Clone GM21055 Report

Search the DGRC for GM21055

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:210
Well:55
Vector:pOT2
Associated Gene/TranscriptCG13902-RB
Protein status:GM21055.pep: gold
Preliminary Size:1185
Sequenced Size:1388

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13902 2002-01-01 Sim4 clustering to Release 2
CG13902 2003-01-01 Sim4 clustering to Release 3
CG13902 2003-01-22 Blastp of sequenced clone
CG13902 2008-04-29 Release 5.5 accounting
CG13902 2008-08-15 Release 5.9 accounting
CG13902 2008-12-18 5.12 accounting

Clone Sequence Records

GM21055.complete Sequence

1388 bp (1388 high quality bases) assembled on 2003-01-22

GenBank Submission: BT003596

> GM21055.complete
CTGAATGTAAGCTAAAAGGTAAACAAATAATAGTTGTTTAACATTCTATG
GATAGTGAGTTCCTGGAGCTGACGCAGCTGCTGCCCCGCTGGGTGGATCT
GGAAAATGTGGTCCGTGGTGAAGTCGAGGCGCGCTACATACTCAAAAGAG
CCGCGGATCACCTGGCGAACTTGAGGTCTGGCGGAGATTCCGGGGCGGAG
GAAACCGGATATCTGGTAGGTGCGCTGGTGGACAGGAACTGGGAACGCAT
TCACACAGGGCACTTCAGCCAGGTTCCCTTGGTCACGAGGAAGATATACG
CCATAGCCTGTTGCTTCAAGATTTTTTTCCTTCTCTTGGAGAGCACTAGT
CCCGCCCAGAAGGATGCGTGCAGTGAGATCCTCGATGAGGCTCAACTTTT
GGGTTGCATGGAGGATTGGAGTGAACTGAAAGTCGCCCTAATGGATTATC
TCGACAAGGATGGAGCAGTAGCACTGAATTCCGCACCACTTCCAACTCTA
GAGCCATTAACCCGAGTAACCTCCAACTGTGATATACCCCAACTGGACGC
TCCCAGTCTAGAAGAGTTCCAGACAAAGTGCTTTGAGGCAGGACAACCCA
CACTCCTGCTCAACACCATCCAGCATTGGCCTGCACTGCACAAATGGCTG
GATCTCAATTACCTTCTCCAAGTGGCCGGGAATCGCACGGTGCCCATTGA
AATAGGTTCCAACTATGCCAGCGATGAATGGTCCCAGCAGCTGGTGAAGA
TCCGCGACTTCCTGAGCAGACAATTCGGAAAGGAACCAAGCAAGGCTGGC
CAAAATATCGAGTATCTCGCTCAGCACGAGCTCTTCGCCCAGATACCAGC
CCTCAAAGAGGATATATCCATTCCCGACTACTGCACCATCAGCAACGAAG
ATACCCCAGGAGCTGTGGACATCAAAGCCTGGCTGGGACCAGCTGGAACC
GTATCTCCCATGCACTACGATCCCAAGCACAACTTGCTGTGCCAGGTATT
CGGTTCGAAGAGGATCATCCTAGCTGCTCCTGCAGACACAGACAATCTGT
ATCCCCACGACAGTGAGTTTTTGGCCAATACAGCGCGAATAGATGCTGCT
CAACTGGATCCTGAAACATATCCCTTGGTAGCCAAGGTGAAGTTCTACCA
GCTGCTCCTGCAACCTGGTGACTGTTTGTACATGCCACCCAAATGGTGGC
ACTATGTGAGATCTGAAGCTCCTAGCTTCTCTGTAAGCTTCTGGTGGGAG
TAAGCATTTTAATGCAGTTTATTGAACAGCAAATTTATGTAGGATGATCT
CTGTTCAAGTTAAGATTAAAGTATGCACTGCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GM21055.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13902-RB 1377 CG13902-RB 26..1360 1..1335 6675 100 Plus
CG13902.a 1310 CG13902.a 319..1310 340..1331 4960 100 Plus
CG13902.a 1310 CG13902.a 1..321 1..321 1605 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 839765..840777 1331..319 4870 98.7 Minus
chr3L 24539361 chr3L 840827..841146 320..1 1525 98.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:25:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 839976..840992 1335..319 5085 100 Minus
3L 28110227 3L 841042..841361 320..1 1600 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 839976..840992 1335..319 5085 100 Minus
3L 28103327 3L 841042..841361 320..1 1600 100 Minus
Blast to na_te.dros performed 2019-03-16 01:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 2195..2233 554..592 123 79.5 Plus

GM21055.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:32:54 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 839765..840775 321..1331 98 <- Minus
chr3L 840827..841146 1..320 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:10:03 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
CG13902-RA 1..263 48..310 100 == Plus
CG13902-RA 264..1185 331..1253 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:54:15 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
CG13902-RB 1..1206 48..1253 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:07:25 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
CG13902-RB 1..1206 48..1253 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:45:18 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
CG13902-RA 1..263 48..310 100 == Plus
CG13902-RA 264..1185 331..1253 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:35:35 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
CG13902-RB 1..1206 48..1253 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:09:08 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
CG13902-RA 1..310 1..310 100 == Plus
CG13902-RA 311..1310 331..1331 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:54:15 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
CG13902-RB 1..1331 1..1331 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:07:25 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
CG13902-RB 1..1330 2..1331 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:45:19 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
CG13902-RA 1..310 1..310 100 == Plus
CG13902-RA 311..1310 331..1331 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:35:35 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
CG13902-RB 1..1330 2..1331 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:54 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
3L 839980..840990 321..1331 100 <- Minus
3L 841042..841361 1..320 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:54 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
3L 839980..840990 321..1331 100 <- Minus
3L 841042..841361 1..320 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:54 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
3L 839980..840990 321..1331 100 <- Minus
3L 841042..841361 1..320 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:07:25 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 839980..840990 321..1331 100 <- Minus
arm_3L 841042..841361 1..320 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:16:18 Download gff for GM21055.complete
Subject Subject Range Query Range Percent Splice Strand
3L 839980..840990 321..1331 100 <- Minus
3L 841042..841361 1..320 100   Minus

