Clone GM16226 Report

Search the DGRC for GM16226

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:162
Well:26
Vector:pOT2
Associated Gene/TranscriptCG10343-RA
Protein status:GM16226.pep: gold
Preliminary Size:729
Sequenced Size:874

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10343 2002-01-01 Sim4 clustering to Release 2
CG10343 2002-06-04 Blastp of sequenced clone
CG10343 2003-01-01 Sim4 clustering to Release 3
CG10343 2008-04-29 Release 5.5 accounting
CG10343 2008-08-15 Release 5.9 accounting
CG10343 2008-12-18 5.12 accounting

Clone Sequence Records

GM16226.complete Sequence

874 bp (874 high quality bases) assembled on 2002-06-04

GenBank Submission: AY118478

> GM16226.complete
TGTTTTTGTTACAAATTTTGATTTTTGTCTTGTTTAACCAAAAATGATAA
AATCTTGAACAGTAAAGATAATCCACACAATTTACTATGAGCACGCCACT
GGAACAGCAGACGGAAGAACGGGAGGCGTTGCAGTCAATATACGAGGGCG
ACACGAACTTCAAGGAAATAGATAGCGTCACATTTCAGTACAAATATGGC
GAAGAGGATAACTACAAGTCGTTCTTGGTCGAGCTCAAGTGGGGCGAAAA
TTACCCCGATGAGGCGCCAGCGATCAACATGAACGCGTTTTACAATAGGA
ATCTACTGCCAGCTGTCAAGGAAGGGATCCAAACGGCTCTGAGTACGGAA
GCGGACCAATGGCTGGGCTGTGGCATGACCTATACCCTGTTCGAATGCCT
TAAGGACAACCTGGAGCAATTGACCGCAGAGCAACCCGAATCTGCACCCA
CGGTGGCGTTAGTGGATGATGGCGTGGGTGCTCTAAAGATCTCCGATCCC
AATGCCGATGCGGAGTCCAAGAAAAAGGAGCCCAAGAAGGAGCACCTGAC
TAAGGCGCAAAAGCGCCGGCAGTGGGAGAGAACCGATCACAAAGGAGACC
GGGAACGTGGCTGGGATTGGGTGGACCTCGTCAAGCATTTATCGCAGACG
GGTGGGAAAAACGATGATTCTCTCACTGCCGCCGAAATTGCAGCGTCCAA
CGCTCCAGCTCTCCACCCCCTGAACAACTAAAATGCCTACCAACTAAAAA
TAGGAGTAATAACATCGAGGAAACCTTAAATTGAAATCAAAAGCCAATAC
TATTTTATGTGATAGAATAAACGCGAGTAACTGCATGGGCGGCTATCATA
AAAAAAAAAAAAAAAAAAAAAAAA

GM16226.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10343.a 2346 CG10343.a 79..930 1..852 4245 99.8 Plus
CG10343-RA 955 CG10343-RA 79..930 1..852 4245 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18702655..18703199 305..849 2725 100 Plus
chr2L 23010047 chr2L 18702212..18702405 1..194 955 99.5 Plus
chr2L 23010047 chr2L 18702473..18702582 195..304 550 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:24:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18703910..18704457 305..852 2740 100 Plus
2L 23513712 2L 18703467..18703660 1..194 955 99.5 Plus
2L 23513712 2L 18703728..18703837 195..304 550 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18703910..18704457 305..852 2740 100 Plus
2L 23513712 2L 18703467..18703660 1..194 955 99.4 Plus
2L 23513712 2L 18703728..18703837 195..304 550 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:42:10 has no hits.

GM16226.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:42:53 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18702212..18702405 1..194 99 -> Plus
chr2L 18702473..18702582 195..304 100 -> Plus
chr2L 18702655..18703199 305..849 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:09:40 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10343-RA 1..645 87..731 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:33:11 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10343-RA 1..645 87..731 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:48:01 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10343-RA 1..645 87..731 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:24:40 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10343-RA 1..645 87..731 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:18 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10343-RA 1..645 87..731 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:03:59 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10343-RA 1..849 1..849 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:33:11 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10343-RA 1..849 1..849 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:01 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10343-RA 1..843 7..849 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:24:40 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10343-RA 1..849 1..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:18 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
CG10343-RA 1..843 7..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:42:53 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18703467..18703660 1..194 99 -> Plus
2L 18703728..18703837 195..304 100 -> Plus
2L 18703910..18704454 305..849 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:42:53 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18703467..18703660 1..194 99 -> Plus
2L 18703728..18703837 195..304 100 -> Plus
2L 18703910..18704454 305..849 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:42:53 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18703467..18703660 1..194 99 -> Plus
2L 18703728..18703837 195..304 100 -> Plus
2L 18703910..18704454 305..849 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:01 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18703467..18703660 1..194 99 -> Plus
arm_2L 18703728..18703837 195..304 100 -> Plus
arm_2L 18703910..18704454 305..849 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:57:13 Download gff for GM16226.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18703910..18704454 305..849 100   Plus
2L 18703467..18703660 1..194 99 -> Plus
2L 18703728..18703837 195..304 100 -> Plus

GM16226.hyp Sequence

Translation from 86 to 730

> GM16226.hyp
MSTPLEQQTEEREALQSIYEGDTNFKEIDSVTFQYKYGEEDNYKSFLVEL
KWGENYPDEAPAINMNAFYNRNLLPAVKEGIQTALSTEADQWLGCGMTYT
LFECLKDNLEQLTAEQPESAPTVALVDDGVGALKISDPNADAESKKKEPK
KEHLTKAQKRRQWERTDHKGDRERGWDWVDLVKHLSQTGGKNDDSLTAAE
IAASNAPALHPLNN*

GM16226.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10343-PA 214 CG10343-PA 1..214 1..214 1135 100 Plus

GM16226.pep Sequence

Translation from 86 to 730

> GM16226.pep
MSTPLEQQTEEREALQSIYEGDTNFKEIDSVTFQYKYGEEDNYKSFLVEL
KWGENYPDEAPAINMNAFYNRNLLPAVKEGIQTALSTEADQWLGCGMTYT
LFECLKDNLEQLTAEQPESAPTVALVDDGVGALKISDPNADAESKKKEPK
KEHLTKAQKRRQWERTDHKGDRERGWDWVDLVKHLSQTGGKNDDSLTAAE
IAASNAPALHPLNN*

GM16226.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15069-PA 210 GF15069-PA 1..210 1..214 929 83.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21128-PA 214 GG21128-PA 1..214 1..214 1030 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11608-PA 214 GH11608-PA 1..213 1..213 893 80.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10343-PA 214 CG10343-PA 1..214 1..214 1135 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17912-PA 214 GI17912-PA 1..213 1..213 891 79.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19632-PA 213 GL19632-PA 2..213 3..214 862 75.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10259-PA 213 GA10259-PA 2..213 3..214 862 75.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17289-PA 214 GM17289-PA 1..214 1..214 1142 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24152-PA 214 GD24152-PA 1..214 1..214 1137 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17683-PA 214 GJ17683-PA 1..213 1..213 904 81.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24690-PA 209 GK24690-PA 1..208 1..213 824 72.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13202-PA 214 GE13202-PA 1..214 1..214 1093 94.9 Plus