BDGP Sequence Production Resources |
Search the DGRC for GM19713
Library: | GM |
Tissue Source: | Drosophila melanogaster ovary |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 197 |
Well: | 13 |
Vector: | pOT2 |
Associated Gene/Transcript | klar-RC |
Protein status: | GM19713.pep: gold |
Sequenced Size: | 3034 |
Gene | Date | Evidence |
---|---|---|
klar | 2009-10-21 | Manual selection by Sue Celniker |
3034 bp assembled on 2010-02-26
GenBank Submission: BT120378.1
> GM19713.complete CGCGTTCCAAGCGGTTGTTCTCTGTTTCGCTGTCTGTAATTATATTTTAA CGTGCTTCCGCGAAATTGTGTGAAGTAATCCCACTAGAATCCCGCATAAT TCCGCCAAAACAACTGTGATAAAACAAAACTATGCCCTCTAAAGTAACTT AGGCCAGTAAAATCCAACTTAGAAGTGTCCATTCATAAAGTTCCCAAATC GCGTGCTTTTTTTGCCCTGCGTATAAGAGTTCCTGTTTGTTATAAGAGTT TCGCGTAAATTTCGATAGTTTTCAATGCCGAATTGTTCAAGTTACAGTGT ATATAGTGCATATACTTCCATAATCCCTGCAAGTGTGTGCTTCGGAAAAC GAAATTGAAATGGTTTAAAACACAAATTGATTACAAAAATTGATTTCAAG TGGCACATCGAGCGAAAGTGGGTCACTCAGGGGTTGAAGAGAGCTTTTCC CGCCGAGGTCTGCCAGGGGAAAACTCCAAAACCCAGACCACAATGGGGAA AGTCAGCGTGGCCGTCCAGACGGATATATCCGAAATGCTTTCGGCCACTT CTTCCACCAACACATCACGCTCGTCATCGGAGCAAGATCTGCTCGGCGCC TGGGAGGATCTACTTAGCTGGAGCGAGAATGCCTCCGCTGCCCGCAAATT GCAGCAGGAGATGAGTGTGTTGAAGAGCTCGCTGCAGCGCCTGGGAGACA AGCCAACTCCAGAGCTCCTCGATACGGAGCCGGCCATCCAAATAGCAGTG GAGGCGCTCAAGTTGGAGCAGACGCAACTGACCAGCTATAGGACCAACAT GCTGCGTCTTAACGCCTCCGTCCACAGTTGGCTTACCAAGCAGGAGCGGC GACTGCAGAGCGCCTTGGAGGAACAGGAGCAGCAACAGGAGTCCGAACAA CTCAAGCAGCAAAAACTTGTTGAAGAGGAGAAGGGAGCTGACGTTCAGAA GGAGCTGGCGTCTACCGGAGCAGTGGCCATCACGGTCACCGACAGCAATG GTAATCAGGTGGAGGCACTAGCCACAGGAGAAGCCTCCACCTCCACGCCA GCCTGGGATGTGCACACGCTGATGTCATCGGAGCAGGAGTTCCATAAGCA TCTGAAGAACGAAGTGAGCGACATGTACAGTTCCTGGGATGAGGCGGATG CCAGAATCAACACGCAACTGGAAATGCTTACCAACTCGCTTATTGCCTGG AGGCAGTTGGAGTCCGGTTTGAGTGAGTTCCAATTGGCTTTGGGCCAAGA TAGGGGCACTCTGAAGGGTCTTGAAGGAGCTCTGGACAAGGGACAAGCCA CACCAGTCGAGCTGGCCCAGAATGTAAAACTGGTGGCCAAGCTGCTGTCC GAAAAGGTTCACGTAAGCCAGGAGCAACTTTTGGCCGTCCAGCAGCACCT GGACCCCAACCACATCTACCACATTACGAAGTTTACAGCCTCAAATGGCT CGCTATCAGATTCCGGCATCTCTGATGGAGGAGCTACTTCTGATGGTGGC CTGTCCGAGAGGGAGCGACGACTGGGAGTTCTTCGACGCCTAGCAAAGCA GTTGGAACTAGCTCTGGCGCCGGGAAGCGAAGCCATGCGTTCTATTGCTG CCCGAATGGAAAGTGCCGAGGCCGACCTGAAGCACCTGCAGAACACCTGT AGAGACTTAATTGTTCGCACTGCAGCTAGCCACCAGCAGAAGCAGCAGAT CCAGCAAAATCAGACCCAGCAGGTGTCACCGAAGGCCAATGGACACATTA AGAAGCAGGCCGCAAAGGGCAAGGCAGAACCCCAGTCGCCTGGCAGACGT GGTAAAGGAGCTCGAAAGGCGCGTCAGGCCAAGAAGGCTGGAGAGGATCA GCAAGTAGAGGAGCCAAGTCTCAGCCCAGAACAGCAGAAGATGGTCCTGA AGCAACTCAAGACCTTGACAAGTGGCGATGGTGGGGACGACCCCTCTGAC GATCCCTCGTTGCTCTTCAACCTGGAAAGCTCCGAGGAAGATGGAGAGGG AGCGGATCCTGCACAGACCTCTAAGCGAGGGTGGGCGTGGCGCATCGCGA GGGCGGCAGTGCCTATGCAGGTGGCCCTGTTCACAATCTTCTGCGCTGCC TGCCTGATGCAACCCAACTGCTGCGACAATCTGAACAACCTGTCCATGAG CTTCACGCCGCAGCTCCGCTATATCCGTGGACCACCTCCGATCTGAGGAC