Clone GM18426 Report

Search the DGRC for GM18426

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:184
Well:26
Vector:pOT2
Associated Gene/TranscriptCG32221-RB
Protein status:GM18426.pep: gold
Sequenced Size:1608

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32221 2008-04-29 Picked prior to 5.5
CG32221 2008-08-15 Release 5.9 accounting
CG32221 2008-12-18 5.12 accounting

Clone Sequence Records

GM18426.complete Sequence

1608 bp assembled on 2008-05-14

GenBank Submission: BT032689

> GM18426.complete
CCGACTTGGGATAAATTTTTCCATGTCAGGCGTACATAAACCAGTTGCCT
TTGCTAATCTGGCCATTTGGCGCCTGTGACGGTCCCGCGCAATGAGCATA
GTCAGCTAATAATGGCCCGCATCACCAGTATTCTGGACTTGGACCCCAGT
TCTCTGTTGTTCATCTTCAAGCTTCTAAGCTTGGAGGACCAGTTGCACTT
GGCGCGATGCTGTCGCATTTTTAGGGATGCCTTTCTTCGCCTGCATCGCC
ATGATTTCCAGGATGTTGTTGACAAGGATATGAGTATAAGGACTCTGGAG
GATTGGCGCACCTTTCTGTGGCTCTGTGGCAGTCGCATCGGTACACTGGA
ATCCCACTTTGACGATGATCACCCGCTGCAGCTGCTCCCGATGATCAGCA
GACACTGCTACCGACTGAAGTCCATCTCTATATACAATGCAACAGTGGCA
CGGGCGCAACCGTATTTATTGAGGATGAGCTCCCTGGAAAAGGTGCACGT
GCGTAACTACAAGAGCACCAGCAAGGATCTAATAAAAGCCATTGGGATAC
ACCTTCCGCGGGTCAACAGTCTGAGCCTGGAGAGCTTTGAACGCAAGGAG
TTACAAGAAGTACGTCAGTTTAGCGAGATGCTGGAACTTGGCTTGTACGA
CGACGTGACCGCCTCGGAATTCGCAACAATTGTGAAACCCATGAGGAAGC
TGCGATGCCTTCAGCTGCGCAACGCCAAACGCTTTCTGACTACCAGCAAT
CTCAGGATGCTGGCCACCAACTGCCGCCACCTGGAGAAGCTGACGTTCAA
TGACTGCGACGCCGATCTGTTGGTCCTGCCGCAGTTTGTAAACCTCAAGT
ACCTGCAATTATACTGCTCGGAGGATATGAAAACGCGCCTGTTCAAGGCA
CTGGCCAAAAGCCAGTGCTCCATTCAGTTGGAATACCTCATCCTGCACCG
CAAACGCTGGATTGACGAGGAGCAGGCGCAGTACATCAGTGCTTTGAAGT
GTCTCCGGTGGCTGGTCTGCAAGCCTCGTGACGATCTGTGTGTTCACCAC
TTGGCGAAGTTGAGTCGATTAGAGTGCCTTTCCATACAGTCCGCTCGTGA
GATTGGAGAAACGCAGCTCTCCCTTTTGGTGGCCAACAATGAGCGCCTTC
GGTATTTGAACATTTGCTATTGCCTGGGCATCACAGACGCCTTCGTCTTG
GACACGCTGGCCAGCTTATCGAAACGCTCAGCTCATCAAACCCTAGAGCT
ATTTGCCGCGGCCACTGACATTAGGCATGACATCATGGAACGGCTACCGC
ACGAATTTCCCCTGAAAATGCTCTGTTTGAACTTCGAGTGCAGCGATGGA
ATGACAAGCGGCGGACACTTTTATGCCGATGAGCCGGAATTCGATCGCCA
AGCCTTGTGAGGCCTTATTCGTTTAACAACGAATGTTTCTTCAATCATTA
CCAAAAATACAACGTAAATTATTTAATATTTATACGCAGCTTTATTCGTG
ATCTTACCACTTTGAGTGGTATTTCTTTTGTTAGTGCACAACGATGTAAC
TTTTTCACTGCATAATTAAAAAAATTACGTCATATTTAAAAAAAAAAAAA
AAAAAAAA

