Clone GM20958 Report

Search the DGRC for GM20958

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:209
Well:58
Vector:pOT2
Associated Gene/TranscriptCG33964-RA
Protein status:GM20958.pep: gold
Preliminary Size:426
Sequenced Size:2308

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13175 2002-01-01 Sim4 clustering to Release 2
CG33154 2002-06-13 Blastp of sequenced clone
CG33154 2003-01-01 Sim4 clustering to Release 3
CG33964 2008-04-29 Release 5.5 accounting
CG33964 2008-08-15 Release 5.9 accounting
CG13175 2008-08-15 Release 5.9 accounting
CG13175 2008-12-18 5.12 accounting
CG33964 2008-12-18 5.12 accounting

Clone Sequence Records

GM20958.complete Sequence

2308 bp (2308 high quality bases) assembled on 2002-06-13

GenBank Submission: BT003595

> GM20958.complete
AATCACATTTCGGGTAAAAACAAATTGAAATATCCACCGAATTTAAATAT
TAAAGTTAGAGAAGCTGCCAAATATCTGGAGTTACAATCAGGGACAAGGA
CAAGGACTACTACACTAGAGGAGAGCTTTTACAAGCAATCCGGTGAAACC
ACATATAATGACAAGTCCGTCGCGGGATATAAACGATCTTTTTGACGATA
TTGTCCTGACCGAGGAGAAGGAGGCACGTTTGGGCTACGAGGAGGGACTG
AAGGACGGCCAGGAGCAGGGCAACGAAGAGGGCTATAAATTGGGCTACGC
CCAGGGAGTATCCCTAGGCGAGGAGCTCGGCAAGATTCTGGGCCAGGTGG
TGGCCCAGCAGCAGCTGAAACACACGGACAAGGTGCGTCGCAGCTTGGAA
CAGTTGCGTTCGCTCATCGAGGAGTTTCCCCGCACCAACGATCCGCAGGC
GGACATAGTGGGTGCTGTGCAGGACATTCGCTCCTCCCATCGTCGCCTTC
GCGCCCAGCTGGGATCCAAAAAAACGCCTGGTGCAGCGCCTGCAGAGACC
AATTCTGTCGAGCACAAGGACTACAGCTTCTAGCCTTATAGCACCATGTC
CAAGGTGGGAGTTGTGCAGTTGCAGAGGCGTCTGGATGGCTTACTGGCCT
TCCTCAATCCGCACTGGGATTTTGTCAATTGCCACATGGTGAACTACTTG
ACGGACCAGCACTGGGACGGCTTTTTATCCGAAACGCTGAAAAGTGAGAT
CGCCGGCAAGGAAGATGTGGCTCTGGCCATAGAAGACCTATTTTGGAAAA
CTGATGAATCAGAAAGGTTTCCGGCATGGCGAGAATTCCTAGGCAAGAGC
AAACAAGAACGCCTGTCGCTTCATCCGAAACTCCTGACCAGCGTGGAGGA
ACTTATCGAGGGTCAGGGGAACTCCACGCAGCTAAGCATTCGGGAGTTTA
TGAGCGCCAAAAAGTGCCATGAGGTGGATCTAACAGCCGTTCTCGTGGAC
CAGCTTGTGAAGAACTCCGGTCAAGATTGCTTCATTGTAGACGCGGGCGA
TGGCAAAGGGTATTTATCCTCGCGCTTGGCGCTCCAGTATGGTCACCGCG
TGCTCGGCATCGATGCGAACGCGGCAAACACCGAGAACGCATTGAATAGG
AATCGCAAATTGCAGCGCGCTTGGAATGGCCTTACGGAACGAGCGGAGCT
GCAAGTCCAGGGAATCACGCCCAAGAGACGTAGTAAAAAGTCGCCAGCCA
GGGAGAGCACCAAGAGTGCGCCTGCCTTGGAAAACTACAAGACAACGGCA
AAGTTTATAACCACCGAACTTAACTTTGGTGCCCTGCTGGCGGAGAATTT
CACTCAGTTTAGACCGGAAGACAGTCCAAACATTTGCCTTACTGGATTGC
ATACCTGTGGCAACCTGGCCGCCACCTGTCTTCAGGTTTTCCACGCCCAA
ACGGACTGCCGGTTGCTTTGTAATGTTGGCTGCTGCTATCATTTGCTGCG
GGAGCGCTATTCGCAGCAGGAGTTCTTTGGCAATAAGTCCCTGATGGAGC
TGCAAACAGACTATGGATTCCCATTGAGTCAGTACCTGCGGGAGCGACAA
GTGCGAATGGGTCGCAATGCGCGGATGCTGGCGGCCCAGTCAATTGAACG
CACCTTGGACACCAAGGAGCTGCCTAATGTAACGCTCTACTATCGAGCTC
TCTTGGAGATTCTGGTTTGCCGCCATGCGCCGGAGCTGAAAAACGAACTG
CAGGTGGGCAAGGTACGGAAATTCGAGAGTTTCGAGGAGTACATTCAAAA
GTGTGCCACCAAATTGGATGCTCCCTGGTTGGCAGCTGTTGAGAAAGAAG
AACTTCAATCCCTGCTCCAGGAATATGCCGTGCATAAATACTTCTTGGAT
CTGTTCTATCTGCTGCGCATGTCCTTTGCTCCGGTGCTGGAGAGTCTAAT
TCTCCTGGATCGCCTGCTCTACCTCAAGGAACTTGGCTATGAACGCAGCT
ATCTGATAGATTTATTTGATCCCGTCATTTCGCCCAGGCATTTTGCAATT
GTTTCTATAAAGCAGCAAACGCAACAATAATGAAATTCACAAATGCATCA
AAAGCTTGACGAGAAAGCCGGTTGTGTTTAATTATTTATAGATTATAGCG
TGCAATACTTTTCATATCGTATATGTATTGCTTATGTATGTAACGCTTTT
AAAAATCTAACTAAACCATAGCACACAAAAAGTAAATAAGGTTGTTAAAA
CTAAGAATCATTATAATAAATGTAATCATGACTTGTAAAAAAAAAAAAAA
AAAAAAAA