AGAGCGCGACTAATTAAGCAGGCCGCTAATCGTTGTAGGTTACCGTTACG TTATGTTAAGGCATTTAACAGCTGTAACTAGAGTTAACCAGCGCAACCAG CCACTTAGGCAGAGCCACTAAGAGCTCGCCTGTGGCGCGCGTTTTCCGCG CTCGAGGTTTTACAATCCCGAACAGAGCGCTCTCCTCCGAAAGGTGCGAC ACCCAGAGGCAGCCCAATTTTATATGTCTAATTTAGGTAGCGAGCGCGAA AGGAACGCAATTTATAGTAAGGATGTATTTGTTATTTCGGTTAATTTCCT ACGAGTTTAGGTTGCTGTTCGATTGAACGCTGAATATGTACTTAGGCGAG GAGCAGACGATGCCCAGCCACGTGTAAACTGCCGCATAAAGGAACAAAGG GGCGGATCGTCCCCCAGATTCTTACCCAGTAAATATGATACAAGCACAAT GATCAATTGAGTGGCGTTTTTGTATACTTTTTTGTTTGAAAAACACTAAA GTGCCTACAAATGCGAACTGTGAACGAGGAGCTACCAGCAGATGACAAAG GATCCGTCGAGGAGTCCAAACGAGAGTATGAATCCAAGGCACCGAAGCAA ACAGAAGCTAAAAAGCCAACAGCACTAAGGAGCTAGCAATGGAGCTCACC AGAACAGCGATGAAGAATCAGAGTTTATATTTTTATACGCAACGCAACTA TACACAATCAGTGCGGAGACAACGAATCTTCAGCCAACACACATCATACG TTTTATGTCTATTATATTAATAGGATAAACCTTACACTTATTTTGCAAGA AAACAAAAATTCAACAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 434212..436077 | 3015..1152 | 9250 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 440413..440998 | 586..1 | 2870 | 99.3 | Minus |
chr3L | 24539361 | chr3L | 436137..436530 | 1154..761 | 1895 | 98.7 | Minus |
chr3L | 24539361 | chr3L | 436589..436766 | 762..585 | 890 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
snmRNA:438-RA | 64 | CR33660-RA | 1..64 | 2396..2459 | 320 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 434285..436162 | 3029..1152 | 9375 | 99.9 | Minus |
3L | 28110227 | 3L | 440494..441079 | 586..1 | 2870 | 99.3 | Minus |
3L | 28110227 | 3L | 436222..436615 | 1154..761 | 1970 | 100 | Minus |
3L | 28110227 | 3L | 436674..436851 | 762..585 | 890 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 434285..436162 | 3029..1152 | 9375 | 99.9 | Minus |
3L | 28103327 | 3L | 440494..441079 | 586..1 | 2870 | 99.3 | Minus |
3L | 28103327 | 3L | 436222..436615 | 1154..761 | 1970 | 100 | Minus |
3L | 28103327 | 3L | 436674..436851 | 762..585 | 890 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
roo | 9092 | roo DM_ROO 9092bp | 1089..1151 | 839..901 | 134 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6876 | 839..997 | 132 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2397 | 835..916 | 128 | 63.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1053..1101 | 1672..1721 | 121 | 74 | Plus |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 692..731 | 2976..3015 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6842 | 839..916 | 118 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2823 | 872..916 | 117 | 73.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 434212..436074 | 1155..3015 | 99 | <- | Minus |
chr3L | 436137..436528 | 763..1154 | 98 | <- | Minus |
chr3L | 436589..436764 | 587..762 | 100 | <- | Minus |
chr3L | 440413..440998 | 1..586 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
