BDGP Sequence Production Resources |
Search the DGRC for GM24554
Library: | GM |
Tissue Source: | Drosophila melanogaster ovary |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 245 |
Well: | 54 |
Vector: | pOT2 |
Associated Gene/Transcript | CG1620-RA |
Protein status: | GM24554.pep: gold |
Sequenced Size: | 2179 |
Gene | Date | Evidence |
---|---|---|
CG1620 | 2009-08-26 | Manual selection by Sue Celniker |
2179 bp assembled on 2010-01-08
GenBank Submission: BT120110.1
> GM24554.complete GCGCTCTGGCCGCTGCCACACTGTGTGTACGGAAAATGATGGAGTTCGGG AAATCGTCGGATCACTCCCAGCACAGCGCTTCCGAGGCGTCGGCGGACTC CGGCAGCCTGGCAAACAGCGATCTGGCCGTCACGCCCACCAAGCGGGAGC GCCGCAAGTCGCCGGCCACCAGTTCGGACAACAACAGCACCAGCGTCCAA CCGCCAATGTCGCCGTCGTCCTCGGTGGCGGACACCACCTTTGAGCCCAC CATCGACATGATGGTCAACGACTTTGACGACGAGGCCACGCTGAACGAGG AGGAGGCTCTGGCGGACATGGAGGCGCACAGTGCCGAGGACGAGATCGCC ACGCTGCGCGAGGAGAGCGAGATGCCCATCGAGGAGCTGCTGGCCAAATA TGGCGGGACAGCGGCTTCGCCGGCAATGAGCAGCTCGAACCGTTCCGGCA GCAGTTCACGACGTGCACGTAGGGCCACAAAGCGCCAGTACCAGGAACTG GACACGGAGATGGCTCACACGTCGACCTCCACTTCGAGCAGCACATCGCA ACTGGAGAAACACGACGGCATAGACCAGGAGGAGGAACCCAAGGAGGAGG CCGATAAGCTAGCATCACCCCCAGAATCAGGAGAAGCTTCGTCCGTGGAC ACGGAGGATGCGCAAAAGTATGAGGGGATCAAGAAGCAGCATCGCTCACA TTTGCTGGACCTGTATCCAGATGAATCCTTCGTCGATCTGGCGCCCACAT GCGGAGAGGAGACGGAAAGATTCACTCCACTGCAAACACTGTTCGATGAA GTGGAGGCCGAGGAGGAGGAGGAAAGCGAATCCGAGTTGGACGATGCTCG GAAGATAATAATGGTGGGTCACGACTATCAGGCTGAGATCCCAGAGGGGC TGTCGCAATATGGCGATATATTGCCATATGAGAACGAGGATCAGTTGATC TGGGAGCCCAGCCAAGTCAGCGAGCGCGAGGTGGAGGAATATCTGGCCAA GATACAGGAAACCCGATCGATAGTTCCGCCGGATGACGGGTCAGAGACTA CGGCGGGCGAGGAAGGCGCAGCTACAGGTGCTACTATCGAACCGCCGGCT CCCATTACAGCTCCAGCCACGCCTCCGAGGGCTCCGCTTGCGACAAGTGG CGCTGGCGATCAGGAGCTGGTGGTAAAGGATAATGAGCAGGCGCTCCATC TGCTTGTCCAGTGCGGTTACGACTTCAAAGAAGCCCTACGACGCAAGCGC ATGAACGTCCTGCCTCTCACTGATACCATGAGCAGCTGGTCCGAGGACGA GTGCCTAAAGTTCGAGGAGGGCATTCAGCGGTTTGGCAAGGACTTCTATC AGATACGTCAAAACCAGGTGCGCACTAGAACCATGCGCGAGCTGGTCCAT TTCTACTATCTGTGGAAGAAGAGTGAGCGCCGGGATCAGAGCTTTGCTTT AAACGACACCATCGATCACATGGATGTTTTCATCAACGAGGCGGGCGGTG GCAACGGAAGTGGTAATGGAAATGGTGCCGGGATCGTATCGGGCACCGCT AACAGTAATGGTAGCTGCTCACCGCATAGCAGCAATGGTCACAGCAATGG GGATTTGTCTGCCCTGGAGAAGGATACCATCGCCAGTCCTCGAAAACCCG CCTCTAAGAGCTATTCTATTATGACCGGGAGTCAGGCGGTAGGTAATCCT TCCGGGGGGAACCGAAAGCGATGCTCATCCGCATCTCTGCCCCTGGAGGA CGAGGACAACAACGTCGAGGAAGAACCCAGCCTGTCCACAGTGTAAACGA TATCTCTATCACAATCACCATCATCATTATCATAACCGAGCGCAGGCGCT TTCGATTCGGTTGGGCCAGGCGATGTATTTGCAGGGCGCTTCATTACCAT TACCACTCACTATAAATATGCATACTGTACGTGTAGTATATACCATATGT CTAAACATATATATTCCAGATTCTTAAATCGACATCTCTCATAACCCGTA AAGAATTTCTCTATTGTTAAGTGTGCGATTCGTCTATTTGTTACATGTGC GTGTGGATTCCGGAACCAAGTACTTATCGCTTATATATACAATATATTTT CGCTCAATCCTTGAGTTTCGTTGAATGTCAATAAATGTAATATGTATATC TGTAAAGTCAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1620-RA | 2529 | CG1620-RA | 171..2331 | 1..2161 | 10775 | 99.9 | Plus |
CG1620-RB | 2439 | CG1620-RB | 171..1539 | 1..1369 | 6830 | 99.9 | Plus |
CG1620-RB | 2439 | CG1620-RB | 1603..2399 | 1365..2161 | 3970 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 3381358..3382152 | 2159..1365 | 3960 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 3382878..3383648 | 771..1 | 3855 | 100 | Minus |
