Clone GM17572 Report

Search the DGRC for GM17572

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:175
Well:72
Vector:pOT2
Associated Gene/TranscriptCG33714-RA
Protein status:GM17572.pep: gold
Sequenced Size:1310

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33071 2004-03-31 Blastp of sequenced clone
CG33713 2008-04-29 Release 5.5 accounting
CG33713 2008-08-15 Release 5.9 accounting
CG33714 2008-08-15 Release 5.9 accounting
CG33714 2008-12-18 5.12 accounting
CG33713 2008-12-18 5.12 accounting

Clone Sequence Records

GM17572.complete Sequence

1310 bp (1310 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012495.1

> GM17572.complete
CGGCACGAGCGGGAATCCAGATCGCCTTGGCTGGAAGAAGCAGAAAACCA
TATTTAATTCGAATTCACACCTCATTTAGCAAAACCGAGTCCATGGCCAC
CGCCGCAGCTGTAGCAAAAGTCGGAAAATCAGTGCACCGCATTTTCGTGG
GCAATCTACCGTGGACAGTGGGCCACCAGGAGTTGCGTGGCTACTTCCGC
GAGTTCGGACGCGTGGTGTCCGCCAACGTGATCTTCGACAAGCGAACGGG
GTGCTCGAAGGGCTACGGTTTCGTTAGCTTCAACAGTTTGACCGCGCTGG
AGAAGATCGAGAACGAGCAGAAGCACATACTGGAGGGCAACTACCTAAAC
ATACAGAAATCTTAGATTCCCCACTTTAATTGTCATTTAGTTTATAAGCT
CAGCAGATTTTTTTTTTTTTTGACATGTCGGACAGCGATACGGACACCGT
GGACGAGCTTTTCCACCTTGCCACCGAGCATGTGGCCAAGCAGTCAAACA
GCATTGGTTCCGCGGACCTTTTAATATTTTACGGATACTACAAGCAGGCC
ACGAATGGCCCCTGCAAGGAGCAAAGTCCGGGTCTGCTTCAACTGCAGGC
CAAGAGCAAGTGGCAGGCTTGGCGCAATCTGGGAACAATGTCCCAGTCCG
CTGCCCGGCAGGCCTACGTCCAGAAGCTGCAGGAGCTTCAACCCAACTGG
CGGTCCCGGCGCAACCCAGGCTGGGTCGTTCATTCCATTGAGTCGGTCCC
ACTGGAGGACCAACGTTTGGACAGTGAAAAGACCCTGTTTGACCACGTGA
AGGAGAACAATCTAGACAGGCTGAGGGAACTGCTGCAGCCAAGTGACTTG
GTTAAGCTGGACGAGCATGGCATGGCGCTCATCCACTGGGCTACCGATCG
CAATGCCGTCGAAATCATACAGTTCCTGGTGCGGAGTGGGGCCAGTGTAA
ATCAGCGAGATGCGGAGCAACAGACTCCGCTGCACTACGCCGCCAGTTGT
GGACACTTGGAGGCGCTCCAATGCCTGTTGGAGCTACACGCCAGCCTGGA
GCTACGCGATTCAGATGGACAGACTTGTTACGACGTGGCTGACGATGAGC
AGATCTGCCAGGTGCTTCAAACGGAACGGGAACGACTCGCTGGATCCGCG
TCCTAATGTCAAAATCTTAAGTTGTTCGGTGCTCATTTGCTTTAAAAACA
GCAAGGTGTTGTGAACCATTGTAAATCTCCGACAAGTCCCCTGTAAGTTC
TTTGGAACTATAATAAACATACATACATAAATGTAAAAAAAAAAAAAAAA
AAAAAAAAAA

GM17572.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG33714-RA 1280 CG33714-RA 4..1280 10..1286 6385 100 Plus
CG33713-RB 1280 CG33713-RB 4..1280 10..1286 6385 100 Plus
CG33714-RB 1257 CG33714-RB 50..1257 79..1286 6040 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21183093..21184367 1284..10 6375 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:25:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21317934..21319210 1286..10 6385 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21303026..21304302 1286..10 6385 100 Minus
Blast to na_te.dros performed 2019-03-16 11:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
BS 5142 BS BS 5142bp 1000..1055 434..380 115 69.6 Minus