klar-RC | 1..1704 | 493..2196 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
klar-RC | 1..1704 | 493..2196 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
klar-RC | 1..1704 | 493..2196 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
klar-RC | 1..1704 | 493..2196 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
snmRNA:438-RA | 1..64 | 2396..2459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
klar-RC | 1..3015 | 1..3015 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
klar-RC | 1..3015 | 1..3015 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
klar-RC | 18..3032 | 1..3015 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
klar-RC | 18..3032 | 1..3015 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 434299..436159 | 1155..3015 | 99 | <- | Minus |
3L | 436222..436613 | 763..1154 | 100 | <- | Minus |
3L | 436674..436849 | 587..762 | 100 | <- | Minus |
3L | 440494..441079 | 1..586 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 434299..436159 | 1155..3015 | 99 | <- | Minus |
3L | 436222..436613 | 763..1154 | 100 | <- | Minus |
3L | 436674..436849 | 587..762 | 100 | <- | Minus |
3L | 440494..441079 | 1..586 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 434299..436159 | 1155..3015 | 99 | <- | Minus |
3L | 436222..436613 | 763..1154 | 100 | <- | Minus |
3L | 436674..436849 | 587..762 | 100 | <- | Minus |
3L | 440494..441079 | 1..586 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 434299..436159 | 1155..3015 | 99 | <- | Minus |
arm_3L | 436222..436613 | 763..1154 | 100 | <- | Minus |
arm_3L | 436674..436849 | 587..762 | 100 | <- | Minus |
arm_3L | 440494..441079 | 1..586 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 436674..436849 | 587..762 | 100 | <- | Minus |
3L | 434299..436159 | 1155..3015 | 99 | <- | Minus |
3L | 436222..436613 | 763..1154 | 100 | <- | Minus |
3L | 440494..441079 | 1..586 | 99 | Minus |
Translation from 492 to 2195
> GM19713.hyp MGKVSVAVQTDISEMLSATSSTNTSRSSSEQDLLGAWEDLLSWSENASAA RKLQQEMSVLKSSLQRLGDKPTPELLDTEPAIQIAVEALKLEQTQLTSYR TNMLRLNASVHSWLTKQERRLQSALEEQEQQQESEQLKQQKLVEEEKGAD VQKELASTGAVAITVTDSNGNQVEALATGEASTSTPAWDVHTLMSSEQEF HKHLKNEVSDMYSSWDEADARINTQLEMLTNSLIAWRQLESGLSEFQLAL GQDRGTLKGLEGALDKGQATPVELAQNVKLVAKLLSEKVHVSQEQLLAVQ QHLDPNHIYHITKFTASNGSLSDSGISDGGATSDGGLSERERRLGVLRRL AKQLELALAPGSEAMRSIAARMESAEADLKHLQNTCRDLIVRTAASHQQK QQIQQNQTQQVSPKANGHIKKQAAKGKAEPQSPGRRGKGARKARQAKKAG EDQQVEEPSLSPEQQKMVLKQLKTLTSGDGGDDPSDDPSLLFNLESSEED GEGADPAQTSKRGWAWRIARAAVPMQVALFTIFCAACLMQPNCCDNLNNL SMSFTPQLRYIRGPPPI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
klar-PC | 567 | CG17046-PC | 1..567 | 1..567 | 2853 | 100 | Plus |
klar-PG | 1180 | CG17046-PG | 644..1180 | 31..567 | 2712 | 99.8 | Plus |
