Clone GM14349 Report

Search the DGRC for GM14349

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:143
Well:49
Vector:pOT2
Associated Gene/TranscriptCG7920-RA
Protein status:GM14349.pep: gold
Preliminary Size:1885
Sequenced Size:1793

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7920 2001-01-01 Release 2 assignment
CG7920 2001-11-09 Blastp of sequenced clone
CG7920 2003-01-01 Sim4 clustering to Release 3
CG7920 2008-04-29 Release 5.5 accounting
CG7920 2008-08-15 Release 5.9 accounting
CG7920 2008-12-18 5.12 accounting

Clone Sequence Records

GM14349.complete Sequence

1793 bp (1793 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069288

> GM14349.complete
CCGCAGCGGACGGAACTCAGCGCAGCAGTCTCTCCCCAGTGAAAACCCAC
CACTCATCGCCTCCTGCATCTCGCGGACTTCTCGCTTAACCCTTTGCGAC
GTGCGTGCCTACAACAGAGTACTCAGTACACACTACTACACTACACAGTC
CACCATGAGCAAACAATTGGCGCGCCATGTGGGCCAGCTGAACAGCCTCC
TGAAGACGGCGGCCACCGCCTCCTCGGTCTCCGCCCACAACAACTACTTC
ACCTACGTGCGGGAGCTGTCGCATCCCATCGCTCGAGAGCCTCCAATCGT
CAAGCCGGAAGAGGCCGTGGCATGTGTAAAATCCGGTGACACGGTTTTCG
CCGGAGGAGCAGCCGCCACGCCCGTGGCTCTGCTGAACGCGATGGCCAAG
CACGGAAAGAGCAACAACCTGGAGTGCGTCACGGTGTGCCACATGCACAC
GGAGGGTCCTGGCGAGTACGCCAAGCCGGAGTACAAGGACCATTTCCGTT
CAAACTCCTTCTTCATGGGCGCCAACGTGCGCAAGGCTGTTGCCGACGGT
CGTGGCGATAATGTGCCGATCTTCCTTCACGAGATCCCGAATCTTTTCTA
CAAGCAGATCGTAAAGCCAGATGTGTCCTTCATCCACGTGTCGCCGCCGG
ATAACCACGGCTACTGCTCCCTCGGCACCAGCGTCGATTGTGTGCGCGCT
GCGCTGCTCAACTCGAAGCTCATTGTGGCTCAAATCAATCCCAAGATGCC
GCGCACCTTCGGCGATGCCATCATTCACAAGTCTCACTTCGACCTCGCCA
TCGAGGTGACCGATGATCTGCCTCAGCACGGAACTGGTAAGATTTCCGAA
GTGGAGAAGAAGATCGGCAAGCTCATTGCCGAGAACCTCGTCAAGGACGG
CGCCACCCTGCAGATGGGCATTGGCAGCATCCCAGACGCCGTACTCGCCG
CCCTGCACAACCACAAGGATCTGGGCATCCACTCCGAGATGTTCGCCAAC
GGTGTCGTTGAGCTCGTGCGCAAGGGATGCGTCACCAACAGCAAGAAGAA
GATGCACCAGGGCAGAATTGTGGGCTCCTTCCTCATCGGTGACAAGGCTC
TGTACGACTTCGTGGACAACAATCCCTTCATCGAGATGTACGCCATCGAC
TATGTGAACAACACCAGCATTGTGAAACAGCAGCCTCGAATGACGGCCAT
CAACAGCTGCATCGAGGTGGATCTGACTGGACAGGTGTGCTCAGACTCGA
TTGGTCCCCGCTTCTACTCCGGCTTCGGCGGACAGGTGGACTTCATTCGC
GGAGCGGCGGAGGGTCTCGATGGACTGGGTGTGCCAATTATTGCCATGCC
ATCGACCACCAACAAGGGCGAGAGCAAGATTGTTCCCACGCTGAAGGAAG
GCGCTGGCGTCGTCACTTCGCGTGCCCACGTCCACTACGTCGTCACGGAG
CATGGAATCGCTTCGCTGTTCGGCAAGAACGTGCGACAGAGGATGTACGA
ACTTATCCAGATCGCCGATCCCAAGCACCGCGAGACCCTGGAGAAACAAG
CCTTCGAGCGCATCAAGGTTATGCCCTCGCCGAACTAAGCAAGCACTGAA
GAAGCACTAGAGATCACTATTTACTAGCAGCGACCCGCAATCTTTGAAGG
CATTCCCGAAATCGCTTTGATCCACTTCATAGAACTGCAATCATGATAGC
CCTTTAGCATTACCAAATCTGAAATTTCAATTGATGAGTAACGAATTGAT
GGGAGAAATAAAACTGAAATTGATTAAAAAAAAAAAAAAAAAA