GM17572.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:30:11 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21183093..21184370 6..1284 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:09:46 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 1..732 425..1156 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:38:43 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 1..732 425..1156 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:39:21 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RA 1..732 425..1156 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:22:28 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 1..732 425..1156 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:03 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RA 1..732 425..1156 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-27 15:32:48 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33714-RA 2..1278 9..1284 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:38:43 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33714-RA 2..1278 9..1284 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:39:21 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 2..1278 9..1284 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:22:29 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33714-RA 2..1278 9..1284 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:03 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 2..1278 9..1284 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:11 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
X 21317936..21319213 6..1284 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:11 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
X 21317936..21319213 6..1284 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:11 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
X 21317936..21319213 6..1284 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:39:21 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21188963..21190240 6..1284 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:54 Download gff for GM17572.complete
Subject Subject Range Query Range Percent Splice Strand
X 21303028..21304305 6..1284 99   Minus

GM17572.pep Sequence

Translation from 2 to 364

> GM17572.pep
ARAGIQIALAGRSRKPYLIRIHTSFSKTESMATAAAVAKVGKSVHRIFVG
NLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALE
KIENEQKHILEGNYLNIQKS*

GM17572.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21843-PA 90 GF21843-PA 1..90 31..120 465 95.6 Plus
Dana\GF18664-PA 89 GF18664-PA 7..85 42..120 213 46.8 Plus
Dana\GF18582-PA 357 GF18582-PA 113..192 41..120 162 35 Plus
Dana\GF17370-PA 343 GF17370-PA 58..132 46..120 149 34.7 Plus
Dana\GF17368-PA 385 GF17368-PA 111..190 41..120 147 32.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17545-PA 90 GG17545-PA 1..90 31..120 472 98.9 Plus
Dere\GG11399-PA 91 GG11399-PA 7..85 42..120 210 45.6 Plus
Dere\GG11603-PA 358 GG11603-PA 114..193 41..120 157 33.8 Plus
Dere\GG17033-PA 392 GG17033-PA 111..190 41..120 147 32.5 Plus
Dere\GG17035-PA 345 GG17035-PA 57..131 46..120 142 33.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12889-PA 88 GH12889-PA 1..88 31..120 428 90 Plus
Dgri\GH17588-PA 93 GH17588-PA 5..85 40..120 226 50.6 Plus
Dgri\GH17116-PA 379 GH17116-PA 114..193 41..120 154 33.8 Plus
Dgri\GH19058-PA 379 GH19058-PA 112..191 41..120 146 33.8 Plus
Dgri\GH19060-PA 349 GH19060-PA 43..134 30..120 145 32.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
SLIRP1-PB 90 CG33714-PB 1..90 31..120 466 100 Plus
SLIRP1-PA 90 CG33714-PA 1..90 31..120 466 100 Plus
SLIRP2-PA 91 CG8021-PA 7..85 42..120 213 45.6 Plus
Hrb98DE-PE 360 CG9983-PE 113..192 41..120 156 33.8 Plus
Hrb98DE-PF 361 CG9983-PF 114..193 41..120 156 33.8 Plus
Hrb98DE-PD 361 CG9983-PD 114..193 41..120 156 33.8 Plus