GM18426.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG32221-RB 1760 CG32221-RB 79..1667 1..1590 7895 99.8 Plus
trc.c 2389 trc.c 1..69 70..2 345 100 Minus
trc.f 2399 trc.f 1..69 70..2 345 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19824717..19825408 602..1293 3445 99.9 Plus
chr3L 24539361 chr3L 19824053..19824653 1..601 3005 100 Plus
chr3L 24539361 chr3L 19825483..19825776 1293..1587 1425 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:25:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19835354..19836045 602..1293 3445 99.9 Plus
3L 28110227 3L 19834690..19835290 1..601 3005 100 Plus
3L 28110227 3L 19836120..19836416 1293..1590 1440 99.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19828454..19829145 602..1293 3445 99.8 Plus
3L 28103327 3L 19827790..19828390 1..601 3005 100 Plus
3L 28103327 3L 19829220..19829516 1293..1590 1450 99.6 Plus
Blast to na_te.dros performed on 2019-03-15 16:31:39 has no hits.

GM18426.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:32:19 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19824053..19824653 1..601 100 -> Plus
chr3L 19824717..19825408 602..1293 99 -> Plus
chr3L 19825484..19825776 1294..1587 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:09:50 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
CG32221-RA 1..490 112..601 100 -> Plus
CG32221-RA 554..1362 602..1410 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:48:56 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
CG32221-RB 1..1299 112..1410 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:17:44 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
CG32221-RB 1..1299 112..1410 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:48:20 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
CG32221-RA 1..490 112..601 100 -> Plus
CG32221-RA 554..1362 602..1410 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:40:44 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
CG32221-RB 1..1299 112..1410 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:11:54 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
CG32221-RA 10..610 1..601 100 -> Plus
CG32221-RA 674..1658 602..1587 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:48:56 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
CG32221-RB 1..1586 1..1587 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:17:44 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
CG32221-RB 21..1606 1..1587 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:48:20 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
CG32221-RA 10..610 1..601 100 -> Plus
CG32221-RA 674..1658 602..1587 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:40:44 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
CG32221-RB 21..1606 1..1587 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:32:19 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19834690..19835290 1..601 100 -> Plus
3L 19835354..19836045 602..1293 99 -> Plus
3L 19836121..19836413 1294..1587 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:32:19 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19834690..19835290 1..601 100 -> Plus
3L 19835354..19836045 602..1293 99 -> Plus
3L 19836121..19836413 1294..1587 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:32:19 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19834690..19835290 1..601 100 -> Plus
3L 19835354..19836045 602..1293 99 -> Plus
3L 19836121..19836413 1294..1587 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:17:44 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19827790..19828390 1..601 100 -> Plus
arm_3L 19828454..19829145 602..1293 99 -> Plus
arm_3L 19829221..19829513 1294..1587 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:28:05 Download gff for GM18426.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19827790..19828390 1..601 100 -> Plus
3L 19828454..19829145 602..1293 99 -> Plus
3L 19829221..19829513 1294..1587 99   Plus

GM18426.pep Sequence

Translation from 111 to 1409

> GM18426.pep
MARITSILDLDPSSLLFIFKLLSLEDQLHLARCCRIFRDAFLRLHRHDFQ
DVVDKDMSIRTLEDWRTFLWLCGSRIGTLESHFDDDHPLQLLPMISRHCY
RLKSISIYNATVARAQPYLLRMSSLEKVHVRNYKSTSKDLIKAIGIHLPR
VNSLSLESFERKELQEVRQFSEMLELGLYDDVTASEFATIVKPMRKLRCL
QLRNAKRFLTTSNLRMLATNCRHLEKLTFNDCDADLLVLPQFVNLKYLQL
YCSEDMKTRLFKALAKSQCSIQLEYLILHRKRWIDEEQAQYISALKCLRW
LVCKPRDDLCVHHLAKLSRLECLSIQSAREIGETQLSLLVANNERLRYLN
ICYCLGITDAFVLDTLASLSKRSAHQTLELFAAATDIRHDIMERLPHEFP
LKMLCLNFECSDGMTSGGHFYADEPEFDRQAL*

