Clone GM19713 Report

Search the DGRC for GM19713

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:197
Well:13
Vector:pOT2
Associated Gene/Transcriptklar-RC
Protein status:GM19713.pep: gold
Sequenced Size:3034

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
klar 2009-10-21 Manual selection by Sue Celniker

Clone Sequence Records

GM19713.complete Sequence

3034 bp assembled on 2010-02-26

GenBank Submission: BT120378.1

> GM19713.complete
CGCGTTCCAAGCGGTTGTTCTCTGTTTCGCTGTCTGTAATTATATTTTAA
CGTGCTTCCGCGAAATTGTGTGAAGTAATCCCACTAGAATCCCGCATAAT
TCCGCCAAAACAACTGTGATAAAACAAAACTATGCCCTCTAAAGTAACTT
AGGCCAGTAAAATCCAACTTAGAAGTGTCCATTCATAAAGTTCCCAAATC
GCGTGCTTTTTTTGCCCTGCGTATAAGAGTTCCTGTTTGTTATAAGAGTT
TCGCGTAAATTTCGATAGTTTTCAATGCCGAATTGTTCAAGTTACAGTGT
ATATAGTGCATATACTTCCATAATCCCTGCAAGTGTGTGCTTCGGAAAAC
GAAATTGAAATGGTTTAAAACACAAATTGATTACAAAAATTGATTTCAAG
TGGCACATCGAGCGAAAGTGGGTCACTCAGGGGTTGAAGAGAGCTTTTCC
CGCCGAGGTCTGCCAGGGGAAAACTCCAAAACCCAGACCACAATGGGGAA
AGTCAGCGTGGCCGTCCAGACGGATATATCCGAAATGCTTTCGGCCACTT
CTTCCACCAACACATCACGCTCGTCATCGGAGCAAGATCTGCTCGGCGCC
TGGGAGGATCTACTTAGCTGGAGCGAGAATGCCTCCGCTGCCCGCAAATT
GCAGCAGGAGATGAGTGTGTTGAAGAGCTCGCTGCAGCGCCTGGGAGACA
AGCCAACTCCAGAGCTCCTCGATACGGAGCCGGCCATCCAAATAGCAGTG
GAGGCGCTCAAGTTGGAGCAGACGCAACTGACCAGCTATAGGACCAACAT
GCTGCGTCTTAACGCCTCCGTCCACAGTTGGCTTACCAAGCAGGAGCGGC
GACTGCAGAGCGCCTTGGAGGAACAGGAGCAGCAACAGGAGTCCGAACAA
CTCAAGCAGCAAAAACTTGTTGAAGAGGAGAAGGGAGCTGACGTTCAGAA
GGAGCTGGCGTCTACCGGAGCAGTGGCCATCACGGTCACCGACAGCAATG
GTAATCAGGTGGAGGCACTAGCCACAGGAGAAGCCTCCACCTCCACGCCA
GCCTGGGATGTGCACACGCTGATGTCATCGGAGCAGGAGTTCCATAAGCA
TCTGAAGAACGAAGTGAGCGACATGTACAGTTCCTGGGATGAGGCGGATG
CCAGAATCAACACGCAACTGGAAATGCTTACCAACTCGCTTATTGCCTGG
AGGCAGTTGGAGTCCGGTTTGAGTGAGTTCCAATTGGCTTTGGGCCAAGA
TAGGGGCACTCTGAAGGGTCTTGAAGGAGCTCTGGACAAGGGACAAGCCA
CACCAGTCGAGCTGGCCCAGAATGTAAAACTGGTGGCCAAGCTGCTGTCC
GAAAAGGTTCACGTAAGCCAGGAGCAACTTTTGGCCGTCCAGCAGCACCT
GGACCCCAACCACATCTACCACATTACGAAGTTTACAGCCTCAAATGGCT
CGCTATCAGATTCCGGCATCTCTGATGGAGGAGCTACTTCTGATGGTGGC
CTGTCCGAGAGGGAGCGACGACTGGGAGTTCTTCGACGCCTAGCAAAGCA
GTTGGAACTAGCTCTGGCGCCGGGAAGCGAAGCCATGCGTTCTATTGCTG
CCCGAATGGAAAGTGCCGAGGCCGACCTGAAGCACCTGCAGAACACCTGT
AGAGACTTAATTGTTCGCACTGCAGCTAGCCACCAGCAGAAGCAGCAGAT
CCAGCAAAATCAGACCCAGCAGGTGTCACCGAAGGCCAATGGACACATTA
AGAAGCAGGCCGCAAAGGGCAAGGCAGAACCCCAGTCGCCTGGCAGACGT
GGTAAAGGAGCTCGAAAGGCGCGTCAGGCCAAGAAGGCTGGAGAGGATCA
GCAAGTAGAGGAGCCAAGTCTCAGCCCAGAACAGCAGAAGATGGTCCTGA
AGCAACTCAAGACCTTGACAAGTGGCGATGGTGGGGACGACCCCTCTGAC
GATCCCTCGTTGCTCTTCAACCTGGAAAGCTCCGAGGAAGATGGAGAGGG
AGCGGATCCTGCACAGACCTCTAAGCGAGGGTGGGCGTGGCGCATCGCGA
GGGCGGCAGTGCCTATGCAGGTGGCCCTGTTCACAATCTTCTGCGCTGCC
TGCCTGATGCAACCCAACTGCTGCGACAATCTGAACAACCTGTCCATGAG
CTTCACGCCGCAGCTCCGCTATATCCGTGGACCACCTCCGATCTGAGGAC
AGAGCGCGACTAATTAAGCAGGCCGCTAATCGTTGTAGGTTACCGTTACG
TTATGTTAAGGCATTTAACAGCTGTAACTAGAGTTAACCAGCGCAACCAG
CCACTTAGGCAGAGCCACTAAGAGCTCGCCTGTGGCGCGCGTTTTCCGCG
CTCGAGGTTTTACAATCCCGAACAGAGCGCTCTCCTCCGAAAGGTGCGAC
ACCCAGAGGCAGCCCAATTTTATATGTCTAATTTAGGTAGCGAGCGCGAA
AGGAACGCAATTTATAGTAAGGATGTATTTGTTATTTCGGTTAATTTCCT
ACGAGTTTAGGTTGCTGTTCGATTGAACGCTGAATATGTACTTAGGCGAG
GAGCAGACGATGCCCAGCCACGTGTAAACTGCCGCATAAAGGAACAAAGG
GGCGGATCGTCCCCCAGATTCTTACCCAGTAAATATGATACAAGCACAAT
GATCAATTGAGTGGCGTTTTTGTATACTTTTTTGTTTGAAAAACACTAAA
GTGCCTACAAATGCGAACTGTGAACGAGGAGCTACCAGCAGATGACAAAG
GATCCGTCGAGGAGTCCAAACGAGAGTATGAATCCAAGGCACCGAAGCAA
ACAGAAGCTAAAAAGCCAACAGCACTAAGGAGCTAGCAATGGAGCTCACC
AGAACAGCGATGAAGAATCAGAGTTTATATTTTTATACGCAACGCAACTA
TACACAATCAGTGCGGAGACAACGAATCTTCAGCCAACACACATCATACG
TTTTATGTCTATTATATTAATAGGATAAACCTTACACTTATTTTGCAAGA
AAACAAAAATTCAACAAAAAAAAAAAAAAAAAAA

