Clone GM23419 Report

Search the DGRC for GM23419

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:234
Well:19
Vector:pOT2
Associated Gene/TranscriptMlc-c-RA
Protein status:GM23419.pep: gold
Sequenced Size:822

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Mlc-c 2009-02-11 Manual selection by Sue Celniker

Clone Sequence Records

GM23419.complete Sequence

822 bp assembled on 2009-04-13

GenBank Submission: BT082023.1

> GM23419.complete
ATTTGCTTGCGTTTTGTTTCGACGTCGAATTCAATATTCAATATTTCGTG
TATTTTGTGTTGTTTTCCCTCAGATAGCTAAAAACAAATCGATATGGCAG
CTTATACCGAGGATCAGTTGGCTGAATTCCAGGAGGCCTTCAACCTGTTC
GACAACCGCGGAGATGGCAAAATTCAGCTGAGCCAGGTGGGCGAGTGCCT
GAGGGCCCTGGGCCAGAACCCCACCGAGTCGGATGTGAAGAAGTGCACCC
ACCAGCTGAAGCCCGACGAGCGCATCTCGTTCGAGGTGTTCCTGCCCATC
TATCAGGCGATCTCCAAGGCCCGCTCGGGCGATACGGCTGATGATTTCAT
CGAAGGACTGCGTCACTTCGACAAGGACGCCAGCGGTTATATCTCCTCCG
CCGAGCTGCGCCACCTGCTGACCACGCTGGGCGAGAAGCTCACCGACGAG
GAGGTCGAGCAGCTGCTGGCCAACATGGAGGACCAGCAGGGCAACATCAA
CTACGAGGAGTTCGTGCGCATGGTCATGAGCGGTTAGGATCAGACCGATT
CTAGCTGTTCAACTGTCCAGCGACACGACAATAGAAGCAACGCTATATCC
AACACAATACAACAGCAACACTAAACACACCTGCCAAGCTACACATAGAT
GAGCCGTTCATTCCGCCAGAAGTTCCAACTCCGTGATTCCAACTTAGCCA
TTCTTACCCCGGCATTAAAGCATTCAAAACCAAGGACAACGACCAAGGAT
ATCGAGATATAACAAATACAGGGGAAAGTGCTTAACACAAGCAGCTAATA
ACTGAAAAAAAAAAAAAAAAAA

GM23419.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc-c-RA 1349 Mlc-c-RA 47..863 1..815 3955 99.1 Plus
Mlc-c.a 1250 Mlc-c.a 97..790 124..815 3340 98.9 Plus
l(1)G0045-RA 3636 l(1)G0045-RA 67..163 97..1 485 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5512017..5512697 804..124 3390 99.9 Minus
chrX 22417052 chrX 5514828..5514924 97..1 485 100 Minus
chr2R 21145070 chr2R 8156510..8156601 367..458 190 80.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:25:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5619594..5620287 815..124 3330 99 Minus
X 23542271 X 5622416..5622512 97..1 485 100 Minus
2R 25286936 2R 12269291..12269382 367..458 190 80.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5627692..5628385 815..124 3340 98.9 Minus
X 23527363 X 5630514..5630610 97..1 485 100 Minus
2R 25260384 2R 12270490..12270581 367..458 190 80.4 Plus
X 23527363 X 5630350..5630378 124..96 145 100 Minus
Blast to na_te.dros performed on 2019-03-15 14:50:21 has no hits.