GM21055.hyp Sequence

Translation from 47 to 1252

> GM21055.hyp
MDSEFLELTQLLPRWVDLENVVRGEVEARYILKRAADHLANLRSGGDSGA
EETGYLVGALVDRNWERIHTGHFSQVPLVTRKIYAIACCFKIFFLLLEST
SPAQKDACSEILDEAQLLGCMEDWSELKVALMDYLDKDGAVALNSAPLPT
LEPLTRVTSNCDIPQLDAPSLEEFQTKCFEAGQPTLLLNTIQHWPALHKW
LDLNYLLQVAGNRTVPIEIGSNYASDEWSQQLVKIRDFLSRQFGKEPSKA
GQNIEYLAQHELFAQIPALKEDISIPDYCTISNEDTPGAVDIKAWLGPAG
TVSPMHYDPKHNLLCQVFGSKRIILAAPADTDNLYPHDSEFLANTARIDA
AQLDPETYPLVAKVKFYQLLLQPGDCLYMPPKWWHYVRSEAPSFSVSFWW
E*

GM21055.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13902-PB 401 CG13902-PB 1..401 1..401 2139 100 Plus
CG13902-PC 394 CG13902-PC 1..394 1..401 2088 98.3 Plus
CG10133-PA 316 CG10133-PA 31..294 169..401 204 24.7 Plus

GM21055.pep Sequence

Translation from 47 to 1252

> GM21055.pep
MDSEFLELTQLLPRWVDLENVVRGEVEARYILKRAADHLANLRSGGDSGA
EETGYLVGALVDRNWERIHTGHFSQVPLVTRKIYAIACCFKIFFLLLEST
SPAQKDACSEILDEAQLLGCMEDWSELKVALMDYLDKDGAVALNSAPLPT
LEPLTRVTSNCDIPQLDAPSLEEFQTKCFEAGQPTLLLNTIQHWPALHKW
LDLNYLLQVAGNRTVPIEIGSNYASDEWSQQLVKIRDFLSRQFGKEPSKA
GQNIEYLAQHELFAQIPALKEDISIPDYCTISNEDTPGAVDIKAWLGPAG
TVSPMHYDPKHNLLCQVFGSKRIILAAPADTDNLYPHDSEFLANTARIDA
AQLDPETYPLVAKVKFYQLLLQPGDCLYMPPKWWHYVRSEAPSFSVSFWW
E*

GM21055.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25024-PA 397 GF25024-PA 1..397 1..401 1612 75.3 Plus
Dana\GF10950-PA 315 GF10950-PA 30..294 168..401 189 26 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14633-PA 401 GG14633-PA 1..401 1..401 1970 91.5 Plus
Dere\GG13765-PA 316 GG13765-PA 31..294 169..401 197 25.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16027-PA 407 GH16027-PA 8..407 5..401 1452 68.9 Plus
Dgri\GH14673-PA 315 GH14673-PA 31..297 167..401 187 25.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
JMJD5-PB 401 CG13902-PB 1..401 1..401 2139 100 Plus
JMJD5-PC 394 CG13902-PC 1..394 1..401 2088 98.3 Plus
JMJD7-PA 316 CG10133-PA 31..294 169..401 204 24.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12291-PA 399 GI12291-PA 7..399 7..401 1406 67.8 Plus
Dmoj\GI13783-PA 320 GI13783-PA 33..296 169..401 193 25.1 Plus
Dmoj\GI22022-PA 401 GI22022-PA 129..240 291..399 155 33.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16337-PA 398 GL16337-PA 5..398 8..400 1538 73 Plus
Dper\GL25429-PA 321 GL25429-PA 24..294 163..401 194 26.2 Plus
Dper\GL13765-PA 398 GL13765-PA 34..237 196..399 156 26.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12613-PA 398 GA12613-PA 5..398 8..400 1524 72.7 Plus
Dpse\GA10099-PA 321 GA10099-PA 24..294 163..401 204 26.5 Plus
Dpse\GA11879-PA 398 GA11879-PA 34..237 196..399 156 26.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14248-PA 401 GM14248-PA 1..401 1..401 2061 95.8 Plus
Dsec\GM24589-PA 316 GM24589-PA 31..294 169..401 200 25.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13505-PA 401 GD13505-PA 1..401 1..401 2019 93.8 Plus
Dsim\GD12657-PA 316 GD12657-PA 31..294 169..401 201 25.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13228-PA 409 GJ13228-PA 4..409 1..401 1437 67 Plus
Dvir\GJ13585-PA 320 GJ13585-PA 33..296 169..401 190 26.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11877-PA 403 GK11877-PA 1..403 1..401 1446 66.6 Plus
Dwil\GK17091-PA 311 GK17091-PA 26..291 163..401 190 28.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16565-PA 401 GE16565-PA 1..401 1..401 1944 90 Plus
Dyak\GE20060-PA 316 GE20060-PA 31..294 169..401 192 25.5 Plus