Clone GM14838 Report

Search the DGRC for GM14838

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:148
Well:38
Vector:pOT2
Associated Gene/TranscriptCoprox-RA
Protein status:GM14838.pep: gold
Preliminary Size:1359
Sequenced Size:1370

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3433 2001-01-01 Release 2 assignment
CG3433 2002-12-11 Blastp of sequenced clone
CG3433 2003-01-01 Sim4 clustering to Release 3
Coprox 2008-04-29 Release 5.5 accounting
Coprox 2008-08-15 Release 5.9 accounting
Coprox 2008-12-18 5.12 accounting

Clone Sequence Records

GM14838.complete Sequence

1370 bp (1370 high quality bases) assembled on 2002-12-11

GenBank Submission: AF160897

> GM14838.complete
TTCGGCGAAAGTACTTAAGTTAAGTTACAAATTTGAAGTAGGCGAGAGCA
CATAATGAACGCACTCCGTCACACGATATCCCTGGTATCGCTGGGCACCT
TTCAACTGGTGCGCCGGACCAGGGGGCCGCACGCCAGAGGCTTTCTCCTC
GGCACGGGATTGGGCCTGGCCAGCTTTTCGGCGGTCACGTACGCACATTC
CGCGGAGGCTGTCGACCCAAAGGTCAACGGGGTGCAGATGAACACCTCGC
GGTTCATGGCCGAGCCCATCACCGACTCCAAGGCACTGCTGGGGGACAAG
GAGAACATGCGTCATCGCATGGAGATCCTGATCATGGAGATCCAGGCGGA
GTTTTGCCGCGCCCTGGAGGCGGAGGAGAACTGTGGCCAGAAGTTCAAGG
TGGACCGGTGGGAGCGGCCTGAGGGCGGAGGCGGCATCACTTGCGTCCTG
CAGGATGGCGATGTGTTCGAGAAGGCAGGCGTCAATATATCCGTGGTCAC
CGGTTCGTTGCCCCCGGCTGCAGTACAACAGATGCGGGCTCGCGGCAAGA
ATCTGAAGGAGGGCGCCTCGTTGCCGTTCTTTGCCAGCGGTGTGAGTGCC
GTGATCCATCCGAGGAATCCCCATGTCCCCACCATTCACTTCAACTATCG
TTATTTTGAAGTGGAAACTGCCAAGGGGGAGAAGCAGTGGTGGTTTGGTG
GCGGCACGGATCTGACGCCCTATTACCTCTGCGAGAAGGACGCCTCCCAC
TTCCACCAGACGCTGAAGTCCGCCTGCGATGAGCACGATCCCACCTACTA
CCCGCGCTTTAAGAAGTGGTGCGACGACTACTTCCGCATCAAGCATCGCA
ACGAGAGCCGCGGCATTGGCGGAATCTTTTTCGACGACATCGATTCGCCC
AACCAGGAGGCGGCCTTCAACTTTGTGTCAAGCTGCGCCAGGGCCGTGAT
TCCCTCCTACGTGCCGCTGGTACGAAAGCACAAAAATCGGGAGTATGGCA
ACAACGAACGACAGTGGCAATTGCTGCGCCGCGGGCGCTACGTGGAGTTC
AATTTGATCTACGATCGTGGCACCAAGTTCGGTCTATACACGCCTGGAGC
CCGGTACGAGAGCATCCTGATGTCCCTGCCCCTGCACGCCCGCTGGGAGT
ACATGCACGAGCCCAAGTCCCAGTCCGAGGAGGGCAAACTGATGAAGGTC
CTGAAGAACCCCAAGGATTGGGTCTAAGCTATTTTTAATTGTTCTTAAGA
GGGAACCGGTGCCTTTTGCATTATATTTAAAACTTAATGTGTACATATTG
TAATTGTTGTTGCAAATAAACATGACAAAATGTTATTGTTTCCTAACTAA
AAAAAAAAAAAAAAAAAAAA

GM14838.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Coprox-RA 1388 Coprox-RA 40..1388 1..1349 6730 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6963549..6964896 1..1348 6740 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:24:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6964465..6965813 1..1349 6730 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6964465..6965813 1..1349 6730 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 08:42:11 has no hits.