GM23419.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:51:01 Download gff for GM23419.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5512017..5512696 125..804 99 <- Minus
chrX 5514664..5514691 97..124 100 <- Minus
chrX 5514829..5514924 1..96 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:49:28 Download gff for GM23419.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc-c-RA 1..444 94..537 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:45:38 Download gff for GM23419.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc-c-RA 1..444 94..537 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:45:40 Download gff for GM23419.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc-c-RA 1..444 94..537 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:11:36 Download gff for GM23419.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc-c-RA 1..444 94..537 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-13 17:41:35 Download gff for GM23419.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc-c-RA 47..852 1..804 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:45:38 Download gff for GM23419.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc-c-RA 47..852 1..804 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:45:40 Download gff for GM23419.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc-c-RA 28..833 1..804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:11:36 Download gff for GM23419.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc-c-RA 28..833 1..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:51:01 Download gff for GM23419.complete
Subject Subject Range Query Range Percent Splice Strand
X 5619605..5620286 125..804 99 <- Minus
X 5622252..5622279 97..124 100 <- Minus
X 5622417..5622512 1..96 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:51:01 Download gff for GM23419.complete
Subject Subject Range Query Range Percent Splice Strand
X 5619605..5620286 125..804 99 <- Minus
X 5622252..5622279 97..124 100 <- Minus
X 5622417..5622512 1..96 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:51:01 Download gff for GM23419.complete
Subject Subject Range Query Range Percent Splice Strand
X 5619605..5620286 125..804 99 <- Minus
X 5622252..5622279 97..124 100 <- Minus
X 5622417..5622512 1..96 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:45:40 Download gff for GM23419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5513638..5514319 125..804 99 <- Minus
arm_X 5516285..5516312 97..124 100 <- Minus
arm_X 5516450..5516545 1..96 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:20:56 Download gff for GM23419.complete
Subject Subject Range Query Range Percent Splice Strand
X 5630515..5630610 1..96 100   Minus
X 5627703..5628384 125..804 99 <- Minus
X 5630350..5630377 97..124 100 <- Minus

GM23419.pep Sequence

Translation from 93 to 536

> GM23419.pep
MAAYTEDQLAEFQEAFNLFDNRGDGKIQLSQVGECLRALGQNPTESDVKK
CTHQLKPDERISFEVFLPIYQAISKARSGDTADDFIEGLRHFDKDASGYI
SSAELRHLLTTLGEKLTDEEVEQLLANMEDQQGNINYEEFVRMVMSG*