GM14349.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-RA 2149 CG7920-RA 309..2086 1..1778 8770 99.5 Plus
CG7920-RB 823 CG7920-RB 216..554 1..339 1695 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25832866..25833508 1775..1133 3185 99.7 Minus
chr3R 27901430 chr3R 25833593..25833998 1133..728 2000 99.5 Minus
chr3R 27901430 chr3R 25834059..25834452 728..335 1925 99.2 Minus
chr3R 27901430 chr3R 25837226..25837564 339..1 1695 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:23:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30010473..30011118 1778..1133 3155 99.2 Minus
3R 32079331 3R 30011203..30011608 1133..728 2000 99.5 Minus
3R 32079331 3R 30011669..30012062 728..335 1955 99.7 Minus
3R 32079331 3R 30014811..30015149 339..1 1695 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29751304..29751949 1778..1133 3155 99.2 Minus
3R 31820162 3R 29752034..29752439 1133..728 2000 99.5 Minus
3R 31820162 3R 29752500..29752893 728..335 1955 99.7 Minus
3R 31820162 3R 29755642..29755980 339..1 1695 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:12:38 has no hits.

GM14349.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:13:28 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25832866..25833507 1134..1775 99 <- Minus
chr3R 25833593..25833997 729..1133 99 <- Minus
chr3R 25834059..25834451 336..728 99 <- Minus
chr3R 25837230..25837564 1..335 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:08:43 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 1..1434 155..1588 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:28:32 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 1..1434 155..1588 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:49:01 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 1..1434 155..1588 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:56:08 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 1..1434 155..1588 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:01:32 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 1..1434 155..1588 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:05:45 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 216..1990 1..1775 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:28:32 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 216..1990 1..1775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:49:01 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 136..1910 1..1775 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:56:08 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 216..1990 1..1775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:01:32 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 136..1910 1..1775 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:28 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30010476..30011117 1134..1775 99 <- Minus
3R 30011203..30011607 729..1133 99 <- Minus
3R 30011669..30012061 336..728 99 <- Minus
3R 30014815..30015149 1..335 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:28 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30010476..30011117 1134..1775 99 <- Minus
3R 30011203..30011607 729..1133 99 <- Minus
3R 30011669..30012061 336..728 99 <- Minus
3R 30014815..30015149 1..335 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:28 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30010476..30011117 1134..1775 99 <- Minus
3R 30011203..30011607 729..1133 99 <- Minus
3R 30011669..30012061 336..728 99 <- Minus
3R 30014815..30015149 1..335 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:49:01 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25836198..25836839 1134..1775 99 <- Minus
arm_3R 25836925..25837329 729..1133 99 <- Minus
arm_3R 25837391..25837783 336..728 99 <- Minus
arm_3R 25840537..25840871 1..335 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:32:17 Download gff for GM14349.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29752500..29752892 336..728 99 <- Minus
3R 29751307..29751948 1134..1775 99 <- Minus
3R 29752034..29752438 729..1133 99 <- Minus
3R 29755646..29755980 1..335 100   Minus

