Clone GM16372 Report

Search the DGRC for GM16372

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:163
Well:72
Vector:pOT2
Associated Gene/TranscriptCG7339-RA
Protein status:GM16372.pep: gold
Preliminary Size:963
Sequenced Size:953

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7339 2002-01-01 Sim4 clustering to Release 2
CG7339 2002-06-04 Blastp of sequenced clone
CG7339 2003-01-01 Sim4 clustering to Release 3
CG7339 2008-04-29 Release 5.5 accounting
CG7339 2008-08-15 Release 5.9 accounting
CG7339 2008-12-18 5.12 accounting

Clone Sequence Records

GM16372.complete Sequence

953 bp (953 high quality bases) assembled on 2002-06-04

GenBank Submission: AY118479

> GM16372.complete
AAAACAATGAACGAGCATTAGTTTAAAAGAAGATATTTAAACAATTTGGC
GACATGTTCGTGCTGGCGGAGCTGAAGGACAATGTGAGGATTGCGCCGGA
CCAGTTCCATCTGAAGTTGGTGGACGCCGTGCGCGACGAGATCGACCGAA
AGCTGGCCAATAAGGTCCTTCTTAACGTGGGATTATGCATTGCGCTGAAG
GATATTGTTTCACTGAAGGATTCCATCATCCTGCCGGGAGACGGAGCCTC
GCACACGGAGGTTCTGTTCCGGTACGTGGTCTTCCGGCCGATGGTGGGCA
CCGTGATTACCGGAAAGATTCGAAACTGCAGCCGCGAAGGAGTCCATGTG
ACACTTGGTTTCTTCGACGACATCCTCATTCCGCATGCCGCCCTGCAGCA
TCCTTCGCGCTTCGATGAGGCCGAACAGGCCTGGGTTTGGGAATATCCGC
TCGAGGACGGCGCCAAACACGATCTCTTCATGGACGTTGGCGAGCCCATC
AAGTTCCGCGTATCACGGGAGATCTTCGAGGAAACATCACCCATTGGACC
ACCGAAAACTGAGGCTCAGACTCAGCAGGGAGCTAGCACATCCGCTGCAG
TCGCATCAGCTACCTCCCAAGAAGTGAAGACACCGTACAGGATTATTGGC
GCCATTAACGAATCCGGCCTAGGCGTGCTCTCCTGGTGGGATCAGCAGGG
AAAGGACGATGAGCAGGACGACGAGGAGGACGAGGAGTACGATGACGAAG
ATGGCGAAGGCGCATGCGAAGAATGATCCTGACGCCTACTCCTTTGTATA
GATGCCACTTACATTAGGGTTAGGAATTCGATTTAAGATGAAGTCATGAC
TATAAAGTTTGATTTAAGTCTGATTAGATCACAGCGTGTTTATGATTTCC
AGACCATACCATACCATAAAAACACAATTAAATTCAAAAAAAAAAAAAAA
AAA

GM16372.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-RA 1118 CG7339-RA 124..1059 1..936 4575 99.2 Plus
CG7339.a 1719 CG7339.a 124..1059 1..936 4575 99.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11639922..11640407 163..648 2430 100 Plus
chr3L 24539361 chr3L 11640469..11640749 651..935 1330 98.6 Plus
chr3L 24539361 chr3L 11639703..11639868 1..166 830 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:24:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11649007..11649492 163..648 2385 99.4 Plus
3L 28110227 3L 11649554..11649839 651..936 1385 99 Plus
3L 28110227 3L 11648788..11648953 1..166 830 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11642107..11642592 163..648 2385 99.3 Plus
3L 28103327 3L 11642654..11642939 651..936 1385 98.9 Plus
3L 28103327 3L 11641888..11642053 1..166 830 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:01:15 has no hits.

GM16372.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:02:27 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11639703..11639866 1..164 100 -> Plus
chr3L 11639924..11640406 165..647 100 -> Plus
chr3L 11640466..11640749 648..935 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:09:41 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 1..723 54..776 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:31:46 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 1..723 54..776 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:03:56 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 1..723 54..776 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:21:48 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 1..723 54..776 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:11:03 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 1..723 54..776 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:01:58 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 5..939 1..935 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:31:46 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 5..939 1..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:56 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 33..967 1..935 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:21:49 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 5..939 1..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:11:03 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 33..967 1..935 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:27 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11648788..11648951 1..164 100 -> Plus
3L 11649009..11649491 165..647 99 -> Plus
3L 11649551..11649838 648..935 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:27 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11648788..11648951 1..164 100 -> Plus
3L 11649009..11649491 165..647 99 -> Plus
3L 11649551..11649838 648..935 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:27 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11648788..11648951 1..164 100 -> Plus
3L 11649009..11649491 165..647 99 -> Plus
3L 11649551..11649838 648..935 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:56 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11641888..11642051 1..164 100 -> Plus
arm_3L 11642109..11642591 165..647 99 -> Plus
arm_3L 11642651..11642938 648..935 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:55:43 Download gff for GM16372.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11642651..11642938 648..935 98   Plus
3L 11642109..11642591 165..647 99 -> Plus
3L 11641888..11642051 1..164 100 -> Plus

GM16372.hyp Sequence

Translation from 53 to 775

> GM16372.hyp
MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKD
IVSLKDSIILPGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVT
LGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIK
FRVSREIFEETSPIGPPKTEAQTQQGASTSAAVASATSQEVKTPYRIIGA
INESGLGVLSWWDQQGKDDEQDDEEDEEYDDEDGEGACEE*

GM16372.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-PB 240 CG7339-PB 1..240 1..240 1252 100 Plus
CG7339-PA 240 CG7339-PA 1..240 1..240 1252 100 Plus

GM16372.pep Sequence

Translation from 53 to 775

> GM16372.pep
MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKD
IVSLKDSIILPGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVT
LGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIK
FRVSREIFEETSPIGPPKTEAQTQQGASTSAAVASATSQEVKTPYRIIGA
INESGLGVLSWWDQQGKDDEQDDEEDEEYDDEDGEGACEE*

GM16372.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25280-PA 244 GF25280-PA 1..244 1..240 1082 90.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15519-PA 240 GG15519-PA 1..240 1..240 1235 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14863-PA 246 GH14863-PA 1..246 1..240 1082 87.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-PB 240 CG7339-PB 1..240 1..240 1252 100 Plus
CG7339-PA 240 CG7339-PA 1..240 1..240 1252 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13714-PA 245 GI13714-PA 1..245 1..240 1046 85.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16275-PA 240 GL16275-PA 1..240 1..240 1081 86.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20275-PA 240 GA20275-PA 1..240 1..240 1087 86.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25288-PA 240 GM25288-PA 1..240 1..240 1254 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14319-PA 240 GD14319-PA 1..240 1..240 1254 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14059-PA 246 GJ14059-PA 1..246 1..240 1027 85.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12491-PA 245 GK12491-PA 1..245 1..240 1031 84.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21834-PA 240 GE21834-PA 1..240 1..240 1241 97.5 Plus