klar-PF | 1636 | CG17046-PF | 1100..1636 | 31..567 | 2712 | 99.8 | Plus |
klar-PE | 2272 | CG17046-PE | 1736..2272 | 31..567 | 2712 | 99.8 | Plus |
klar-PB | 2045 | CG17046-PB | 1509..2045 | 31..567 | 2712 | 99.8 | Plus |
Translation from 492 to 2195
> GM19713.pep MGKVSVAVQTDISEMLSATSSTNTSRSSSEQDLLGAWEDLLSWSENASAA RKLQQEMSVLKSSLQRLGDKPTPELLDTEPAIQIAVEALKLEQTQLTSYR TNMLRLNASVHSWLTKQERRLQSALEEQEQQQESEQLKQQKLVEEEKGAD VQKELASTGAVAITVTDSNGNQVEALATGEASTSTPAWDVHTLMSSEQEF HKHLKNEVSDMYSSWDEADARINTQLEMLTNSLIAWRQLESGLSEFQLAL GQDRGTLKGLEGALDKGQATPVELAQNVKLVAKLLSEKVHVSQEQLLAVQ QHLDPNHIYHITKFTASNGSLSDSGISDGGATSDGGLSERERRLGVLRRL AKQLELALAPGSEAMRSIAARMESAEADLKHLQNTCRDLIVRTAASHQQK QQIQQNQTQQVSPKANGHIKKQAAKGKAEPQSPGRRGKGARKARQAKKAG EDQQVEEPSLSPEQQKMVLKQLKTLTSGDGGDDPSDDPSLLFNLESSEED GEGADPAQTSKRGWAWRIARAAVPMQVALFTIFCAACLMQPNCCDNLNNL SMSFTPQLRYIRGPPPI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24896-PA | 2229 | GF24896-PA | 1778..2190 | 31..451 | 1476 | 70 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14658-PA | 2281 | GG14658-PA | 1741..2281 | 31..567 | 2370 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15451-PA | 2196 | GH15451-PA | 1666..2196 | 31..567 | 1813 | 68.5 | Plus |
Dgri\GH22594-PA | 458 | GH22594-PA | 2..458 | 92..567 | 1406 | 63.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
klar-PC | 567 | CG17046-PC | 1..567 | 1..567 | 2853 | 100 | Plus |
klar-PG | 1180 | CG17046-PG | 644..1180 | 31..567 | 2712 | 99.8 | Plus |
klar-PF | 1636 | CG17046-PF | 1100..1636 | 31..567 | 2712 | 99.8 | Plus |
klar-PE | 2272 | CG17046-PE | 1736..2272 | 31..567 | 2712 | 99.8 | Plus |
klar-PB | 2045 | CG17046-PB | 1509..2045 | 31..567 | 2712 | 99.8 | Plus |
klar-PA | 2262 | CG17046-PA | 1726..2262 | 31..567 | 2712 | 99.8 | Plus |
klar-PI | 511 | CG17046-PI | 1..511 | 57..567 | 2582 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16733-PA | 2284 | GI16733-PA | 1755..2284 | 31..567 | 1863 | 71.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22600-PA | 1577 | GL22600-PA | 1040..1577 | 31..567 | 2078 | 79.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14293-PA | 2348 | GA14293-PA | 1811..2348 | 31..567 | 2078 | 79.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14274-PA | 2258 | GM14274-PA | 1722..2258 | 31..567 | 2796 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25703-PA | 2258 | GD25703-PA | 1722..2258 | 31..567 | 2805 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12478-PA | 1251 | GJ12478-PA | 725..1251 | 31..567 | 1847 | 75.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20119-PA | 2428 | GK20119-PA | 1842..2428 | 31..567 | 1842 | 69.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21018-PA | 2275 | GE21018-PA | 1736..2275 | 31..567 | 2420 | 93.5 | Plus |