GM20958.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13175-RA 2249 CG13175-RA 878..2249 908..2286 6735 99.3 Plus
CG13175-RA 2249 CG13175-RA 5..877 1..873 4365 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8071600..8072721 1158..2286 5460 99.1 Plus
chr2R 21145070 chr2R 8069854..8070726 1..873 4365 100 Plus
chr2R 21145070 chr2R 8070852..8071045 972..1165 970 100 Plus
chr2R 21145070 chr2R 8070727..8070794 908..975 340 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:25:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12184385..12185508 1158..2288 5470 99.1 Plus
2R 25286936 2R 12182639..12183511 1..873 4365 100 Plus
2R 25286936 2R 12183637..12183830 972..1165 970 100 Plus
2R 25286936 2R 12183512..12183579 908..975 340 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12185584..12186607 1158..2181 5090 99.8 Plus
2R 25260384 2R 12183838..12184710 1..873 4365 100 Plus
2R 25260384 2R 12184836..12185029 972..1165 970 100 Plus
2R 25260384 2R 12186610..12186707 2191..2288 490 100 Plus
2R 25260384 2R 12184711..12184778 908..975 340 100 Plus
Blast to na_te.dros performed 2019-03-16 01:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 4290..4394 1..109 148 62.4 Plus

GM20958.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:25:54 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8069854..8070726 1..873 100 == Plus
chr2R 8070727..8070792 908..973 100 -> Plus
chr2R 8070854..8071045 974..1165 100 -> Plus
chr2R 8071608..8072721 1166..2286 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:10:01 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
CG33964-RA 1..278 596..873 100 == Plus
CG33964-RA 279..1451 908..2080 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:21:43 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
CG33964-RA 1..278 596..873 100 == Plus
CG33964-RA 279..1451 908..2080 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:05:54 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
CG33964-RA 1..278 596..873 100 == Plus
CG33964-RA 279..1451 908..2080 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:12:32 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
CG33964-RA 1..278 596..873 100 == Plus
CG33964-RA 279..1451 908..2080 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:32:51 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
CG33964-RA 1..278 596..873 100 == Plus
CG33964-RA 279..1451 908..2080 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:47:59 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
CG33964-RA 874..2245 908..2286 99   Plus
CG33964-RA 1..873 1..873 100 == Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:21:43 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
CG33964-RA 1..873 1..873 100 == Plus
CG33964-RA 874..2245 908..2286 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:05:54 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
CG13175-RA 1..873 1..873 100 == Plus
CG13175-RA 874..2245 908..2286 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:12:32 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
CG33964-RA 1..873 1..873 100 == Plus
CG33964-RA 874..2245 908..2286 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:32:51 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
CG13175-RA 1..873 1..873 100 == Plus
CG13175-RA 874..2245 908..2286 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:25:54 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12182639..12183511 1..873 100 == Plus
2R 12183512..12183577 908..973 100 -> Plus
2R 12183639..12183830 974..1165 100 -> Plus
2R 12184393..12185506 1166..2286 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:25:54 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12182639..12183511 1..873 100 == Plus
2R 12183512..12183577 908..973 100 -> Plus
2R 12183639..12183830 974..1165 100 -> Plus
2R 12184393..12185506 1166..2286 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:25:54 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12182639..12183511 1..873 100 == Plus
2R 12183512..12183577 908..973 100 -> Plus
2R 12183639..12183830 974..1165 100 -> Plus
2R 12184393..12185506 1166..2286 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:05:54 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8070144..8071016 1..873 100 == Plus
arm_2R 8071017..8071082 908..973 100 -> Plus
arm_2R 8071144..8071335 974..1165 100 -> Plus
arm_2R 8071898..8073011 1166..2286 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:14 Download gff for GM20958.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12183838..12184710 1..873 100 == Plus
2R 12184711..12184776 908..973 100 -> Plus
2R 12184838..12185029 974..1165 100 -> Plus
2R 12185592..12186705 1166..2286 99   Plus