GM19713.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
klar-RC 3248 klar-RC 16..3044 1..3029 15070 99.8 Plus
klar-RB 7862 klar-RB 5224..7669 584..3029 12215 99.9 Plus
klar.c 8286 klar.c 5648..8093 584..3029 12215 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 434212..436077 3015..1152 9250 99.8 Minus
chr3L 24539361 chr3L 440413..440998 586..1 2870 99.3 Minus
chr3L 24539361 chr3L 436137..436530 1154..761 1895 98.7 Minus
chr3L 24539361 chr3L 436589..436766 762..585 890 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 17:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
snmRNA:438-RA 64 CR33660-RA 1..64 2396..2459 320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 434285..436162 3029..1152 9375 99.9 Minus
3L 28110227 3L 440494..441079 586..1 2870 99.3 Minus
3L 28110227 3L 436222..436615 1154..761 1970 100 Minus
3L 28110227 3L 436674..436851 762..585 890 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 434285..436162 3029..1152 9375 99.9 Minus
3L 28103327 3L 440494..441079 586..1 2870 99.3 Minus
3L 28103327 3L 436222..436615 1154..761 1970 100 Minus
3L 28103327 3L 436674..436851 762..585 890 100 Minus
Blast to na_te.dros performed 2019-03-16 18:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1089..1151 839..901 134 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6876 839..997 132 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2317..2397 835..916 128 63.4 Plus
roo 9092 roo DM_ROO 9092bp 1053..1101 1672..1721 121 74 Plus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 692..731 2976..3015 119 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6842 839..916 118 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2823 872..916 117 73.3 Plus

