGAAAGAATGCGTGCGGAACTGGCTACGACTTCGACGTCTTCATGCAC
CGCGGCGCTGGAGCTTACATTTGCGGCGAGGAGACCGCTCTGATCGAATC
GCTGGAAGGAAAGCAGGGAAAGCCACGCTTGAAGCCGCCATTCCCAGCTG
ATGTGGGTGTGTTCGGTTGCCCAACCACAGTTACCAATGTGGAGACCGTG
GCCGTTGCACCAACCATTTGCCGTCGTGGCGGTGTATGGTTCGCCAGCTT
CGGTCGCACCCGTAACTCGGGCACCAAGCTCTTCAACATTTCGGGACATG
TCAACAGGCCCTGCACTGTGGAGGAGGAAATGTCCATCCCACTCAAGGAG
TTGATTGAGCGCCACTGCGGAGGCGTCACTGGTGGATGGGATAATCTGCT
AGGCGTCATTCCCGGCGGCTCTTCCACCCCCATCATACCCAAAAATGTCT
GCGACGATGTTATCATGGACTTCGATGGCCTAATTGCCGCTCAGACTTCG
CTGGGTACTGCGGCTATCATCGTAATGGACAAGTCGACGGATGTGATAAA
GGCTATTGCCAGGCTAATTTCATTCTATAAGCATGAGAGCTGTGGCCAGT
GCACGCCATGCCGAGAGGGAATCGGTTGGATGAACAAAATCATGACTCGA
TTTGTTAAGGGTGACGCCCAGCCCGCTGAGATCGATATGCTGTGGGAGAT
TTCCAAACAAATTGAGGGACACACTATTTGTGCGCTTGGTGATGGTGCCG
CCTGGCCAGTCCAGGGCCTCATTCGTCACTTCCGGCCCGAGATCGAGAAA
CGTATGCAACTGCATGCAAAGCGCGTCAGCAATTAAGATACAAAGTTATA
GCTAATTTTATTGATTTCATTAACCAGAGCGCGACTTGATGCCTATAAAG
TGTATAGTTCTCTAAACGTTTCAATAAGCCTAAAAAAAAAAAAAAAAAA

GM14163.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-RA 1714 CG9140-RA 104..1636 1..1533 7620 99.8 Plus
CG34180-RB 379 CG34180-RB 279..379 1533..1433 505 100 Minus
CG11423-RA 2143 CG11423-RA 909..1189 279..559 490 78.2 Plus
CG11423-RA 2143 CG11423-RA 1233..1571 603..941 420 74.9 Plus
CG11423-RA 2143 CG11423-RA 741..889 111..259 205 75.8 Plus
CG11423-RA 2143 CG11423-RA 1803..1885 1173..1255 175 80.7 Plus
CG11423-RA 2143 CG11423-RA 1908..2027 1278..1397 150 75 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6060238..6061073 1249..414 4150 99.8 Minus
chr2L 23010047 chr2L 6061125..6061487 419..57 1785 99.4 Minus
chr2L 23010047 chr2L 6059893..6060175 1531..1249 1415 100 Minus
chr2R 21145070 chr2R 13483065..13484351 111..1397 1015 72.3 Plus
chr2L 23010047 chr2L 6061693..6061749 57..1 285 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:23:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6061187..6062022 1249..414 4150 99.8 Minus
2L 23513712 2L 6062074..6062436 419..57 1785 99.4 Minus
2L 23513712 2L 6060840..6061124 1533..1249 1425 100 Minus
2R 25286936 2R 17596007..17597293 111..1397 1035 72 Plus
2L 23513712 2L 6062642..6062698 57..1 285 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6061187..6062022 1249..414 4150 99.7 Minus
2L 23513712 2L 6062074..6062436 419..57 1785 99.4 Minus
2L 23513712 2L 6060840..6061124 1533..1249 1425 100 Minus
2R 25260384 2R 17597374..17597654 279..559 490 78.2 Plus
2R 25260384 2R 17597698..17598036 603..941 420 74.9 Plus
2L 23513712 2L 6062642..6062698 57..1 285 100 Minus
2R 25260384 2R 17597206..17597354 111..259 205 75.8 Plus
2R 25260384 2R 17598268..17598350 1173..1255 175 80.7 Plus
2R 25260384 2R 17598373..17598492 1278..1397 150 75 Plus
Blast to na_te.dros performed 2019-03-15 17:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 5849..5945 1116..1214 129 61.6 Plus