GM18426.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23596-PA 432 GF23596-PA 1..432 1..432 1753 75.9 Plus
Dana\GF10851-PA 438 GF10851-PA 23..358 6..351 207 26.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16061-PA 432 GG16061-PA 1..432 1..432 2037 89.4 Plus
Dere\GG13374-PA 441 GG13374-PA 20..361 1..351 201 25.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14661-PA 429 GH14661-PA 1..429 1..429 1382 60 Plus
Dgri\GH22715-PA 647 GH22715-PA 135..512 4..366 174 22.2 Plus
Dgri\GH10849-PA 417 GH10849-PA 39..413 24..393 164 25.9 Plus
Dgri\GH23424-PA 417 GH23424-PA 39..413 24..393 156 25.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32221-PB 432 CG32221-PB 1..432 1..432 2245 100 Plus
CG14102-PA 441 CG14102-PA 27..361 8..351 213 25 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11645-PA 428 GI11645-PA 1..426 1..427 1374 61 Plus
Dmoj\GI13672-PA 403 GI13672-PA 22..350 5..351 171 26.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15739-PA 430 GL15739-PA 1..430 1..432 1702 73.4 Plus
Dper\GL15682-PA 448 GL15682-PA 28..355 6..339 200 28.5 Plus
Dper\GL19596-PA 424 GL19596-PA 21..421 5..408 155 24.4 Plus
Dper\GL26711-PA 422 GL26711-PA 20..309 7..301 154 26.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16763-PA 430 GA16763-PA 1..430 1..432 1690 72.9 Plus
Dpse\GA12759-PA 448 GA12759-PA 28..355 6..339 200 28.5 Plus
Dpse\GA29029-PA 422 GA29029-PA 20..309 7..301 158 26.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19659-PA 432 GM19659-PA 1..432 1..432 2172 95.6 Plus
Dsec\GM16391-PA 441 GM16391-PA 20..361 1..351 210 26 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14831-PA 432 GD14831-PA 1..432 1..432 2182 96.1 Plus
Dsim\GD12252-PA 441 GD12252-PA 20..361 1..351 209 25.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11326-PA 429 GJ11326-PA 1..429 1..429 1405 60.9 Plus
Dvir\GJ17426-PA 431 GJ17426-PA 32..426 16..408 154 26.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16972-PA 432 GK16972-PA 1..432 1..429 1396 61.4 Plus
Dwil\GK14907-PA 429 GK14907-PA 31..426 16..408 154 24.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19627-PA 432 GE19627-PA 1..432 1..432 2032 88.4 Plus
Dyak\GE23217-PA 432 GE23217-PA 1..432 1..432 2027 88.2 Plus
Dyak\GE14592-PA 441 GE14592-PA 25..361 6..351 215 26.5 Plus
Dyak\GE22468-PA 368 GE22468-PA 25..352 6..342 201 26.4 Plus

GM18426.hyp Sequence

Translation from 111 to 1409

> GM18426.hyp
MARITSILDLDPSSLLFIFKLLSLEDQLHLARCCRIFRDAFLRLHRHDFQ
DVVDKDMSIRTLEDWRTFLWLCGSRIGTLESHFDDDHPLQLLPMISRHCY
RLKSISIYNATVARAQPYLLRMSSLEKVHVRNYKSTSKDLIKAIGIHLPR
VNSLSLESFERKELQEVRQFSEMLELGLYDDVTASEFATIVKPMRKLRCL
QLRNAKRFLTTSNLRMLATNCRHLEKLTFNDCDADLLVLPQFVNLKYLQL
YCSEDMKTRLFKALAKSQCSIQLEYLILHRKRWIDEEQAQYISALKCLRW
LVCKPRDDLCVHHLAKLSRLECLSIQSAREIGETQLSLLVANNERLRYLN
ICYCLGITDAFVLDTLASLSKRSAHQTLELFAAATDIRHDIMERLPHEFP
LKMLCLNFECSDGMTSGGHFYADEPEFDRQAL*

GM18426.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32221-PB 432 CG32221-PB 1..432 1..432 2245 100 Plus
CG14102-PA 441 CG14102-PA 27..361 8..351 213 25 Plus