GM19713.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:47:38 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 434212..436074 1155..3015 99 <- Minus
chr3L 436137..436528 763..1154 98 <- Minus
chr3L 436589..436764 587..762 100 <- Minus
chr3L 440413..440998 1..586 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-26 12:57:52 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
klar-RC 1..1704 493..2196 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:54:46 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
klar-RC 1..1704 493..2196 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:50:58 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
klar-RC 1..1704 493..2196 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:15 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
klar-RC 1..1704 493..2196 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 17:25:11 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
snmRNA:438-RA 1..64 2396..2459 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-26 12:57:50 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
klar-RC 1..3015 1..3015 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:54:46 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
klar-RC 1..3015 1..3015 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:58 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
klar-RC 18..3032 1..3015 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:15 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
klar-RC 18..3032 1..3015 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:38 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
3L 434299..436159 1155..3015 99 <- Minus
3L 436222..436613 763..1154 100 <- Minus
3L 436674..436849 587..762 100 <- Minus
3L 440494..441079 1..586 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:38 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
3L 434299..436159 1155..3015 99 <- Minus
3L 436222..436613 763..1154 100 <- Minus
3L 436674..436849 587..762 100 <- Minus
3L 440494..441079 1..586 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:38 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
3L 434299..436159 1155..3015 99 <- Minus
3L 436222..436613 763..1154 100 <- Minus
3L 436674..436849 587..762 100 <- Minus
3L 440494..441079 1..586 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:58 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 434299..436159 1155..3015 99 <- Minus
arm_3L 436222..436613 763..1154 100 <- Minus
arm_3L 436674..436849 587..762 100 <- Minus
arm_3L 440494..441079 1..586 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:31:14 Download gff for GM19713.complete
Subject Subject Range Query Range Percent Splice Strand
3L 436674..436849 587..762 100 <- Minus
3L 434299..436159 1155..3015 99 <- Minus
3L 436222..436613 763..1154 100 <- Minus
3L 440494..441079 1..586 99   Minus

GM19713.hyp Sequence

Translation from 492 to 2195

> GM19713.hyp
MGKVSVAVQTDISEMLSATSSTNTSRSSSEQDLLGAWEDLLSWSENASAA
RKLQQEMSVLKSSLQRLGDKPTPELLDTEPAIQIAVEALKLEQTQLTSYR
TNMLRLNASVHSWLTKQERRLQSALEEQEQQQESEQLKQQKLVEEEKGAD
VQKELASTGAVAITVTDSNGNQVEALATGEASTSTPAWDVHTLMSSEQEF
HKHLKNEVSDMYSSWDEADARINTQLEMLTNSLIAWRQLESGLSEFQLAL
GQDRGTLKGLEGALDKGQATPVELAQNVKLVAKLLSEKVHVSQEQLLAVQ
QHLDPNHIYHITKFTASNGSLSDSGISDGGATSDGGLSERERRLGVLRRL
AKQLELALAPGSEAMRSIAARMESAEADLKHLQNTCRDLIVRTAASHQQK
QQIQQNQTQQVSPKANGHIKKQAAKGKAEPQSPGRRGKGARKARQAKKAG
EDQQVEEPSLSPEQQKMVLKQLKTLTSGDGGDDPSDDPSLLFNLESSEED
GEGADPAQTSKRGWAWRIARAAVPMQVALFTIFCAACLMQPNCCDNLNNL
SMSFTPQLRYIRGPPPI*

