Clone GM14354 Report

Search the DGRC for GM14354

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:143
Well:54
Vector:pOT2
Associated Gene/TranscriptRan-RA
Protein status:GM14354.pep: gold
Preliminary Size:1300
Sequenced Size:1109

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1404 2001-12-12 Blastp of sequenced clone
CG1404 2003-01-01 Sim4 clustering to Release 3
ran 2008-04-29 Release 5.5 accounting
ran 2008-08-15 Release 5.9 accounting
ran 2008-12-18 5.12 accounting

Clone Sequence Records

GM14354.complete Sequence

1109 bp (1109 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070533

> GM14354.complete
ACTGCATTGTGTTTCGGCAAAAAAGAAAGTTGTGGTTTTCTAGGAATTTC
GAGCAAAATCTCACCGTTCCAGAAATTTTGCATTAACGAAGATACCGAGT
GCTTAGAAGGATGGCTCAGGAAGGTCAGGATATACCCACATTCAAGTGCG
TGCTAGTCGGCGATGGCGGCACTGGCAAGACCACCTTTGTCAAGCGGCAC
ATGACCGGTGAGTTCGAGAAGAAGTACGTGGCCACACTGGGCGTGGAGGT
GCATCCATTGATCTTCCATACCAATCGTGGCGCCATCCGTTTCAATGTGT
GGGATACCGCTGGCCAGGAGAAGTTCGGCGGGCTGCGCGATGGCTACTAC
ATTCAGGGCCAGTGTGCCGTCATCATGTTCGATGTTACCTCGCGTGTCAC
GTACAAGAACGTGCCCAACTGGCATCGCGATCTAGTCCGCGTCTGCGAGA
ACATACCAATCGTCCTCTGTGGCAACAAAGTCGATATCAAGGATCGCAAG
GTGAAAGCGAAGAGCATCGTCTTCCACCGAAAGAAGAACTTGCAGTATTA
CGATATTTCTGCCAAATCGAACTACAACTTCGAGAAACCATTCCTTTGGC
TGGCGCGCAAGCTGGTTGGTGATCCCAACCTGGAGTTTGTCGCCATGCCA
GCCCTGCTGCCGCCCGAGGTTAAGATGGATAAGGATTGGCAGGCGCAGAT
CGAGCGTGACTTGCAGGAGGCCCAGGCGACCGCACTGCCCGACGAGGACG
AGGAGCTATAAGCCTATTTGTAGTTAACTTAGAGCGAAATCCGACTTGCG
CGAAAACACAAACACACACACACTCAAACACAAAACCACAACACACAACA
CCACACCGAACATAGAACACTGAATCACAGGCACCGTATGAAAAGGCGTG
GCAAGAGGGAATGAAGGATTACGGATTAGAGGAAGTAGCATTAGCAGTAG
TGTACTATCCGTACACTATTGGATTTGCCAGCCTATGTTCTTCGATCGAT
CGTTGGGAAAATCTACAAACAAGCCCTTCTTAATACGTCGATTGTATTTA
AATTTTAGATCCCCAATTCATTAATAAGTCGGTTATAATTGAAAAAAAAA
AAAAAAAAA

GM14354.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
ran-RB 1730 ran-RB 173..1264 1..1092 5445 99.9 Plus
ran-RA 1706 ran-RA 218..1250 60..1092 5150 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11036546..11037094 1091..543 2745 100 Minus
chrX 22417052 chrX 11037170..11037655 545..60 2430 100 Minus
chrX 22417052 chrX 11039722..11039780 59..1 295 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:23:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11145318..11145867 1092..543 2750 100 Minus
X 23542271 X 11145943..11146428 545..60 2415 99.8 Minus
X 23542271 X 11148486..11148544 59..1 295 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11153416..11153965 1092..543 2750 100 Minus
X 23527363 X 11154041..11154526 545..60 2415 99.7 Minus
X 23527363 X 11156584..11156642 59..1 295 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:27:24 has no hits.

