Clone GM14547 Report

Search the DGRC for GM14547

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:145
Well:47
Vector:pOT2
Associated Gene/TranscriptCG30055-RA
Protein status:GM14547.pep: validated full length
Preliminary Size:1458
Sequenced Size:1318

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30055 2001-11-09 Blastp of sequenced clone
CG30055 2003-01-01 Sim4 clustering to Release 3
CG30055 2008-04-29 Release 5.5 accounting
CG30055 2008-08-15 Release 5.9 accounting
CG30055 2008-12-18 5.12 accounting

Clone Sequence Records

GM14547.complete Sequence

1318 bp (1318 high quality bases) assembled on 2001-11-09

GenBank Submission: AY070861

> GM14547.complete
AGCGCGTTGAAAACACATCAGTAGCTGACGGCAAAAATAGTTTATATACC
ATTCATTACCTATTAGCAAATAATCACAATCAGTGGTTATTTTTATTAGC
GGTGAGCGGTACCGCATGCAAATAGTCGCAAAATGGCGCTTAGAATTTGG
ATAAGAAACGAAATACGTGAGGCTTACGTAAGTGCGAGGACCAACAACAA
CGCTGGGAAGAGAGAAAACAAGTTGTTTAGAAAACAGGGTGTACCATTGT
CACCCAGCCATGTGGTGGAAACGATGATCAGAACATCTGGGTAAGACACC
CTGTTTGAGCCAAAGAGAGAGAGCGGGTGTGAGAGCAGCGCACCCACACA
AGCGCAACGAGTATACAGCAGATAGCGACGTCGGCAGAGCGTTTTAGCCG
ACCATTGCAGTACATATGTGAAATCGACGAAACCGAAAATCAGAAACCAA
ACGGACCACTAGCGAGCTACAACTCTGCCACGGCTACACTTTACACACTC
ATGTACTCCTCCACCACCTCACTCGCCAGCGCACTCACACACAGACGCGT
GCGTGCGGAGAGAGGAAGTAAAAATATGAAGACAAAAAAAAGCAAGTGCA
TCTCACCATGACAATGGCGGAACCATAAAAACACATGTTCCCATCTCGAA
TCGAACTGAATTCGGCGGCCAGCTCCTTCACAAAATAAAATAATACAGAC
AAAAAATCTGTATACGCGCAAAAGTTGAGCTGCTAAAACATGGAAACCTT
GCAGTTATCGATTCGTCTCGCTCATTGCGCAATGAAAAAAATGCAGCGGG
GGCGGAGGATACGAGAGAGCCTCTCTCTTTGTGAGACACCTGCAGCGATA
GGAAATGCAAATCCGCCTTCCACTTTCCAGCTCGAAAGTTCAAAGTTCAC
ATGCAACTAACTAGCTACTGGGTGCAGCGCATGTCCGAGGTGCACCAAAG
TCCCTGGACCAAACAAAAAAATGGCACAAACCAAACTCTCCGACTTCCAG
GCGCCGCAGGAAGATCTGTCATGGAATGCGGCACTAGGAAATATTAACTG
ACGCTGATCAAGTGATATCTGAAATGTGGTAAAGAGGTTCCTGTCACACG
GACCCATTTCTATAAAAAAAACTAATTAGTTTGATATTCGTACGTGTTCT
GCAAATTATCAGATGTTTTTAACTCTCTTGAGTCACATGATATTTAATGT
GATAAAAACTTTTTGTTATTTATTGTTTGTTTGTCCTAAAAAATTGACAA
CACAGTAAATGGAAAACTTTACTATAAAATAACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

GM14547.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG30055-RA 1573 CG30055-RA 171..1451 1..1281 6405 100 Plus
CG30055.a 2066 CG30055.a 727..2007 1..1281 6405 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8476600..8477612 1..1013 5065 100 Plus
chr2R 21145070 chr2R 8477710..8477979 1012..1281 1350 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:23:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12589327..12590339 1..1013 5065 100 Plus
2R 25286936 2R 12590437..12590706 1012..1281 1350 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12590526..12591538 1..1013 5065 100 Plus
2R 25260384 2R 12591636..12591905 1012..1281 1350 100 Plus
3L 28103327 3L 13530559..13530600 1317..1276 195 97.6 Minus
Blast to na_te.dros performed 2019-03-16 15:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 349..405 1231..1176 120 70.2 Minus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 6935..6991 1231..1176 120 70.2 Minus

GM14547.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:16:30 Download gff for GM14547.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8476600..8477612 1..1013 100 -> Plus
chr2R 8477712..8477979 1014..1283 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:08:58 Download gff for GM14547.complete
Subject Subject Range Query Range Percent Splice Strand
CG30055-RA 1..171 740..910 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:55:58 Download gff for GM14547.complete
Subject Subject Range Query Range Percent Splice Strand
CG30055-RA 1..171 740..910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:05:30 Download gff for GM14547.complete
Subject Subject Range Query Range Percent Splice Strand
CG30055-RA 25..1305 1..1283 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:55:58 Download gff for GM14547.complete
Subject Subject Range Query Range Percent Splice Strand
CG30055-RA 25..1305 1..1283 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:30 Download gff for GM14547.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12589327..12590339 1..1013 100 -> Plus
2R 12590439..12590706 1014..1283 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:30 Download gff for GM14547.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12589327..12590339 1..1013 100 -> Plus
2R 12590439..12590706 1014..1283 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:16:30 Download gff for GM14547.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12589327..12590339 1..1013 100 -> Plus
2R 12590439..12590706 1014..1283 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:42:09 Download gff for GM14547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8476832..8477844 1..1013 100 -> Plus
arm_2R 8477944..8478211 1014..1283 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:42:09 Download gff for GM14547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8476832..8477844 1..1013 100 -> Plus
arm_2R 8477944..8478211 1014..1283 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:42:09 Download gff for GM14547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8476832..8477844 1..1013 100 -> Plus
arm_2R 8477944..8478211 1014..1283 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:32:02 Download gff for GM14547.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12590526..12591538 1..1013 100 -> Plus
2R 12591638..12591905 1014..1283 99   Plus

GM14547.pep Sequence

Translation from 739 to 909

> GM14547.pep
METLQLSIRLAHCAMKKMQRGRRIRESLSLCETPAAIGNANPPSTFQLES
SKFTCN*

GM14547.pep Blast Records

Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12478-PA 56 GE12478-PA 1..56 1..56 256 89.3 Plus

GM14547.hyp Sequence

Translation from 739 to 909

> GM14547.hyp
METLQLSIRLAHCAMKKMQRGRRIRESLSLCETPAAIGNANPPSTFQLES
SKFTCN*
Sequence GM14547.hyp has no blast hits.