Clone GM23845 Report

Search the DGRC for GM23845

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:238
Well:45
Vector:pOT2
Associated Gene/TranscriptCG11671-RA
Protein status:GM23845.pep: gold
Preliminary Size:216
Sequenced Size:638

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11671 2002-01-01 Sim4 clustering to Release 2
CG11671 2002-05-18 Blastp of sequenced clone
CG11671 2003-01-01 Sim4 clustering to Release 3
CG11671 2008-04-29 Release 5.5 accounting
CG11671 2008-08-15 Release 5.9 accounting
CG11671 2008-12-18 5.12 accounting

Clone Sequence Records

GM23845.complete Sequence

638 bp (638 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118861

> GM23845.complete
CTGATAACGAAATAACAACGTGATTGTACTCAGTTGTTAGAAAGATCGTC
ACCGGGAAAGAAGTAAAACTTTGTAACGGAAATATACATAAATTGAAAAT
ATGGATTCAGCCATCTCAGAGATAATCAATGCCCTGGCTATACTGGCCGA
CGATAAAAATATCCAGTTGACCATCAAGGAGGCCGGCAAGGGAGCTGCAA
TTTGTGCTGGCGCTGCGCTGATCGGAGGACTACTGCTGGGCCCCCGGGGA
CTGGCACTGGGCGGGGCCATCGGTGGTCTCACCGCCTACGGACTTACGGA
GGGAAATTTCAAATCTCTAAGTGAGGTCATTTTGAACGATTTGACGGAGA
GTCAGCGTCGAGAACTGGAGCAGCACGTGATCAGGGCCATATCCGAAGTT
AGAAATGTACGCGTTCGAGATGTCGCAAGACTAATACTAAATAACCGGCA
TGTGCAAGAGGTTGCACTCGAAGCAGTCAAGTCCTATATCACTGATCGTA
TGGGAATGACCATCGTTGATTAGGCATTAATAGAAATATTTTTTAAACTA
TATTTCTCGATGATTAATGCTATAACACAGAATTTTGCCTGCAACATAAA
TAAATTGTTGGCGCACTGAAAAAAAAAAAAAAAAAAAA

GM23845.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11671.a 1120 CG11671.a 498..1117 1..620 3100 100 Plus
CG11671.b 847 CG11671.b 225..844 1..620 3100 100 Plus
CG11671-RA 872 CG11671-RA 225..844 1..620 3100 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4114317..4114633 302..618 1585 100 Plus
chr3R 27901430 chr3R 4113959..4114261 1..303 1515 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:25:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8288297..8288615 302..620 1595 100 Plus
3R 32079331 3R 8287939..8288241 1..303 1515 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8029128..8029446 302..620 1595 100 Plus
3R 31820162 3R 8028770..8029072 1..303 1515 100 Plus
Blast to na_te.dros performed 2019-03-16 01:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
hopper2 1593 hopper2 HOPPER2 1593bp 792..832 116..76 106 73.2 Minus

GM23845.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:54:30 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4113959..4114260 1..302 100 -> Plus
chr3R 4114318..4114633 303..618 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:10:13 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
CG11671-RA 1..423 101..523 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:43:00 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
CG11671-RA 1..423 101..523 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:11:00 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
CG11671-RA 1..423 101..523 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:31:52 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
CG11671-RA 1..423 101..523 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:49:46 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
CG11671-RA 1..423 101..523 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:53:00 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
CG11671-RA 1..618 1..618 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:43:00 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
CG11671-RA 1..618 1..618 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:11:00 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
CG11671-RA 64..681 1..618 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:31:52 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
CG11671-RA 1..618 1..618 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:49:46 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
CG11671-RA 64..681 1..618 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:54:30 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8287939..8288240 1..302 100 -> Plus
3R 8288298..8288613 303..618 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:54:30 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8287939..8288240 1..302 100 -> Plus
3R 8288298..8288613 303..618 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:54:30 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8287939..8288240 1..302 100 -> Plus
3R 8288298..8288613 303..618 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:11:00 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4113661..4113962 1..302 100 -> Plus
arm_3R 4114020..4114335 303..618 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:04:25 Download gff for GM23845.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8029129..8029444 303..618 100   Plus
3R 8028770..8029071 1..302 100 -> Plus

GM23845.hyp Sequence

Translation from 100 to 522

> GM23845.hyp
MDSAISEIINALAILADDKNIQLTIKEAGKGAAICAGAALIGGLLLGPRG
LALGGAIGGLTAYGLTEGNFKSLSEVILNDLTESQRRELEQHVIRAISEV
RNVRVRDVARLILNNRHVQEVALEAVKSYITDRMGMTIVD*

GM23845.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11671-PA 140 CG11671-PA 1..140 1..140 678 100 Plus
CG3740-PA 140 CG3740-PA 7..140 7..140 349 47.8 Plus

GM23845.pep Sequence

Translation from 100 to 522

> GM23845.pep
MDSAISEIINALAILADDKNIQLTIKEAGKGAAICAGAALIGGLLLGPRG
LALGGAIGGLTAYGLTEGNFKSLSEVILNDLTESQRRELEQHVIRAISEV
RNVRVRDVARLILNNRHVQEVALEAVKSYITDRMGMTIVD*

GM23845.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18336-PA 137 GF18336-PA 6..137 8..140 327 59.4 Plus
Dana\GF22009-PA 140 GF22009-PA 7..140 7..140 286 45.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24365-PA 218 GG24365-PA 83..218 5..140 399 79.4 Plus
Dere\GG12688-PA 140 GG12688-PA 7..140 7..140 304 47.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17570-PA 140 GH17570-PA 7..140 7..140 288 48.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11671-PA 140 CG11671-PA 1..140 1..140 678 100 Plus
CG3740-PA 140 CG3740-PA 7..140 7..140 349 47.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16036-PA 140 GI16036-PA 7..140 7..140 293 47.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23423-PA 140 GL23423-PA 7..140 7..140 366 61.2 Plus
Dper\GL14368-PA 140 GL14368-PA 7..140 7..140 289 46.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11134-PA 140 GA11134-PA 7..140 7..140 360 60.4 Plus
Dpse\GA17654-PA 140 GA17654-PA 7..140 7..140 289 46.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23716-PA 140 GM23716-PA 1..140 1..140 687 97.9 Plus
Dsec\GM18961-PA 140 GM18961-PA 7..140 7..140 298 47.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24633-PA 140 GD24633-PA 7..140 7..140 299 48.5 Plus
Dsim\GD18531-PA 110 GD18531-PA 1..92 1..92 290 95.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15545-PA 140 GJ15545-PA 7..140 7..140 293 48.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10098-PA 140 GK10098-PA 6..140 6..140 321 45.2 Plus
Dwil\GK10097-PA 140 GK10097-PA 7..140 7..140 311 49.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25861-PA 140 GE25861-PA 1..140 1..140 495 82.9 Plus
Dyak\GE16519-PA 140 GE16519-PA 7..140 7..140 360 47 Plus