GM14354.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:28:16 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11036546..11036780 857..1091 100 == Minus
chrX 11036832..11037091 546..805 100 <- Minus
chrX 11037170..11037655 60..545 100 <- Minus
chrX 11039722..11039780 1..59 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:08:44 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
ran-RA 1..651 111..761 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:56:26 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
ran-RA 1..651 111..761 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:36:20 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
Ran-RB 1..651 111..761 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:39:03 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
ran-RA 1..651 111..761 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:03:25 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
Ran-RA 1..651 111..761 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:10:11 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
ran-RB 46..1136 1..1091 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:56:26 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
ran-RB 46..1136 1..1091 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:20 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
Ran-RB 37..1127 1..1091 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:39:03 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
ran-RB 46..1136 1..1091 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:03:25 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
Ran-RB 37..1127 1..1091 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:28:16 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
X 11145319..11145864 546..1091 100 <- Minus
X 11145943..11146428 60..545 99 <- Minus
X 11148486..11148544 1..59 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:28:16 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
X 11145319..11145864 546..1091 100 <- Minus
X 11145943..11146428 60..545 99 <- Minus
X 11148486..11148544 1..59 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:28:16 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
X 11145319..11145864 546..1091 100 <- Minus
X 11145943..11146428 60..545 99 <- Minus
X 11148486..11148544 1..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:20 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11039352..11039897 546..1091 100 <- Minus
arm_X 11039976..11040461 60..545 99 <- Minus
arm_X 11042519..11042577 1..59 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:22:11 Download gff for GM14354.complete
Subject Subject Range Query Range Percent Splice Strand
X 11153417..11153962 546..1091 100 <- Minus
X 11154041..11154526 60..545 99 <- Minus
X 11156584..11156642 1..59 100   Minus

GM14354.hyp Sequence

Translation from 110 to 760

> GM14354.hyp
MAQEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPL
IFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKN
VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDIS
AKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERD
LQEAQATALPDEDEEL*

GM14354.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Ran-PD 216 CG1404-PD 1..216 1..216 1155 100 Plus
Ran-PC 216 CG1404-PC 1..216 1..216 1155 100 Plus
Ran-PA 216 CG1404-PA 1..216 1..216 1155 100 Plus
Ran-PB 216 CG1404-PB 1..216 1..216 1155 100 Plus
Ran-like-PA 217 CG7815-PA 11..210 11..210 675 61.5 Plus

GM14354.pep Sequence

Translation from 110 to 760

> GM14354.pep
MAQEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPL
IFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKN
VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDIS
AKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERD
LQEAQATALPDEDEEL*

