Clone GM18993 Report

Search the DGRC for GM18993

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:189
Well:93
Vector:pOT2
Associated Gene/TranscriptT48-RA
Protein status:GM18993.pep: gold
Preliminary Size:3284
Sequenced Size:2047

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5507 2002-01-01 Sim4 clustering to Release 2
CG5507 2002-05-18 Blastp of sequenced clone
CG5507 2003-01-01 Sim4 clustering to Release 3
T48 2008-04-29 Release 5.5 accounting
T48 2008-08-15 Release 5.9 accounting
T48 2008-12-18 5.12 accounting

Clone Sequence Records

GM18993.complete Sequence

2047 bp (2047 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118853

> GM18993.complete
GCAAGTGCGAGACGAGAGCAAACGTCGAGCGCAAATTGAATTTACGGTGC
CCCATCAAAGTCAAGTCGGCCGACTCCAACTAATTTAATGATCAAAAGTA
ACACATTTTTTTCGCATTCGGCGGCAGCCGCTGAGCGGTGTTAATTGAAA
GTGTCACGCTTCGTCACAATAATAAATATAATTCCCATCGACTACTGGCT
TTCGTCTATGTGAAGTGAGTGCCCGAGTGAAATGCGGTCGGTGGAAGTGG
CCCAAAGCGGCCCATCTGCCATCTTCTGGCTCGTCCAAGTGCTAATCGTG
GGGGCGGCACAGGCTGCCACGCCCTTCGCGAAAGAGTACCGCAACGCGGG
ACTCTACAATGGCAACACACTCGTCGATCTGGACGGTTCCACCACCCTGG
ACATGGGCCAGGAGAAGCCCACCAGCAGCAGCAGCGGTCTCAGTGGAGGC
TTCAAGTCGGAGTCGTCGGTGGTGCTGCCCGGCATGCTGCAAAATTCAGG
CTGCCCGCTGACGACGAGTTCCCACTGCCTGCGCTGCAACAAGGTGGGCT
GCATCAAGTGCCCAATGTACCTGGTGACGGACACGAGGCAGTGCGTGGAT
CAGTGCCCCGCCGGCTACTTGGACCAGTGGTCCGCCCACACGGAGTTCAT
GGGTCGGGTGTGTGTACCCACCGGCTATTCTGGGCCACTGATGGCCGCAC
TGGCCGGACTTCTCGGTGGCTTCCTCGTTTGCCTGTCCCTTCTGGCTGTC
GCCGTGATGCTGGTCAAGAGGAAGAGGCGGCGAAAGTCCATCAAACAGAA
GCTCATCAACGAGAACACCATGGATCGGGCGGACTTCATGAGGCAGCTAA
ACGAGATGCGTCCGAATGCGGAGTACTTTCTGGCCATGCTGAACGATACC
CGGCGGCAGATCAGGAAGCTCTATTTGTCGGGTGAAGTGGCGGCTGCCAA
CTCGTACAGGCCCATCGTCCGGGATCTGGCAAAGCTGCTGATTCTGCTAA
ACAGGCCCATTGAACTGATTCCCGCCCCGCCGCCAGATTGGTCCAGGCTG
TATGCCTGGTCGGAGCAGGCCCTGGAGCGTTACAAGCCGCAGGTGGGCCA
GCTTATCGACTTCTTTCAGGCCTCACACGGTCACAGTGCTGGCCACCACG
AGGTGCTCTACGCTGCGCCGAACAAGAAGAAGCAACTGCAGCAGCCCAGC
ATCTTCCGGCAACAGGTGACGCCCACGGCGACGCCGCAGGGAGTGGGCGA
ACTGATGGCCGGCGATCGGAGCAGCAGTGCCTCGGCGCAGCAGAAGCTAC
ACCTGTTTGGCTCGCTGATCAGCCTGCACGAGTTCGAGGAGCCGCGGGCT
TCGGATCCTTTCGGCAGCAGTTTCAACACGCTGAAGAGCGGCAATCTCAT
CTCTGATCTCAACGCCAGCTCGCTGTGGCTGGAGGACGAGTTCTACAAGC
TGGGCTTTCGACCGCAGGACGAGATCACCACGGAGCTGTAACCGCATCAC
AAAACTCATACTCAAAACTTAATGCAAACTAAGTATTACCCCGGCTGGCG
GCGCTAGCCGTTCGAGTCTAGCGCCAGTTCAGCTGGGGGAATGGAGCATT
TGCGTGCACATTCCGACAGGCCATCATCGACTTCGACTTCATCGACAAGC
TAACTGGGAGGCCGTTTAGCCGGAGCCGCTAAATGCCCACGCTTAGAGCT
TAGTTAGATCAGTTAAGCAAGCAAACTAGTCACGTAAAATCACAAACAAA
ACCATCAACACACAACGATGCCGAGGAGAAGGAGCTAATGCAAATGCAAA
TGGAAATCGCGTGGAAATGAATTTAGTTTTATGGATTTTACAAAAATCGC
AACAATCATGTAACGAACAATATTCAATATACACACTATAGAAATACTAT
TCAGATAATAACTAAGATGATTAGCAGTATAAACGCGATACTTATAGCTA
TAGCTTATGTAGACAGAGATTATAAACCTTAGCGAATACGAAATGGATAA
TAAAATCGTGTGCCTTAGGATTGTAAAAAAAAAAAAAAAAAAAAAAA