GM14838.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:43:21 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6963549..6964896 1..1348 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:09:19 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
Coprox-RA 1..1173 55..1227 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:00:01 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
Coprox-RA 1..1173 55..1227 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:48:27 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
Coprox-RA 1..1173 55..1227 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:35 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
Coprox-RA 1..1173 55..1227 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:46:47 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
Coprox-RA 1..1173 55..1227 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:17:08 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
Coprox-RA 40..1387 1..1348 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:00:01 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
Coprox-RA 40..1387 1..1348 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:48:27 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
Coprox-RA 45..1392 1..1348 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:35 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
Coprox-RA 40..1387 1..1348 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:46:47 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
Coprox-RA 45..1392 1..1348 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:21 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6964465..6965812 1..1348 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:21 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6964465..6965812 1..1348 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:21 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6964465..6965812 1..1348 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:48:27 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6964465..6965812 1..1348 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:21 Download gff for GM14838.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6964465..6965812 1..1348 99   Plus

GM14838.pep Sequence

Translation from 54 to 1226

> GM14838.pep
MNALRHTISLVSLGTFQLVRRTRGPHARGFLLGTGLGLASFSAVTYAHSA
EAVDPKVNGVQMNTSRFMAEPITDSKALLGDKENMRHRMEILIMEIQAEF
CRALEAEENCGQKFKVDRWERPEGGGGITCVLQDGDVFEKAGVNISVVTG
SLPPAAVQQMRARGKNLKEGASLPFFASGVSAVIHPRNPHVPTIHFNYRY
FEVETAKGEKQWWFGGGTDLTPYYLCEKDASHFHQTLKSACDEHDPTYYP
RFKKWCDDYFRIKHRNESRGIGGIFFDDIDSPNQEAAFNFVSSCARAVIP
SYVPLVRKHKNREYGNNERQWQLLRRGRYVEFNLIYDRGTKFGLYTPGAR
YESILMSLPLHARWEYMHEPKSQSEEGKLMKVLKNPKDWV*

GM14838.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15439-PA 390 GF15439-PA 1..390 1..390 1762 85.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10448-PA 390 GG10448-PA 1..390 1..390 2069 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13345-PA 386 GH13345-PA 1..386 1..390 1660 80.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
Coprox-PB 390 CG3433-PB 1..390 1..390 2099 100 Plus
Coprox-PA 390 CG3433-PA 1..390 1..390 2099 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17730-PA 386 GI17730-PA 1..386 1..390 1641 79 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26198-PA 206 GL26198-PA 123..206 307..390 444 95.2 Plus
Dper\GL26198-PA 206 GL26198-PA 1..115 1..115 253 47.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17449-PA 388 GA17449-PA 1..388 1..390 1761 84.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16261-PA 367 GM16261-PA 1..367 1..390 1920 92.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23442-PA 390 GD23442-PA 1..390 1..390 2106 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17558-PA 386 GJ17558-PA 1..386 1..390 1699 81.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18283-PA 393 GK18283-PA 1..393 1..390 1654 77.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14253-PA 390 GE14253-PA 1..390 1..390 2093 98.5 Plus

GM14838.hyp Sequence

Translation from 54 to 1226

> GM14838.hyp
MNALRHTISLVSLGTFQLVRRTRGPHARGFLLGTGLGLASFSAVTYAHSA
EAVDPKVNGVQMNTSRFMAEPITDSKALLGDKENMRHRMEILIMEIQAEF
CRALEAEENCGQKFKVDRWERPEGGGGITCVLQDGDVFEKAGVNISVVTG
SLPPAAVQQMRARGKNLKEGASLPFFASGVSAVIHPRNPHVPTIHFNYRY
FEVETAKGEKQWWFGGGTDLTPYYLCEKDASHFHQTLKSACDEHDPTYYP
RFKKWCDDYFRIKHRNESRGIGGIFFDDIDSPNQEAAFNFVSSCARAVIP
SYVPLVRKHKNREYGNNERQWQLLRRGRYVEFNLIYDRGTKFGLYTPGAR
YESILMSLPLHARWEYMHEPKSQSEEGKLMKVLKNPKDWV*

GM14838.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Coprox-PB 390 CG3433-PB 1..390 1..390 2099 100 Plus
Coprox-PA 390 CG3433-PA 1..390 1..390 2099 100 Plus