chr2R | 21145070 | chr2R | 3382216..3382813 | 1369..772 | 2990 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 7494004..7494800 | 2161..1365 | 3970 | 99.9 | Minus |
2R | 25286936 | 2R | 7495526..7496296 | 771..1 | 3840 | 99.9 | Minus |
2R | 25286936 | 2R | 7494864..7495461 | 1369..772 | 2990 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 7495203..7495999 | 2161..1365 | 3970 | 99.8 | Minus |
2R | 25260384 | 2R | 7496725..7497495 | 771..1 | 3840 | 99.8 | Minus |
2R | 25260384 | 2R | 7496063..7496660 | 1369..772 | 2990 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3381358..3382149 | 1368..2159 | 95 | <- | Minus |
chr2R | 3382218..3382813 | 772..1367 | 100 | <- | Minus |
chr2R | 3382878..3383648 | 1..771 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RA | 1..1761 | 36..1796 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RA | 1..1761 | 36..1796 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RA | 1..1761 | 36..1796 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RA | 1..1761 | 36..1796 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RA | 171..2329 | 1..2159 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RA | 171..2329 | 1..2159 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RA | 171..2329 | 1..2159 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1620-RA | 171..2329 | 1..2159 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7494006..7494797 | 1368..2159 | 99 | <- | Minus |
2R | 7494866..7495461 | 772..1367 | 100 | <- | Minus |
2R | 7495526..7496296 | 1..771 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7494006..7494797 | 1368..2159 | 99 | <- | Minus |
2R | 7494866..7495461 | 772..1367 | 100 | <- | Minus |
2R | 7495526..7496296 | 1..771 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7494006..7494797 | 1368..2159 | 99 | <- | Minus |
2R | 7494866..7495461 | 772..1367 | 100 | <- | Minus |
2R | 7495526..7496296 | 1..771 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3381511..3382302 | 1368..2159 | 99 | <- | Minus |
arm_2R | 3382371..3382966 | 772..1367 | 100 | <- | Minus |
arm_2R | 3383031..3383801 | 1..771 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7495205..7495996 | 1368..2159 | 99 | <- | Minus |
2R | 7496065..7496660 | 772..1367 | 100 | <- | Minus |
2R | 7496725..7497495 | 1..771 | 99 | Minus |
Translation from 2 to 1795
> GM24554.hyp ALAAATLCVRKMMEFGKSSDHSQHSASEASADSGSLANSDLAVTPTKRER RKSPATSSDNNSTSVQPPMSPSSSVADTTFEPTIDMMVNDFDDEATLNEE EALADMEAHSAEDEIATLREESEMPIEELLAKYGGTAASPAMSSSNRSGS SSRRARRATKRQYQELDTEMAHTSTSTSSSTSQLEKHDGIDQEEEPKEEA DKLASPPESGEASSVDTEDAQKYEGIKKQHRSHLLDLYPDESFVDLAPTC GEETERFTPLQTLFDEVEAEEEEESESELDDARKIIMVGHDYQAEIPEGL SQYGDILPYENEDQLIWEPSQVSEREVEEYLAKIQETRSIVPPDDGSETT AGEEGAATGATIEPPAPITAPATPPRAPLATSGAGDQELVVKDNEQALHL LVQCGYDFKEALRRKRMNVLPLTDTMSSWSEDECLKFEEGIQRFGKDFYQ IRQNQVRTRTMRELVHFYYLWKKSERRDQSFALNDTIDHMDVFINEAGGG NGSGNGNGAGIVSGTANSNGSCSPHSSNGHSNGDLSALEKDTIASPRKPA SKSYSIMTGSQAVGNPSGGNRKRCSSASLPLEDEDNNVEEEPSLSTV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1620-PC | 586 | CG1620-PC | 1..586 | 12..597 | 3010 | 100 | Plus |
CG1620-PA | 586 | CG1620-PA | 1..586 | 12..597 | 3010 | 100 | Plus |
CG1620-PB | 457 | CG1620-PB | 1..450 | 12..461 | 2278 | 99.1 | Plus |
MTA1-like-PB | 844 | CG2244-PB | 196..481 | 286..578 | 203 | 23.1 | Plus |