GM18993.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
T48-RA 2493 T48-RA 471..2106 2..1637 8165 99.9 Plus
T48.a 2201 T48.a 188..1823 2..1637 8165 99.9 Plus
T48-RA 2493 T48-RA 2102..2488 1642..2028 1935 100 Plus
T48.a 2201 T48.a 1819..2201 1642..2024 1915 100 Plus
Ets97D-RA 1925 Ets97D-RA 1705..1925 2028..1808 1105 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22732560..22734087 497..2024 7625 99.9 Plus
chr3R 27901430 chr3R 22706854..22707352 2..500 2495 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:25:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26909473..26910995 497..2028 7475 99.3 Plus
3R 32079331 3R 26883726..26884224 2..500 2495 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26650304..26651444 497..1637 5690 99.9 Plus
3R 31820162 3R 26624557..26625055 2..500 2495 100 Plus
3R 31820162 3R 26651440..26651826 1642..2028 1935 100 Plus
Blast to na_te.dros performed 2019-03-15 15:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 7752..7804 759..812 114 70.4 Plus

GM18993.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:32:11 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22706853..22707351 1..499 99 -> Plus
chr3R 22732563..22734087 500..2024 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:31:23 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
T48-RA 1..1260 232..1491 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:45:18 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
T48-RA 1..1260 232..1491 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:31:41 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
T48-RA 1..1260 232..1491 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:37:32 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
T48-RA 1..1260 232..1491 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:09:00 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
T48-RA 1..1260 232..1491 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:31:22 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
T48-RA 429..2443 1..2024 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:45:18 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
T48-RA 429..2443 1..2024 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:41 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
T48-RA 429..2443 1..2024 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:37:32 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
T48-RA 429..2443 1..2024 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:09:00 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
T48-RA 429..2443 1..2024 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:32:11 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26883725..26884223 1..499 99 -> Plus
3R 26909476..26910991 500..2024 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:32:11 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26883725..26884223 1..499 99 -> Plus
3R 26909476..26910991 500..2024 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:32:11 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26883725..26884223 1..499 99 -> Plus
3R 26909476..26910991 500..2024 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:41 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22709447..22709945 1..499 99 -> Plus
arm_3R 22735198..22736713 500..2024 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:09:54 Download gff for GM18993.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26624556..26625054 1..499 99 -> Plus
3R 26650307..26651822 500..2024 99   Plus

GM18993.pep Sequence

Translation from 231 to 1490

> GM18993.pep
MRSVEVAQSGPSAIFWLVQVLIVGAAQAATPFAKEYRNAGLYNGNTLVDL
DGSTTLDMGQEKPTSSSSGLSGGFKSESSVVLPGMLQNSGCPLTTSSHCL
RCNKVGCIKCPMYLVTDTRQCVDQCPAGYLDQWSAHTEFMGRVCVPTGYS
GPLMAALAGLLGGFLVCLSLLAVAVMLVKRKRRRKSIKQKLINENTMDRA
DFMRQLNEMRPNAEYFLAMLNDTRRQIRKLYLSGEVAAANSYRPIVRDLA
KLLILLNRPIELIPAPPPDWSRLYAWSEQALERYKPQVGQLIDFFQASHG
HSAGHHEVLYAAPNKKKQLQQPSIFRQQVTPTATPQGVGELMAGDRSSSA
SAQQKLHLFGSLISLHEFEEPRASDPFGSSFNTLKSGNLISDLNASSLWL
EDEFYKLGFRPQDEITTEL*

GM18993.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16462-PA 408 GF16462-PA 4..408 10..419 1895 88.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11509-PA 418 GG11509-PA 1..418 1..419 2184 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14059-PA 427 GH14059-PA 14..427 21..419 1629 79.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
T48-PB 419 CG5507-PB 1..419 1..419 2173 100 Plus
T48-PA 419 CG5507-PA 1..419 1..419 2173 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24435-PA 429 GI24435-PA 22..429 30..419 1641 80 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27229-PA 410 GL27229-PA 4..410 14..419 1836 87.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18936-PA 410 GA18936-PA 4..410 14..419 1841 87.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10351-PA 419 GM10351-PA 1..419 1..419 2230 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21313-PA 417 GD21313-PA 1..417 1..419 2206 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10709-PA 417 GJ10709-PA 4..417 17..419 1713 82.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22606-PA 412 GK22606-PA 4..412 15..419 1698 81.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23699-PA 419 GE23699-PA 1..419 1..419 2169 96.9 Plus

GM18993.hyp Sequence

Translation from 231 to 1490

> GM18993.hyp
MRSVEVAQSGPSAIFWLVQVLIVGAAQAATPFAKEYRNAGLYNGNTLVDL
DGSTTLDMGQEKPTSSSSGLSGGFKSESSVVLPGMLQNSGCPLTTSSHCL
RCNKVGCIKCPMYLVTDTRQCVDQCPAGYLDQWSAHTEFMGRVCVPTGYS
GPLMAALAGLLGGFLVCLSLLAVAVMLVKRKRRRKSIKQKLINENTMDRA
DFMRQLNEMRPNAEYFLAMLNDTRRQIRKLYLSGEVAAANSYRPIVRDLA
KLLILLNRPIELIPAPPPDWSRLYAWSEQALERYKPQVGQLIDFFQASHG
HSAGHHEVLYAAPNKKKQLQQPSIFRQQVTPTATPQGVGELMAGDRSSSA
SAQQKLHLFGSLISLHEFEEPRASDPFGSSFNTLKSGNLISDLNASSLWL
EDEFYKLGFRPQDEITTEL*

GM18993.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
T48-PB 419 CG5507-PB 1..419 1..419 2173 100 Plus
T48-PA 419 CG5507-PA 1..419 1..419 2173 100 Plus