Clone GM24554 Report

Search the DGRC for GM24554

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:245
Well:54
Vector:pOT2
Associated Gene/TranscriptCG1620-RA
Protein status:GM24554.pep: gold
Sequenced Size:2179

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1620 2009-08-26 Manual selection by Sue Celniker

Clone Sequence Records

GM24554.complete Sequence

2179 bp assembled on 2010-01-08

GenBank Submission: BT120110.1

> GM24554.complete
GCGCTCTGGCCGCTGCCACACTGTGTGTACGGAAAATGATGGAGTTCGGG
AAATCGTCGGATCACTCCCAGCACAGCGCTTCCGAGGCGTCGGCGGACTC
CGGCAGCCTGGCAAACAGCGATCTGGCCGTCACGCCCACCAAGCGGGAGC
GCCGCAAGTCGCCGGCCACCAGTTCGGACAACAACAGCACCAGCGTCCAA
CCGCCAATGTCGCCGTCGTCCTCGGTGGCGGACACCACCTTTGAGCCCAC
CATCGACATGATGGTCAACGACTTTGACGACGAGGCCACGCTGAACGAGG
AGGAGGCTCTGGCGGACATGGAGGCGCACAGTGCCGAGGACGAGATCGCC
ACGCTGCGCGAGGAGAGCGAGATGCCCATCGAGGAGCTGCTGGCCAAATA
TGGCGGGACAGCGGCTTCGCCGGCAATGAGCAGCTCGAACCGTTCCGGCA
GCAGTTCACGACGTGCACGTAGGGCCACAAAGCGCCAGTACCAGGAACTG
GACACGGAGATGGCTCACACGTCGACCTCCACTTCGAGCAGCACATCGCA
ACTGGAGAAACACGACGGCATAGACCAGGAGGAGGAACCCAAGGAGGAGG
CCGATAAGCTAGCATCACCCCCAGAATCAGGAGAAGCTTCGTCCGTGGAC
ACGGAGGATGCGCAAAAGTATGAGGGGATCAAGAAGCAGCATCGCTCACA
TTTGCTGGACCTGTATCCAGATGAATCCTTCGTCGATCTGGCGCCCACAT
GCGGAGAGGAGACGGAAAGATTCACTCCACTGCAAACACTGTTCGATGAA
GTGGAGGCCGAGGAGGAGGAGGAAAGCGAATCCGAGTTGGACGATGCTCG
GAAGATAATAATGGTGGGTCACGACTATCAGGCTGAGATCCCAGAGGGGC
TGTCGCAATATGGCGATATATTGCCATATGAGAACGAGGATCAGTTGATC
TGGGAGCCCAGCCAAGTCAGCGAGCGCGAGGTGGAGGAATATCTGGCCAA
GATACAGGAAACCCGATCGATAGTTCCGCCGGATGACGGGTCAGAGACTA
CGGCGGGCGAGGAAGGCGCAGCTACAGGTGCTACTATCGAACCGCCGGCT
CCCATTACAGCTCCAGCCACGCCTCCGAGGGCTCCGCTTGCGACAAGTGG
CGCTGGCGATCAGGAGCTGGTGGTAAAGGATAATGAGCAGGCGCTCCATC
TGCTTGTCCAGTGCGGTTACGACTTCAAAGAAGCCCTACGACGCAAGCGC
ATGAACGTCCTGCCTCTCACTGATACCATGAGCAGCTGGTCCGAGGACGA
GTGCCTAAAGTTCGAGGAGGGCATTCAGCGGTTTGGCAAGGACTTCTATC
AGATACGTCAAAACCAGGTGCGCACTAGAACCATGCGCGAGCTGGTCCAT
TTCTACTATCTGTGGAAGAAGAGTGAGCGCCGGGATCAGAGCTTTGCTTT
AAACGACACCATCGATCACATGGATGTTTTCATCAACGAGGCGGGCGGTG
GCAACGGAAGTGGTAATGGAAATGGTGCCGGGATCGTATCGGGCACCGCT
AACAGTAATGGTAGCTGCTCACCGCATAGCAGCAATGGTCACAGCAATGG
GGATTTGTCTGCCCTGGAGAAGGATACCATCGCCAGTCCTCGAAAACCCG
CCTCTAAGAGCTATTCTATTATGACCGGGAGTCAGGCGGTAGGTAATCCT
TCCGGGGGGAACCGAAAGCGATGCTCATCCGCATCTCTGCCCCTGGAGGA
CGAGGACAACAACGTCGAGGAAGAACCCAGCCTGTCCACAGTGTAAACGA
TATCTCTATCACAATCACCATCATCATTATCATAACCGAGCGCAGGCGCT
TTCGATTCGGTTGGGCCAGGCGATGTATTTGCAGGGCGCTTCATTACCAT
TACCACTCACTATAAATATGCATACTGTACGTGTAGTATATACCATATGT
CTAAACATATATATTCCAGATTCTTAAATCGACATCTCTCATAACCCGTA
AAGAATTTCTCTATTGTTAAGTGTGCGATTCGTCTATTTGTTACATGTGC
GTGTGGATTCCGGAACCAAGTACTTATCGCTTATATATACAATATATTTT
CGCTCAATCCTTGAGTTTCGTTGAATGTCAATAAATGTAATATGTATATC
TGTAAAGTCAAAAAAAAAAAAAAAAAAAA