GM23419.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21286-PA 147 GF21286-PA 1..147 1..147 780 100 Plus
Dana\GF12835-PA 149 GF12835-PA 6..148 5..146 327 46.2 Plus
Dana\GF16772-PA 148 GF16772-PA 1..145 1..144 294 42.9 Plus
Dana\GF15287-PA 202 GF15287-PA 52..202 6..147 251 34.4 Plus
Dana\GF18698-PA 155 GF18698-PA 1..149 1..146 218 36.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18489-PA 147 GG18489-PA 1..147 1..147 780 100 Plus
Dere\GG20265-PA 149 GG20265-PA 6..148 5..146 327 46.2 Plus
Dere\GG11425-PA 148 GG11425-PA 1..145 1..144 269 40.1 Plus
Dere\GG24532-PA 193 GG24532-PA 43..193 6..147 225 32.5 Plus
Dere\GG21382-PA 182 GG21382-PA 36..176 5..144 221 35.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24922-PA 158 GH24922-PA 13..158 2..147 769 99.3 Plus
Dgri\GH13789-PA 158 GH13789-PA 5..155 4..144 286 43 Plus
Dgri\GH23405-PA 151 GH23405-PA 8..148 5..144 260 38.5 Plus
Dgri\GH21626-PA 155 GH21626-PA 1..149 1..146 211 36 Plus
Dgri\GH10976-PA 190 GH10976-PA 44..184 5..144 205 34.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc-c-PA 147 CG3201-PA 1..147 1..147 754 100 Plus
Mlc-c-PB 153 CG3201-PB 15..153 9..147 708 99.3 Plus
Cam-PD 149 CG8472-PD 6..148 5..146 326 46.2 Plus
Cam-PC 149 CG8472-PC 6..148 5..146 326 46.2 Plus
Cam-PE 149 CG8472-PE 6..148 5..146 326 46.2 Plus
Cam-PB 149 CG8472-PB 6..148 5..146 326 46.2 Plus
Cam-PA 149 CG8472-PA 6..148 5..146 326 46.2 Plus
Acam-PB 148 CG17769-PB 1..145 1..144 278 40.1 Plus
Acam-PA 148 CG17769-PA 1..145 1..144 278 40.1 Plus
CG17493-PD 182 CG17493-PD 36..176 5..144 229 35.7 Plus
CG17493-PC 182 CG17493-PC 36..176 5..144 229 35.7 Plus
CG17493-PB 182 CG17493-PB 36..176 5..144 229 35.7 Plus
Mlc1-PD 155 CG5596-PD 1..149 1..146 226 37.3 Plus
Mlc1-PB 155 CG5596-PB 1..149 1..146 226 37.3 Plus
CG17237-PA 192 CG17237-PA 42..192 6..147 220 33.8 Plus
CG17770-PA 164 CG17770-PA 21..161 5..144 211 32.2 Plus
Mlc1-PA 155 CG5596-PA 1..144 1..141 210 36.6 Plus
azot-PA 148 CG11165-PA 14..145 14..144 203 31.8 Plus
CG31960-PA 148 CG31960-PA 16..145 16..144 201 34.1 Plus
CG11638-PA 387 CG11638-PA 207..352 5..141 201 34.2 Plus
sqh-PE 174 CG3595-PE 26..167 2..147 196 30.1 Plus
sqh-PD 174 CG3595-PD 26..167 2..147 196 30.1 Plus
sqh-PC 174 CG3595-PC 26..167 2..147 196 30.1 Plus
sqh-PB 174 CG3595-PB 26..167 2..147 196 30.1 Plus
sqh-PA 174 CG3595-PA 26..167 2..147 196 30.1 Plus
CG31802-PA 186 CG31802-PA 43..180 8..144 187 32.6 Plus
CG13898-PA 151 CG13898-PA 11..145 7..140 182 32.4 Plus
CG30378-PA 148 CG30378-PA 6..148 5..146 178 28.3 Plus
CG5024-PB 165 CG5024-PB 23..163 6..145 178 29.4 Plus
CG5024-PA 165 CG5024-PA 23..163 6..145 178 29.4 Plus
Eip63F-1-PC 181 CG15855-PC 20..181 4..145 169 27.8 Plus
Eip63F-1-PA 193 CG15855-PA 32..193 4..145 169 27.8 Plus
TpnC47D-PB 155 CG9073-PB 9..152 5..144 166 27.1 Plus
TpnC47D-PA 155 CG9073-PA 9..152 5..144 166 27.1 Plus
TpnC41C-PB 154 CG2981-PB 6..152 5..147 161 26.5 Plus
TpnC41C-PA 154 CG2981-PA 6..152 5..147 161 26.5 Plus
Eip63F-1-PD 166 CG15855-PD 9..166 8..145 161 27.8 Plus
CG34435-PA 299 CG34435-PA 65..201 27..146 159 27.7 Plus
Eip63F-1-PB 161 CG15855-PB 11..161 15..145 154 28.5 Plus
TpnC25D-PC 149 CG6514-PC 4..146 6..144 147 21.7 Plus
TpnC25D-PA 149 CG6514-PA 4..146 6..144 147 21.7 Plus