MTA1-like-PC | 853 | CG2244-PC | 205..490 | 286..578 | 203 | 23.1 | Plus |
Translation from 2 to 1795
> GM24554.pep ALAAATLCVRKMMEFGKSSDHSQHSASEASADSGSLANSDLAVTPTKRER RKSPATSSDNNSTSVQPPMSPSSSVADTTFEPTIDMMVNDFDDEATLNEE EALADMEAHSAEDEIATLREESEMPIEELLAKYGGTAASPAMSSSNRSGS SSRRARRATKRQYQELDTEMAHTSTSTSSSTSQLEKHDGIDQEEEPKEEA DKLASPPESGEASSVDTEDAQKYEGIKKQHRSHLLDLYPDESFVDLAPTC GEETERFTPLQTLFDEVEAEEEEESESELDDARKIIMVGHDYQAEIPEGL SQYGDILPYENEDQLIWEPSQVSEREVEEYLAKIQETRSIVPPDDGSETT AGEEGAATGATIEPPAPITAPATPPRAPLATSGAGDQELVVKDNEQALHL LVQCGYDFKEALRRKRMNVLPLTDTMSSWSEDECLKFEEGIQRFGKDFYQ IRQNQVRTRTMRELVHFYYLWKKSERRDQSFALNDTIDHMDVFINEAGGG NGSGNGNGAGIVSGTANSNGSCSPHSSNGHSNGDLSALEKDTIASPRKPA SKSYSIMTGSQAVGNPSGGNRKRCSSASLPLEDEDNNVEEEPSLSTV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13676-PA | 575 | GF13676-PA | 1..558 | 12..579 | 1795 | 74.5 | Plus |
Dana\GF17406-PA | 875 | GF17406-PA | 228..443 | 286..517 | 199 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10741-PA | 584 | GG10741-PA | 1..584 | 12..597 | 2450 | 92.8 | Plus |
Dere\GG10908-PA | 880 | GG10908-PA | 232..475 | 286..545 | 199 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20595-PA | 594 | GH20595-PA | 10..570 | 44..576 | 1297 | 56.9 | Plus |
Dgri\GH19193-PA | 890 | GH19193-PA | 240..489 | 286..535 | 180 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1620-PC | 586 | CG1620-PC | 1..586 | 12..597 | 3010 | 100 | Plus |
CG1620-PA | 586 | CG1620-PA | 1..586 | 12..597 | 3010 | 100 | Plus |
CG1620-PB | 457 | CG1620-PB | 1..450 | 12..461 | 2278 | 99.1 | Plus |
MTA1-like-PB | 844 | CG2244-PB | 196..481 | 286..578 | 203 | 23.1 | Plus |
MTA1-like-PC | 853 | CG2244-PC | 205..490 | 286..578 | 203 | 23.1 | Plus |
MTA1-like-PA | 880 | CG2244-PA | 232..517 | 286..578 | 203 | 23.1 | Plus |
MTA1-like-PD | 922 | CG2244-PD | 232..517 | 286..578 | 203 | 23.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19795-PA | 551 | GI19795-PA | 1..445 | 36..494 | 1188 | 56.6 | Plus |
Dmoj\GI24226-PA | 891 | GI24226-PA | 237..440 | 286..511 | 179 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20117-PA | 585 | GL20117-PA | 1..568 | 13..579 | 1698 | 67.2 | Plus |
Dper\GL23145-PA | 961 | GL23145-PA | 307..478 | 286..479 | 158 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24935-PA | 585 | GA24935-PA | 1..568 | 13..579 | 1700 | 67.2 | Plus |
Dpse\GA27157-PA | 895 | GA27157-PA | 241..495 | 286..537 | 167 | 23.9 | Plus |
Dpse\GA27157-PB | 859 | GA27157-PB | 205..459 | 286..537 | 166 | 23.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20787-PA | 273 | GM20787-PA | 56..273 | 380..597 | 1081 | 95.9 | Plus |
Dsec\GM10605-PA | 880 | GM10605-PA | 232..447 | 286..517 | 194 | 26.4 | Plus |
Dsec\GM25056-PA | 1957 | GM25056-PA | 237..316 | 397..477 | 167 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15307-PA | 192 | GD15307-PA | 1..181 | 12..192 | 894 | 97.2 | Plus |
Dsim\GD10249-PA | 137 | GD10249-PA | 1..137 | 461..597 | 632 | 95.6 | Plus |
Dsim\GD19594-PA | 880 | GD19594-PA | 232..447 | 286..517 | 194 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18450-PA | 586 | GJ18450-PA | 1..585 | 36..597 | 1275 | 58 | Plus |
Dvir\GJ10798-PA | 883 | GJ10798-PA | 232..482 | 286..535 | 189 | 27.1 | Plus |