GM14354.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20389-PA 216 GF20389-PA 1..216 1..216 1154 99.1 Plus
Dana\GF24088-PA 217 GF24088-PA 1..210 1..210 971 82.9 Plus
Dana\GF18246-PA 234 GF18246-PA 12..213 10..215 352 33.2 Plus
Dana\GF19340-PA 237 GF19340-PA 8..204 11..211 279 29.8 Plus
Dana\GF17263-PA 205 GF17263-PA 12..180 11..173 248 30.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18876-PA 216 GG18876-PA 1..216 1..216 1158 99.1 Plus
Dere\GG13551-PA 214 GG13551-PA 1..207 1..210 686 60.5 Plus
Dere\GG24517-PA 189 GG24517-PA 4..174 11..180 455 49.1 Plus
Dere\GG14295-PA 219 GG14295-PA 22..184 11..168 251 33.7 Plus
Dere\GG14761-PA 205 GG14761-PA 12..180 11..173 248 30.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24573-PA 216 GH24573-PA 1..216 1..216 1146 97.7 Plus
Dgri\GH16204-PA 213 GH16204-PA 2..213 5..216 1087 93.4 Plus
Dgri\GH18937-PA 205 GH18937-PA 12..180 11..173 253 30.8 Plus
Dgri\GH18481-PA 207 GH18481-PA 9..174 11..169 248 30.7 Plus
Dgri\GH12621-PA 204 GH12621-PA 1..171 1..169 247 29.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ran-PD 216 CG1404-PD 1..216 1..216 1155 100 Plus
Ran-PC 216 CG1404-PC 1..216 1..216 1155 100 Plus
Ran-PA 216 CG1404-PA 1..216 1..216 1155 100 Plus
Ran-PB 216 CG1404-PB 1..216 1..216 1155 100 Plus
Ran-like-PA 217 CG7815-PA 11..210 11..210 675 61.5 Plus
Rab26-PG 388 CG34410-PG 183..353 3..168 250 33.3 Plus
Rab26-PB 388 CG34410-PB 183..353 3..168 250 33.3 Plus
Rab19-PB 219 CG7062-PP3-RB 22..184 11..168 249 33.7 Plus
Rab19-PA 219 CG7062-PA 22..184 11..168 249 33.7 Plus
Rab7-PC 207 CG5915-PC 3..171 5..166 246 30.2 Plus
Rab7-PB 207 CG5915-PB 3..171 5..166 246 30.2 Plus
Rab7-PA 207 CG5915-PA 3..171 5..166 246 30.2 Plus
Rab35-PB 201 CG9575-PB 9..169 11..169 245 31.1 Plus
Rab35-PD 201 CG9575-PD 9..169 11..169 245 31.1 Plus
Rab35-PA 201 CG9575-PA 9..169 11..169 245 31.1 Plus
Rab10-PA 204 CG17060-PA 1..171 1..169 245 29.7 Plus
Rab1-PA 205 CG3320-PA 12..180 11..173 243 30.2 Plus
RabX4-PA 213 CG31118-PA 6..170 8..168 238 31.5 Plus
Rab30-PD 223 CG9100-PD 8..169 11..170 238 31.5 Plus
Rab30-PC 223 CG9100-PC 8..169 11..170 238 31.5 Plus
Rab30-PB 223 CG9100-PB 8..169 11..170 238 31.5 Plus
Rab30-PA 223 CG9100-PA 8..169 11..170 238 31.5 Plus
Rab23-PA 268 CG2108-PA 39..196 12..167 238 32.9 Plus
Rab11-PA 214 CG5771-PA 3..165 2..161 232 33.1 Plus
Rab11-PB 214 CG5771-PB 3..165 2..161 232 33.1 Plus
Rab26-PE 410 CG34410-PE 214..375 12..168 231 31.5 Plus
Rab26-PD 410 CG34410-PD 214..375 12..168 231 31.5 Plus
Rab26-PC 410 CG34410-PC 214..375 12..168 231 31.5 Plus
Rab6-PB 208 CG6601-PB 7..194 5..200 227 27.6 Plus
Rab6-PA 208 CG6601-PA 7..194 5..200 227 27.6 Plus
Rab8-PC 207 CG8287-PC 9..166 11..165 224 28.5 Plus
Rab8-PA 207 CG8287-PA 9..166 11..165 224 28.5 Plus
Rab5-PI 219 CG3664-PI 30..190 11..168 223 30.7 Plus
Rab5-PH 219 CG3664-PH 30..190 11..168 223 30.7 Plus
Rab5-PG 219 CG3664-PG 30..190 11..168 223 30.7 Plus
Rab5-PE 219 CG3664-PE 30..190 11..168 223 30.7 Plus
Rab5-PC 219 CG3664-PC 30..190 11..168 223 30.7 Plus
Rab5-PD 219 CG3664-PD 30..190 11..168 223 30.7 Plus
Rab5-PF 219 CG3664-PF 30..190 11..168 223 30.7 Plus
Rab5-PB 219 CG3664-PB 30..190 11..168 223 30.7 Plus
Rab5-PA 219 CG3664-PA 30..190 11..168 223 30.7 Plus