TpnC25D-PB 143 CG6514-PB 5..140 13..144 145 22.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21775-PA 153 GI21775-PA 15..153 9..147 732 99.3 Plus
Dmoj\GI20594-PA 149 GI20594-PA 6..148 5..146 327 46.2 Plus
Dmoj\GI14158-PA 159 GI14158-PA 9..157 8..146 271 41.6 Plus
Dmoj\GI10339-PA 149 GI10339-PA 6..146 5..144 270 41.5 Plus
Dmoj\GI10340-PA 150 GI10340-PA 4..147 2..144 257 39.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16470-PA 153 GL16470-PA 17..153 11..147 726 99.3 Plus
Dper\GL10814-PA 149 GL10814-PA 6..148 5..146 327 46.2 Plus
Dper\GL21535-PA 148 GL21535-PA 1..145 1..144 280 41.5 Plus
Dper\GL21536-PA 148 GL21536-PA 1..145 1..144 268 40.8 Plus
Dper\GL19406-PA 161 GL19406-PA 11..161 5..146 239 35.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22593-PA 153 GA22593-PA 17..153 11..147 726 99.3 Plus
Dpse\GA24499-PA 149 GA24499-PA 6..148 5..146 327 46.2 Plus
Dpse\GA14657-PA 148 GA14657-PA 1..145 1..144 276 40.8 Plus
Dpse\GA26322-PA 148 GA26322-PA 1..145 1..144 268 40.8 Plus
Dpse\GA14407-PA 161 GA14407-PA 11..161 5..146 242 35.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12637-PA 147 GM12637-PA 1..147 1..147 780 100 Plus
Dsec\GM21351-PA 149 GM21351-PA 6..148 5..146 327 46.2 Plus
Dsec\GM10265-PA 148 GM10265-PA 1..145 1..144 276 40.1 Plus
Dsec\GM18240-PA 191 GM18240-PA 43..191 8..147 229 34.2 Plus
Dsec\Mlc1-PA 155 GM16330-PA 1..149 1..146 219 37.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16253-PA 147 GD16253-PA 1..147 1..147 780 100 Plus
Dsim\GD10849-PA 149 GD10849-PA 6..148 5..146 327 46.2 Plus
Dsim\GD21235-PA 148 GD21235-PA 1..145 1..144 276 40.1 Plus
Dsim\Mlc1-PA 155 GD18066-PA 1..149 1..146 219 37.3 Plus
Dsim\GD21234-PA 164 GD21234-PA 21..161 5..144 212 32.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16948-PA 146 GJ16948-PA 1..146 2..147 774 100 Plus
Dvir\GJ22292-PA 168 GJ22292-PA 9..155 8..146 295 42.9 Plus
Dvir\GJ10193-PA 151 GJ10193-PA 9..148 6..144 256 38 Plus
Dvir\GJ20779-PA 113 GJ20779-PA 1..112 36..146 235 43.9 Plus
Dvir\GJ16950-PA 271 GJ16950-PA 29..166 8..137 229 37 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24961-PA 619 GK24961-PA 480..619 8..147 739 97.9 Plus
Dwil\GK22183-PA 149 GK22183-PA 6..148 5..146 327 46.2 Plus
Dwil\GK18988-PA 148 GK18988-PA 1..145 1..144 293 42.2 Plus
Dwil\GK14989-PA 174 GK14989-PA 27..174 8..147 256 36.5 Plus
Dwil\GK18987-PA 167 GK18987-PA 25..164 6..144 217 32.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16807-PA 147 GE16807-PA 1..147 1..147 780 100 Plus
Dyak\Cam-PA 149 GE12425-PA 6..148 5..146 327 46.2 Plus
Dyak\GE23620-PA 148 GE23620-PA 1..145 1..144 272 40.1 Plus
Dyak\GE15137-PA 198 GE15137-PA 48..198 6..147 228 32.5 Plus
Dyak\Mlc1-PA 155 GE10549-PA 1..149 1..146 218 37.3 Plus

GM23419.hyp Sequence

Translation from 93 to 536

> GM23419.hyp
MAAYTEDQLAEFQEAFNLFDNRGDGKIQLSQVGECLRALGQNPTESDVKK
CTHQLKPDERISFEVFLPIYQAISKARSGDTADDFIEGLRHFDKDASGYI
SSAELRHLLTTLGEKLTDEEVEQLLANMEDQQGNINYEEFVRMVMSG*

GM23419.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc-c-PA 147 CG3201-PA 1..147 1..147 754 100 Plus
Mlc-c-PB 153 CG3201-PB 15..153 9..147 708 99.3 Plus
Cam-PD 149 CG8472-PD 6..148 5..146 326 46.2 Plus
Cam-PC 149 CG8472-PC 6..148 5..146 326 46.2 Plus
Cam-PE 149 CG8472-PE 6..148 5..146 326 46.2 Plus