GM14349.hyp Sequence

Translation from 0 to 1587

> GM14349.hyp
RSGRNSAQQSLPSENPPLIASCISRTSRLTLCDVRAYNRVLSTHYYTTQS
TMSKQLARHVGQLNSLLKTAATASSVSAHNNYFTYVRELSHPIAREPPIV
KPEEAVACVKSGDTVFAGGAAATPVALLNAMAKHGKSNNLECVTVCHMHT
EGPGEYAKPEYKDHFRSNSFFMGANVRKAVADGRGDNVPIFLHEIPNLFY
KQIVKPDVSFIHVSPPDNHGYCSLGTSVDCVRAALLNSKLIVAQINPKMP
RTFGDAIIHKSHFDLAIEVTDDLPQHGTGKISEVEKKIGKLIAENLVKDG
ATLQMGIGSIPDAVLAALHNHKDLGIHSEMFANGVVELVRKGCVTNSKKK
MHQGRIVGSFLIGDKALYDFVDNNPFIEMYAIDYVNNTSIVKQQPRMTAI
NSCIEVDLTGQVCSDSIGPRFYSGFGGQVDFIRGAAEGLDGLGVPIIAMP
STTNKGESKIVPTLKEGAGVVTSRAHVHYVVTEHGIASLFGKNVRQRMYE
LIQIADPKHRETLEKQAFERIKVMPSPN*

GM14349.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-PC 477 CG7920-PC 1..477 52..528 2480 100 Plus
CG7920-PA 477 CG7920-PA 1..477 52..528 2480 100 Plus

GM14349.pep Sequence

Translation from 154 to 1587

> GM14349.pep
MSKQLARHVGQLNSLLKTAATASSVSAHNNYFTYVRELSHPIAREPPIVK
PEEAVACVKSGDTVFAGGAAATPVALLNAMAKHGKSNNLECVTVCHMHTE
GPGEYAKPEYKDHFRSNSFFMGANVRKAVADGRGDNVPIFLHEIPNLFYK
QIVKPDVSFIHVSPPDNHGYCSLGTSVDCVRAALLNSKLIVAQINPKMPR
TFGDAIIHKSHFDLAIEVTDDLPQHGTGKISEVEKKIGKLIAENLVKDGA
TLQMGIGSIPDAVLAALHNHKDLGIHSEMFANGVVELVRKGCVTNSKKKM
HQGRIVGSFLIGDKALYDFVDNNPFIEMYAIDYVNNTSIVKQQPRMTAIN
SCIEVDLTGQVCSDSIGPRFYSGFGGQVDFIRGAAEGLDGLGVPIIAMPS
TTNKGESKIVPTLKEGAGVVTSRAHVHYVVTEHGIASLFGKNVRQRMYEL
IQIADPKHRETLEKQAFERIKVMPSPN*

GM14349.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16210-PA 480 GF16210-PA 1..479 1..476 2268 89.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11976-PA 477 GG11976-PA 1..477 1..477 2500 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22150-PA 473 GH22150-PA 2..473 5..477 2145 83.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-PC 477 CG7920-PC 1..477 1..477 2480 100 Plus
CG7920-PA 477 CG7920-PA 1..477 1..477 2480 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21964-PA 477 GI21964-PA 1..476 1..476 2183 84.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13487-PA 476 GL13487-PA 1..476 1..477 2266 88.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20688-PA 476 GA20688-PA 1..476 1..477 2266 88.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12194-PA 454 GM12194-PA 1..454 1..477 2351 93.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17454-PA 477 GD17454-PA 1..477 1..477 2540 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14323-PA 477 GJ14323-PA 1..475 1..475 2194 85.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13373-PA 476 GK13373-PA 1..476 1..477 2249 87.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23426-PA 477 GE23426-PA 1..477 1..477 2500 97.7 Plus