GM24554.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1620-RA 2529 CG1620-RA 171..2331 1..2161 10775 99.9 Plus
CG1620-RB 2439 CG1620-RB 171..1539 1..1369 6830 99.9 Plus
CG1620-RB 2439 CG1620-RB 1603..2399 1365..2161 3970 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3381358..3382152 2159..1365 3960 99.9 Minus
chr2R 21145070 chr2R 3382878..3383648 771..1 3855 100 Minus
chr2R 21145070 chr2R 3382216..3382813 1369..772 2990 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:25:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7494004..7494800 2161..1365 3970 99.9 Minus
2R 25286936 2R 7495526..7496296 771..1 3840 99.9 Minus
2R 25286936 2R 7494864..7495461 1369..772 2990 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7495203..7495999 2161..1365 3970 99.8 Minus
2R 25260384 2R 7496725..7497495 771..1 3840 99.8 Minus
2R 25260384 2R 7496063..7496660 1369..772 2990 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:13:43 has no hits.

GM24554.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:14:27 Download gff for GM24554.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3381358..3382149 1368..2159 95 <- Minus
chr2R 3382218..3382813 772..1367 100 <- Minus
chr2R 3382878..3383648 1..771 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-08 11:04:10 Download gff for GM24554.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 1..1761 36..1796 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:52:08 Download gff for GM24554.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 1..1761 36..1796 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:41:06 Download gff for GM24554.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 1..1761 36..1796 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:46:51 Download gff for GM24554.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 1..1761 36..1796 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-08 11:04:10 Download gff for GM24554.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 171..2329 1..2159 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:52:08 Download gff for GM24554.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 171..2329 1..2159 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:41:06 Download gff for GM24554.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 171..2329 1..2159 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:51 Download gff for GM24554.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 171..2329 1..2159 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:14:27 Download gff for GM24554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7494006..7494797 1368..2159 99 <- Minus
2R 7494866..7495461 772..1367 100 <- Minus
2R 7495526..7496296 1..771 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:14:27 Download gff for GM24554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7494006..7494797 1368..2159 99 <- Minus
2R 7494866..7495461 772..1367 100 <- Minus
2R 7495526..7496296 1..771 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:14:27 Download gff for GM24554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7494006..7494797 1368..2159 99 <- Minus
2R 7494866..7495461 772..1367 100 <- Minus
2R 7495526..7496296 1..771 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:41:06 Download gff for GM24554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3381511..3382302 1368..2159 99 <- Minus
arm_2R 3382371..3382966 772..1367 100 <- Minus
arm_2R 3383031..3383801 1..771 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:28:17 Download gff for GM24554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7495205..7495996 1368..2159 99 <- Minus
2R 7496065..7496660 772..1367 100 <- Minus
2R 7496725..7497495 1..771 99   Minus

GM24554.hyp Sequence

Translation from 2 to 1795

> GM24554.hyp
ALAAATLCVRKMMEFGKSSDHSQHSASEASADSGSLANSDLAVTPTKRER
RKSPATSSDNNSTSVQPPMSPSSSVADTTFEPTIDMMVNDFDDEATLNEE
EALADMEAHSAEDEIATLREESEMPIEELLAKYGGTAASPAMSSSNRSGS
SSRRARRATKRQYQELDTEMAHTSTSTSSSTSQLEKHDGIDQEEEPKEEA
DKLASPPESGEASSVDTEDAQKYEGIKKQHRSHLLDLYPDESFVDLAPTC
GEETERFTPLQTLFDEVEAEEEEESESELDDARKIIMVGHDYQAEIPEGL
SQYGDILPYENEDQLIWEPSQVSEREVEEYLAKIQETRSIVPPDDGSETT
AGEEGAATGATIEPPAPITAPATPPRAPLATSGAGDQELVVKDNEQALHL
LVQCGYDFKEALRRKRMNVLPLTDTMSSWSEDECLKFEEGIQRFGKDFYQ
IRQNQVRTRTMRELVHFYYLWKKSERRDQSFALNDTIDHMDVFINEAGGG
NGSGNGNGAGIVSGTANSNGSCSPHSSNGHSNGDLSALEKDTIASPRKPA
SKSYSIMTGSQAVGNPSGGNRKRCSSASLPLEDEDNNVEEEPSLSTV*

