Clone GM14667 Report

Search the DGRC for GM14667

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:146
Well:67
Vector:pOT2
Associated Gene/TranscriptCG3800-RA
Protein status:GM14667.pep: gold
Preliminary Size:976
Sequenced Size:798

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3800 2002-01-03 Blastp of sequenced clone
CG3800 2008-04-29 Release 5.5 accounting
CG3800 2008-08-15 Release 5.9 accounting
CG3800 2008-12-18 5.12 accounting

Clone Sequence Records

GM14667.complete Sequence

798 bp (798 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075371

> GM14667.complete
GAAATCTGAGGAAGCCGGAGATCCTGTTGGTCTGTGTGATTTTTTCGCAT
CCAGCGCAAGCAGTGTGTAGTGCTCGAGGGCCCGTGGTTACCAGTGAGTG
TGTGAGGAAGTTGAGAAGTTGAGTTTAAGAAGCGGAGTCGGATTTGCGGA
TCAGTAGTCTAACCAAAACCGAAGCAAAGATGTCGATGTCTGCCACGTGC
TACAAGTGCAACCGGCCGGGCCACTTTGCCCGGGACTGCAGTCTCGGCGG
CGGCGGAGGTCCGGGCGGCGTTGGAGGAGGCGGTGGTGGCGGCGGCGGCG
GTATGCGCGGCAACGATGGCGGCGGCATGCGTCGCAACCGCGAGAAGTGC
TACAAATGCAACCAATTTGGGCACTTCGCACGTGCCTGCCCCGAGGAGGC
CGAGCGCTGCTACCGCTGCAACGGCATCGGGCACATCTCGAAGGACTGCA
CCCAGGCGGACAACCCGACCTGCTACCGTTGCAACAAGACCGGACACTGG
GTGCGCAACTGCCCAGAGGCCGTCAACGAACGTGGACCGACCAATGTGTC
GTGCTACAAGTGCAACCGCACCGGACACATCTCCAAGAACTGCCCGGAGA
CCTCGAAGACTTGCTACGGCTGCGGCAAGAGCGGACATCTGAGGCGCGAG
TGCGACGAGAAGGGCGGACGGAACTAGGCGCCACCACCCACCCGTGGCAC
CTCATAAATGTAATCATCGAAGGAGGAATATGAGTAATAATTCAACACAC
GAAGAACAACCAGAAGAAAAGATGAGAACGAAAAAAAAAAAAAAAAAA

GM14667.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3800-RA 2358 CG3800-RA 240..1037 1..798 3945 99.6 Plus
CG3800.a 2164 CG3800.a 240..1037 1..798 3945 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18822423..18823202 780..1 3900 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:24:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22935894..22936691 798..1 3945 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22937093..22937890 798..1 3945 99.6 Minus
Blast to na_te.dros performed 2019-03-16 17:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 1793..1858 699..762 109 65.2 Plus

GM14667.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:26:21 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18822959..18823202 1..244 100   Minus
chr2R 18822423..18822876 327..780 100 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:09:09 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 1..498 180..677 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:56:41 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RB 1..498 180..677 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:55:29 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 1..498 180..677 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:21:31 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 1..498 180..677 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:14 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 1..498 180..677 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:20:59 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 240..1019 1..780 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:56:41 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RB 33..812 1..780 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:55:29 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 387..1166 1..780 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:21:31 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 240..1019 1..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:14 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 387..1166 1..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:21 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22935912..22936691 1..780 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:21 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22935912..22936691 1..780 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:21 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22935912..22936691 1..780 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:55:29 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18823435..18824214 1..780 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:17 Download gff for GM14667.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22937129..22937908 1..780 99   Minus

GM14667.hyp Sequence

Translation from 179 to 676

> GM14667.hyp
MSMSATCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGM
RRNREKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYR
CNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGK
SGHLRRECDEKGGRN*

GM14667.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3800-PB 165 CG3800-PB 1..165 1..165 977 100 Plus
CG3800-PA 165 CG3800-PA 1..165 1..165 977 100 Plus
x16-PB 257 CG10203-PB 81..141 14..81 173 54.4 Plus
x16-PA 258 CG10203-PA 81..136 14..76 168 55.6 Plus

GM14667.pep Sequence

Translation from 179 to 676

> GM14667.pep
MSMSATCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGM
RRNREKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYR
CNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGK
SGHLRRECDEKGGRN*

GM14667.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
CNBP-PB 165 CG3800-PB 1..165 1..165 977 100 Plus
CNBP-PA 165 CG3800-PA 1..165 1..165 977 100 Plus
x16-PB 257 CG10203-PB 81..141 14..81 173 54.4 Plus
x16-PA 258 CG10203-PA 81..136 14..76 168 55.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17695-PA 159 GA17695-PA 1..159 1..165 772 93.9 Plus