GM20958.pep Sequence

Translation from 595 to 2079

> GM20958.pep
MSKVGVVQLQRRLDGLLAFLNPHWDFVNCHMVNYLTDQHWDGFLSETLKS
EIAGKEDVALAIEDLFWKTDESERFPAWREFLGKSKQERLSLHPKLLTSV
EELIEGQGNSTQLSIREFMSAKKCHEVDLTAVLVDQLVKNSGQDCFIVDA
GDGKGYLSSRLALQYGHRVLGIDANAANTENALNRNRKLQRAWNGLTERA
ELQVQGITPKRRSKKSPARESTKSAPALENYKTTAKFITTELNFGALLAE
NFTQFRPEDSPNICLTGLHTCGNLAATCLQVFHAQTDCRLLCNVGCCYHL
LRERYSQQEFFGNKSLMELQTDYGFPLSQYLRERQVRMGRNARMLAAQSI
ERTLDTKELPNVTLYYRALLEILVCRHAPELKNELQVGKVRKFESFEEYI
QKCATKLDAPWLAAVEKEELQSLLQEYAVHKYFLDLFYLLRMSFAPVLES
LILLDRLLYLKELGYERSYLIDLFDPVISPRHFAIVSIKQQTQQ*

GM20958.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12827-PA 492 GF12827-PA 1..490 1..492 2049 77.5 Plus
Dana\GF13650-PA 444 GF13650-PA 7..442 26..491 218 23.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20255-PA 492 GG20255-PA 1..489 1..489 2313 89.8 Plus
Dere\GG23319-PA 465 GG23319-PA 115..431 119..464 196 25.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22793-PA 497 GH22793-PA 4..496 5..489 1701 68.4 Plus
Dgri\GH20605-PA 462 GH20605-PA 30..461 19..489 242 26.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG33964-PA 494 CG33964-PA 1..494 1..494 2564 100 Plus
CG2906-PE 364 CG2906-PE 26..363 122..489 212 25.9 Plus
CG2906-PD 456 CG2906-PD 118..455 122..489 212 25.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20589-PA 495 GI20589-PA 1..494 1..490 1634 64.4 Plus
Dmoj\GI20447-PA 454 GI20447-PA 92..403 122..464 239 27.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10807-PA 494 GL10807-PA 4..491 5..489 1967 75.2 Plus
Dper\GL11477-PA 470 GL11477-PA 119..458 119..489 226 25.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17328-PA 494 GA17328-PA 4..491 5..489 1952 74.8 Plus
Dpse\GA15509-PA 470 GA15509-PA 119..458 119..489 235 25.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21342-PA 494 GM21342-PA 1..494 1..494 2420 93.1 Plus
Dsec\GM20996-PA 456 GM20996-PA 115..455 119..489 209 24.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15405-PA 494 GD15405-PA 1..494 1..494 2432 93.9 Plus
Dsim\GD15402-PA 191 GD15402-PA 1..190 1..190 955 93.7 Plus
Dsim\GD10527-PA 456 GD10527-PA 115..455 119..489 208 24.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20770-PA 493 GJ20770-PA 1..492 1..489 1654 64.2 Plus
Dvir\GJ20117-PA 436 GJ20117-PA 119..433 119..464 228 25.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22174-PA 490 GK22174-PA 1..489 1..489 1774 68.6 Plus
Dwil\GK15844-PA 413 GK15844-PA 88..411 115..464 189 24.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12415-PA 492 GE12415-PA 1..492 1..492 2308 89.2 Plus
Dyak\GE19163-PA 463 GE19163-PA 113..429 119..464 212 27.2 Plus

GM20958.hyp Sequence

Translation from 825 to 2045

> GM20958.hyp
MARIPRQEQTRTPVASEGQGNSTQLSIREFMSAKKCHEVDLTAVLVDQLV
KNSGQDCFIVDAGDGKGYLSSRLALQYGHRVLGIDANAANTENALNRNRK
LQRAWNGLTERAELQVQGITPKRRGKKSPARESTKSAPALENYKTTAKFI
TTELNFGALLAENFTQFRPEDSPNICLTGLHTCGNLAATCLQVFHAQTDC
RLLCNVGCCYHLLRERYSQQEFFGNKSLMELQTDYGFPLSQYLRERQVRM
GRNARMLAAQSIERTLDTKELPNVTLYYRALLEILVCRHAPELKNELQVG
KVRKFESFEEYIQKCATKLDAPWLAAVEKEELQSLLQEYAVHKYFLDLFY
LLRMSFAPVLESLILLDRLLYLKELGYERSYLIDLFDPVISPRHFAIVSI
KQQTQQ*

GM20958.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG33964-PA 494 CG33964-PA 105..494 17..406 2009 99.7 Plus
CG2906-PE 364 CG2906-PE 26..363 34..401 211 25.9 Plus
CG2906-PD 456 CG2906-PD 118..455 34..401 211 25.9 Plus