GM24554.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1620-PC 586 CG1620-PC 1..586 12..597 3010 100 Plus
CG1620-PA 586 CG1620-PA 1..586 12..597 3010 100 Plus
CG1620-PB 457 CG1620-PB 1..450 12..461 2278 99.1 Plus
MTA1-like-PB 844 CG2244-PB 196..481 286..578 203 23.1 Plus
MTA1-like-PC 853 CG2244-PC 205..490 286..578 203 23.1 Plus

GM24554.pep Sequence

Translation from 2 to 1795

> GM24554.pep
ALAAATLCVRKMMEFGKSSDHSQHSASEASADSGSLANSDLAVTPTKRER
RKSPATSSDNNSTSVQPPMSPSSSVADTTFEPTIDMMVNDFDDEATLNEE
EALADMEAHSAEDEIATLREESEMPIEELLAKYGGTAASPAMSSSNRSGS
SSRRARRATKRQYQELDTEMAHTSTSTSSSTSQLEKHDGIDQEEEPKEEA
DKLASPPESGEASSVDTEDAQKYEGIKKQHRSHLLDLYPDESFVDLAPTC
GEETERFTPLQTLFDEVEAEEEEESESELDDARKIIMVGHDYQAEIPEGL
SQYGDILPYENEDQLIWEPSQVSEREVEEYLAKIQETRSIVPPDDGSETT
AGEEGAATGATIEPPAPITAPATPPRAPLATSGAGDQELVVKDNEQALHL
LVQCGYDFKEALRRKRMNVLPLTDTMSSWSEDECLKFEEGIQRFGKDFYQ
IRQNQVRTRTMRELVHFYYLWKKSERRDQSFALNDTIDHMDVFINEAGGG
NGSGNGNGAGIVSGTANSNGSCSPHSSNGHSNGDLSALEKDTIASPRKPA
SKSYSIMTGSQAVGNPSGGNRKRCSSASLPLEDEDNNVEEEPSLSTV*

GM24554.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13676-PA 575 GF13676-PA 1..558 12..579 1795 74.5 Plus
Dana\GF17406-PA 875 GF17406-PA 228..443 286..517 199 26.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10741-PA 584 GG10741-PA 1..584 12..597 2450 92.8 Plus
Dere\GG10908-PA 880 GG10908-PA 232..475 286..545 199 25.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20595-PA 594 GH20595-PA 10..570 44..576 1297 56.9 Plus
Dgri\GH19193-PA 890 GH19193-PA 240..489 286..535 180 27.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1620-PC 586 CG1620-PC 1..586 12..597 3010 100 Plus
CG1620-PA 586 CG1620-PA 1..586 12..597 3010 100 Plus
CG1620-PB 457 CG1620-PB 1..450 12..461 2278 99.1 Plus
MTA1-like-PB 844 CG2244-PB 196..481 286..578 203 23.1 Plus
MTA1-like-PC 853 CG2244-PC 205..490 286..578 203 23.1 Plus
MTA1-like-PA 880 CG2244-PA 232..517 286..578 203 23.1 Plus
MTA1-like-PD 922 CG2244-PD 232..517 286..578 203 23.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19795-PA 551 GI19795-PA 1..445 36..494 1188 56.6 Plus
Dmoj\GI24226-PA 891 GI24226-PA 237..440 286..511 179 26.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20117-PA 585 GL20117-PA 1..568 13..579 1698 67.2 Plus
Dper\GL23145-PA 961 GL23145-PA 307..478 286..479 158 25.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24935-PA 585 GA24935-PA 1..568 13..579 1700 67.2 Plus
Dpse\GA27157-PA 895 GA27157-PA 241..495 286..537 167 23.9 Plus
Dpse\GA27157-PB 859 GA27157-PB 205..459 286..537 166 23.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20787-PA 273 GM20787-PA 56..273 380..597 1081 95.9 Plus
Dsec\GM10605-PA 880 GM10605-PA 232..447 286..517 194 26.4 Plus
Dsec\GM25056-PA 1957 GM25056-PA 237..316 397..477 167 39 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15307-PA 192 GD15307-PA 1..181 12..192 894 97.2 Plus
Dsim\GD10249-PA 137 GD10249-PA 1..137 461..597 632 95.6 Plus
Dsim\GD19594-PA 880 GD19594-PA 232..447 286..517 194 26.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18450-PA 586 GJ18450-PA 1..585 36..597 1275 58 Plus
Dvir\GJ10798-PA 883 GJ10798-PA 232..482 286..535 189 27.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10702-PA 571 GK10702-PA 6..545 22..581 1265 54.6 Plus
Dwil\GK10851-PA 895 GK10851-PA 242..488 286..543 171 24.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23937-PA 580 GE23937-PA 1..580 12..597 2458 90.1 Plus
Dyak\GE24151-PA 880 GE24151-PA 232..449 286..521 194 26.8 Plus