GM19713.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
klar-PC 567 CG17046-PC 1..567 1..567 2853 100 Plus
klar-PG 1180 CG17046-PG 644..1180 31..567 2712 99.8 Plus
klar-PF 1636 CG17046-PF 1100..1636 31..567 2712 99.8 Plus
klar-PE 2272 CG17046-PE 1736..2272 31..567 2712 99.8 Plus
klar-PB 2045 CG17046-PB 1509..2045 31..567 2712 99.8 Plus

GM19713.pep Sequence

Translation from 492 to 2195

> GM19713.pep
MGKVSVAVQTDISEMLSATSSTNTSRSSSEQDLLGAWEDLLSWSENASAA
RKLQQEMSVLKSSLQRLGDKPTPELLDTEPAIQIAVEALKLEQTQLTSYR
TNMLRLNASVHSWLTKQERRLQSALEEQEQQQESEQLKQQKLVEEEKGAD
VQKELASTGAVAITVTDSNGNQVEALATGEASTSTPAWDVHTLMSSEQEF
HKHLKNEVSDMYSSWDEADARINTQLEMLTNSLIAWRQLESGLSEFQLAL
GQDRGTLKGLEGALDKGQATPVELAQNVKLVAKLLSEKVHVSQEQLLAVQ
QHLDPNHIYHITKFTASNGSLSDSGISDGGATSDGGLSERERRLGVLRRL
AKQLELALAPGSEAMRSIAARMESAEADLKHLQNTCRDLIVRTAASHQQK
QQIQQNQTQQVSPKANGHIKKQAAKGKAEPQSPGRRGKGARKARQAKKAG
EDQQVEEPSLSPEQQKMVLKQLKTLTSGDGGDDPSDDPSLLFNLESSEED
GEGADPAQTSKRGWAWRIARAAVPMQVALFTIFCAACLMQPNCCDNLNNL
SMSFTPQLRYIRGPPPI*

GM19713.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24896-PA 2229 GF24896-PA 1778..2190 31..451 1476 70 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14658-PA 2281 GG14658-PA 1741..2281 31..567 2370 92.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15451-PA 2196 GH15451-PA 1666..2196 31..567 1813 68.5 Plus
Dgri\GH22594-PA 458 GH22594-PA 2..458 92..567 1406 63.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
klar-PC 567 CG17046-PC 1..567 1..567 2853 100 Plus
klar-PG 1180 CG17046-PG 644..1180 31..567 2712 99.8 Plus
klar-PF 1636 CG17046-PF 1100..1636 31..567 2712 99.8 Plus
klar-PE 2272 CG17046-PE 1736..2272 31..567 2712 99.8 Plus
klar-PB 2045 CG17046-PB 1509..2045 31..567 2712 99.8 Plus
klar-PA 2262 CG17046-PA 1726..2262 31..567 2712 99.8 Plus
klar-PI 511 CG17046-PI 1..511 57..567 2582 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16733-PA 2284 GI16733-PA 1755..2284 31..567 1863 71.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22600-PA 1577 GL22600-PA 1040..1577 31..567 2078 79.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14293-PA 2348 GA14293-PA 1811..2348 31..567 2078 79.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14274-PA 2258 GM14274-PA 1722..2258 31..567 2796 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25703-PA 2258 GD25703-PA 1722..2258 31..567 2805 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12478-PA 1251 GJ12478-PA 725..1251 31..567 1847 75.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20119-PA 2428 GK20119-PA 1842..2428 31..567 1842 69.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21018-PA 2275 GE21018-PA 1736..2275 31..567 2420 93.5 Plus