GM14163.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:58:43 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6059893..6060174 1250..1531 100 <- Minus
chr2L 6060238..6061072 415..1249 99 <- Minus
chr2L 6061130..6061486 58..414 99 <- Minus
chr2L 6061693..6061749 1..57 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:08:27 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 1..1425 12..1436 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:23:02 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 1..1425 12..1436 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:51:06 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 1..1425 12..1436 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:44 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 1..1425 12..1436 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:51:08 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 1..1425 12..1436 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:20:33 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 60..1590 1..1531 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:23:02 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 60..1590 1..1531 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:51:06 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 60..1590 1..1531 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:44 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 60..1590 1..1531 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:51:08 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 60..1590 1..1531 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:58:43 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6060842..6061123 1250..1531 100 <- Minus
2L 6061187..6062021 415..1249 99 <- Minus
2L 6062079..6062435 58..414 99 <- Minus
2L 6062642..6062698 1..57 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:58:43 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6060842..6061123 1250..1531 100 <- Minus
2L 6061187..6062021 415..1249 99 <- Minus
2L 6062079..6062435 58..414 99 <- Minus
2L 6062642..6062698 1..57 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:58:43 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6060842..6061123 1250..1531 100 <- Minus
2L 6061187..6062021 415..1249 99 <- Minus
2L 6062079..6062435 58..414 99 <- Minus
2L 6062642..6062698 1..57 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:51:06 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6060842..6061123 1250..1531 100 <- Minus
arm_2L 6061187..6062021 415..1249 99 <- Minus
arm_2L 6062079..6062435 58..414 99 <- Minus
arm_2L 6062642..6062698 1..57 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:33:30 Download gff for GM14163.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6060842..6061123 1250..1531 100 <- Minus
2L 6061187..6062021 415..1249 99 <- Minus
2L 6062079..6062435 58..414 99 <- Minus
2L 6062642..6062698 1..57 100   Minus

GM14163.hyp Sequence

Translation from 2 to 1435

> GM14163.hyp
VPKMAAIVRFNLLTKPQIVATLPASLHVQRFQSTQAPPPGTPPPQTKTKF
GPLADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKT
SGLRGRGGAGFPSGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMR
HDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLI
GKNACGTGYDFDVFMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPAD
VGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNISGHV
NRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVC
DDVIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQC
TPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAA
WPVQGLIRHFRPEIEKRMQLHAKRVSN*

GM14163.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-PB 474 CG9140-PB 1..474 4..477 2544 100 Plus
CG9140-PA 474 CG9140-PA 1..474 4..477 2544 100 Plus
CG11423-PA 702 CG11423-PA 240..677 35..472 1934 79.7 Plus
CG8102-PA 481 CG8102-PA 43..479 38..473 1228 52.7 Plus
CG8102-PB 462 CG8102-PB 43..460 38..473 1127 49.8 Plus

GM14163.pep Sequence

Translation from 11 to 1435

> GM14163.pep
MAAIVRFNLLTKPQIVATLPASLHVQRFQSTQAPPPGTPPPQTKTKFGPL
ADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGL
RGRGGAGFPSGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDP
HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKN
ACGTGYDFDVFMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGV
FGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNISGHVNRP
CTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDV
IMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPC
REGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPV
QGLIRHFRPEIEKRMQLHAKRVSN*

GM14163.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15407-PA 477 GF15407-PA 1..473 1..473 2355 96 Plus
Dana\GF11875-PA 520 GF11875-PA 66..501 31..465 1190 51.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10139-PA 474 GG10139-PA 1..474 1..474 2525 98.9 Plus
Dere\GG22361-PA 481 GG22361-PA 38..479 34..470 1223 52.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10936-PA 476 GH10936-PA 1..476 1..474 2315 94.3 Plus
Dgri\GH21461-PA 546 GH21461-PA 102..544 26..470 1199 52.6 Plus
Dgri\GH25296-PA 833 GH25296-PA 102..460 26..386 1000 54.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
ND-51-PB 474 CG9140-PB 1..474 1..474 2544 100 Plus
ND-51-PA 474 CG9140-PA 1..474 1..474 2544 100 Plus
ND-51L1-PA 702 CG11423-PA 240..677 32..469 1934 79.7 Plus
ND-51L2-PA 481 CG8102-PA 43..479 35..470 1228 52.7 Plus
ND-51L2-PB 462 CG8102-PB 43..460 35..470 1127 49.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13499-PA 476 GI13499-PA 1..476 1..474 2316 94.3 Plus
Dmoj\GI19938-PA 470 GI19938-PA 64..470 43..470 1162 52.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19080-PA 477 GL19080-PA 1..477 1..474 2446 95.6 Plus
Dper\GL11014-PA 445 GL11014-PA 11..439 19..465 1216 51.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21571-PA 477 GA21571-PA 1..477 1..474 2390 95.4 Plus
Dpse\GA30486-PA 648 GA30486-PA 205..636 35..466 1929 79.6 Plus
Dpse\GA20825-PA 445 GA20825-PA 11..439 19..465 1209 51.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17964-PA 435 GM17964-PA 5..435 16..474 1990 88.5 Plus
Dsec\GM20146-PA 481 GM20146-PA 49..479 41..470 1229 53 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22602-PA 499 GD22602-PA 1..499 1..474 2279 86.8 Plus
Dsim\GD25625-PA 481 GD25625-PA 49..479 41..470 1229 53 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12140-PA 476 GJ12140-PA 1..476 1..474 2328 95.2 Plus
Dvir\GJ15106-PA 501 GJ15106-PA 60..491 32..465 1200 53.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15392-PA 478 GK15392-PA 1..478 1..474 2467 96.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18950-PA 474 GE18950-PA 1..474 1..474 2525 99.4 Plus
Dyak\GE12249-PA 481 GE12249-PA 38..479 34..470 1221 52.1 Plus