Rab3-PB 220 CG7576-PB 22..175 11..161 218 28.5 Plus
Rab3-PA 220 CG7576-PA 22..175 11..161 218 28.5 Plus
Rab4-PA 213 CG4921-PA 9..170 11..169 217 29 Plus
Rab4-PB 213 CG4921-PB 9..170 11..169 217 29 Plus
Rab21-PC 222 CG17515-PC 14..176 11..169 216 31.1 Plus
Rab21-PD 222 CG17515-PD 14..176 11..169 216 31.1 Plus
Rab9Fb-PA 214 CG32670-PA 8..178 11..173 214 28.7 Plus
Rab2-PB 213 CG3269-PB 7..167 11..168 213 29.8 Plus
Rab2-PA 213 CG3269-PA 7..167 11..168 213 29.8 Plus
Rab35-PC 190 CG9575-PC 9..158 22..169 211 30 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15278-PA 216 GI15278-PA 1..216 1..216 1151 98.6 Plus
Dmoj\GI24134-PA 218 GI24134-PA 1..206 1..204 806 70.5 Plus
Dmoj\GI11240-PA 203 GI11240-PA 4..185 7..195 363 38.1 Plus
Dmoj\GI17864-PA 232 GI17864-PA 12..215 10..214 360 35.4 Plus
Dmoj\GI14806-PA 201 GI14806-PA 9..169 11..169 255 32.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20255-PA 216 GL20255-PA 1..216 1..216 1152 98.6 Plus
Dper\GL26371-PA 218 GL26371-PA 5..192 10..202 458 49 Plus
Dper\GL14253-PA 195 GL14253-PA 3..192 6..210 372 40.3 Plus
Dper\GL25527-PA 182 GL25527-PA 1..177 6..186 366 42.5 Plus
Dper\GL14451-PA 259 GL14451-PA 7..197 8..192 354 41.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12719-PA 216 GA12719-PA 1..216 1..216 1152 98.6 Plus
Dpse\GA28834-PA 218 GA28834-PA 5..191 10..201 459 49.7 Plus
Dpse\GA25014-PA 191 GA25014-PA 1..188 8..210 368 41.2 Plus
Dpse\GA28024-PA 182 GA28024-PA 1..177 6..186 360 41.9 Plus
Dpse\GA25815-PA 196 GA25815-PA 1..196 1..216 348 36.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11261-PA 216 GM11261-PA 1..216 1..216 1164 100 Plus
Dsec\GM24492-PA 217 GM24492-PA 10..210 10..210 627 57.7 Plus
Dsec\GM18226-PA 191 GM18226-PA 4..170 11..186 447 50.6 Plus
Dsec\GM25038-PA 219 GM25038-PA 22..184 11..168 250 33.7 Plus
Dsec\GM15089-PA 205 GM15089-PA 12..180 11..173 248 30.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24539-PA 216 GD24539-PA 1..216 1..216 1164 100 Plus
Dsim\GD12564-PA 217 GD12564-PA 10..210 10..210 636 58.2 Plus
Dsim\GD22834-PA 191 GD22834-PA 4..189 11..192 452 47.4 Plus
Dsim\GD14074-PA 219 GD14074-PA 22..184 11..168 251 33.7 Plus
Dsim\GD19996-PA 205 GD19996-PA 12..180 11..173 248 30.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16931-PA 216 GJ16931-PA 1..216 1..216 1143 98.1 Plus
Dvir\GJ10958-PA 216 GJ10958-PA 6..216 5..216 854 73.1 Plus
Dvir\GJ17364-PA 234 GJ17364-PA 12..184 10..184 403 38.6 Plus
Dvir\GJ12325-PA 204 GJ12325-PA 4..184 7..194 394 41 Plus
Dvir\GJ14443-PA 205 GJ14443-PA 12..180 11..173 249 30.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17213-PA 216 GK17213-PA 1..216 1..216 1154 99.1 Plus
Dwil\GK24795-PA 190 GK24795-PA 4..190 7..216 780 70 Plus
Dwil\GK15426-PA 179 GK15426-PA 8..179 12..186 509 52 Plus
Dwil\GK17190-PA 219 GK17190-PA 22..184 11..168 258 35.6 Plus
Dwil\GK16335-PA 200 GK16335-PA 9..169 11..169 251 32.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\ran-PA 216 GE17316-PA 1..216 1..216 1160 99.5 Plus
Dyak\GE22850-PA 190 GE22850-PA 2..190 6..216 683 61 Plus
Dyak\GE15102-PA 190 GE15102-PA 4..189 11..200 445 45.5 Plus
Dyak\GE19852-PA 130 GE19852-PA 1..130 89..216 424 63.1 Plus
Dyak\GE20724-PA 219 GE20724-PA 22..184 11..168 251 33.7 Plus