Hrb98DE-PA 364 CG9983-PA 117..196 41..120 156 33.8 Plus
Hrb98DE-PC 365 CG9983-PC 118..197 41..120 156 33.8 Plus
Hrb98DE-PB 365 CG9983-PB 118..197 41..120 156 33.8 Plus
Hrb87F-PE 385 CG12749-PE 111..190 41..120 149 33.8 Plus
Hrb87F-PD 385 CG12749-PD 111..190 41..120 149 33.8 Plus
Hrb87F-PC 385 CG12749-PC 111..190 41..120 149 33.8 Plus
Hrb87F-PA 385 CG12749-PA 111..190 41..120 149 33.8 Plus
sqd-PC 308 CG16901-PC 57..131 46..120 143 33.3 Plus
sqd-PE 308 CG16901-PE 57..131 46..120 143 33.3 Plus
sqd-PA 321 CG16901-PA 57..131 46..120 143 33.3 Plus
sqd-PB 344 CG16901-PB 57..131 46..120 143 33.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14443-PA 88 GI14443-PA 2..88 34..120 438 93.1 Plus
Dmoj\GI22529-PA 89 GI22529-PA 6..85 41..120 221 47.5 Plus
Dmoj\GI10577-PA 359 GI10577-PA 114..193 41..120 157 33.8 Plus
Dmoj\GI10692-PA 379 GI10692-PA 112..191 41..120 149 33.8 Plus
Dmoj\GI10695-PA 342 GI10695-PA 58..132 46..120 146 33.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16571-PA 88 GL16571-PA 2..88 34..120 437 93.1 Plus
Dper\GL23029-PA 89 GL23029-PA 6..85 41..120 214 46.2 Plus
Dper\GL13791-PA 431 GL13791-PA 113..192 41..120 160 35 Plus
Dper\GL23974-PA 341 GL23974-PA 44..130 34..120 150 32.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23106-PA 88 GA23106-PA 2..88 34..120 437 93.1 Plus
Dpse\GA20770-PA 89 GA20770-PA 6..85 41..120 212 46.2 Plus
Dpse\GA26796-PA 368 GA26796-PA 113..192 41..120 157 35 Plus
Dpse\GA14206-PD 193 GA14206-PD 45..130 35..120 150 32.6 Plus
Dpse\GA14206-PC 310 GA14206-PC 44..130 34..120 150 32.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22629-PA 90 GM22629-PA 1..90 31..120 477 100 Plus
Dsec\GM23745-PA 91 GM23745-PA 7..85 42..120 213 45.6 Plus
Dsec\GM16385-PA 363 GM16385-PA 116..195 41..120 161 33.8 Plus
Dsec\GM25918-PA 385 GM25918-PA 111..190 41..120 149 33.8 Plus
Dsec\GM25920-PA 345 GM25920-PA 57..131 46..120 145 34.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15500-PA 90 GD15500-PA 1..90 31..120 471 98.9 Plus
Dsim\GD18556-PA 91 GD18556-PA 7..85 42..120 213 45.6 Plus
Dsim\GD21374-PA 2951 GD21374-PA 2704..2783 41..120 157 33.8 Plus
Dsim\GD20486-PA 345 GD20486-PA 57..131 46..120 147 34.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18781-PA 88 GJ18781-PA 2..88 34..120 435 93.1 Plus
Dvir\GJ10132-PA 89 GJ10132-PA 6..85 41..120 224 50 Plus
Dvir\GJ22934-PA 355 GJ22934-PA 114..193 41..120 157 33.8 Plus
Dvir\GJ23113-PA 343 GJ23113-PA 42..132 30..120 155 33 Plus
Dvir\GJ23111-PA 382 GJ23111-PA 112..191 41..120 146 33.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16310-PA 88 GK16310-PA 2..88 34..120 438 93.1 Plus
Dwil\GK13213-PA 89 GK13213-PA 3..85 38..120 218 44.6 Plus
Dwil\GK12096-PA 385 GK12096-PA 117..196 41..120 157 35 Plus
Dwil\GK13337-PA 353 GK13337-PA 57..141 36..120 157 32.9 Plus
Dwil\GK13334-PA 402 GK13334-PA 112..191 41..120 148 32.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15305-PA 90 GE15305-PA 1..90 31..120 472 98.9 Plus
Dyak\GE25889-PA 91 GE25889-PA 7..85 42..120 215 46.8 Plus
Dyak\GE23791-PA 356 GE23791-PA 113..192 41..120 157 33.8 Plus
Dyak\GE24426-PA 391 GE24426-PA 111..190 41..120 147 32.5 Plus
Dyak\GE24428-PA 345 GE24428-PA 57..131 46..120 140 33.3 Plus

GM17572.hyp Sequence

Translation from 424 to 1155

> GM17572.hyp
MSDSDTDTVDELFHLATEHVAKQSNSIGSADLLIFYGYYKQATNGPCKEQ
SPGLLQLQAKSKWQAWRNLGTMSQSAARQAYVQKLQELQPNWRSRRNPGW
VVHSIESVPLEDQRLDSEKTLFDHVKENNLDRLRELLQPSDLVKLDEHGM
ALIHWATDRNAVEIIQFLVRSGASVNQRDAEQQTPLHYAASCGHLEALQC
LLELHASLELRDSDGQTCYDVADDEQICQVLQTERERLAGSAS*

GM17572.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG33713-PB 243 CG33713-PB 1..243 1..243 1267 100 Plus
CG33713-PA 243 CG33713-PA 1..243 1..243 1267 100 Plus
MYPT-75D-PB 635 CG6896-PB 118..237 116..234 180 33.3 Plus
MYPT-75D-PD 741 CG6896-PD 118..237 116..234 180 33.3 Plus
MYPT-75D-PC 741 CG6896-PC 118..237 116..234 180 33.3 Plus