Clone GM25741 Report

Search the DGRC for GM25741

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:257
Well:41
Vector:pOT2
Associated Gene/TranscriptCG2453-RA
Protein status:GM25741.pep: gold
Preliminary Size:906
Sequenced Size:1188

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2453 2002-01-01 Sim4 clustering to Release 2
CG2453 2002-06-13 Blastp of sequenced clone
CG2453 2003-01-01 Sim4 clustering to Release 3
CG2453 2008-04-29 Release 5.5 accounting
CG2453 2008-08-15 Release 5.9 accounting
CG2453 2008-12-18 5.12 accounting

Clone Sequence Records

GM25741.complete Sequence

1188 bp (1188 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122141

> GM25741.complete
CGGAAAGCACCTAAGAATCAACAAAATGCAAACTACGAGGAGCACCCGGC
TGCTGTCCTTGGCCAGGAGATTCGTCCACACCCGAACGGCATCTCAATCG
GCCCAGAACTCCAAAGGAATGGCAAGTGGCGCGGAATCCATCTCCGGAAA
GGAGAAAACCACACATTTCGGCTTCCAAACAGTTCGGGAAAGTGAAAAGG
AACAAAAGGTTCACGAGGTCTTCGAACAGGTGGCCAACTCCTATGACGTG
ATGAACGATGCCATGTCCCTGGGCATCCATCGCGTGTGGAAGGATGTGTT
CGTCGAACGACTGGGTCCCACGCACGGTATGCGCTTGCTGGACATGGCTG
GCGGCACCGGGGACATCACCTTCCGCTACCTGCGTTATCTGAACAACCAG
CCGAATCCCCAACAGCGTCCCAGCCACGTCACTGTGTCGGACATCAACCA
GCACATGCTAAACGTGGGCGAGGAGCGGGCCAAGAGGCTGGGACTTACCA
CCGACCAGCTGTCCAACTGCACCGTCGCATGGCAGTGCGCCGATGCCGAG
AAGTTGCCCTTCCCGGACGCTAGCTTTACGGCCTACACTATTGCCTTTGG
CATCAGGAACTGCACACATGTGGATAAGGTTCTTTCTGAAGCGTATCGAG
TGCTGCAGCCGGGCGGACGATTCATGTGCCTGGAGTTCAGTCATCTGACG
AACGAAACGATGCAATGGCTATATGACCAGTACTCCTTCCAGGTGATTCC
GCCGATGGGCCAATTGCTGGCTGGTCAGTGGCAGGCGTACCAGTATCTCG
TTGAGAGCATCCGACGGTTTCCCAAGCAGGAGCAATTCAAGCAAATGATC
GAGCAGGCCGGATTCGATCAGGTGTCCTACGAGAACCTAACCTTCGGCGT
GGTCAGCATTCACTCCGGCTTCAAACTGTGACAGCCGAGGATGATATTTG
TTGTAAGCGATTAGGAAATCCTAAGACCATTTGATGGGGCTTAACTATAA
TCTATATTGTTGGTTTTTTGCGTTTTTTCATGCTGCTCACGTCGGGCAGG
TCATAAAGCATCGAATTAAACAAGCTCCTCTGGCGGCTTTTATTTCTGTA
TGTTTACATTTTGAGGTTTATGTAGCTCTTTGTCAAATATATGTACTTCA
TGTGCCAAAAGGCAAACCCAAAAAAAAAAAAAAAAAAA

GM25741.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-RA 1350 CG2453-RA 134..1305 1..1172 5845 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13083963..13084507 1169..625 2725 100 Minus
chrX 22417052 chrX 13084555..13084976 630..209 2110 100 Minus
chrX 22417052 chrX 13085034..13085242 209..1 1045 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:25:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13193091..13193638 1172..625 2725 99.8 Minus
X 23542271 X 13193686..13194107 630..209 2110 100 Minus
X 23542271 X 13194165..13194373 209..1 1045 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13201189..13201736 1172..625 2725 99.8 Minus
X 23527363 X 13201784..13202205 630..209 2110 100 Minus
X 23527363 X 13202263..13202471 209..1 1045 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:42:48 has no hits.

GM25741.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:43:27 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13083963..13084503 629..1169 100 <- Minus
chrX 13084557..13084975 210..628 100 <- Minus
chrX 13085034..13085242 1..209 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:10:25 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 1..906 26..931 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:21:45 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 1..906 26..931 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:02:41 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 1..906 26..931 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:12:33 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 1..906 26..931 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:12:55 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 1..906 26..931 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:48:01 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 1..1169 1..1169 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:21:44 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 1..1169 1..1169 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:02:41 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 1..1169 1..1169 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:12:33 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 1..1169 1..1169 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:12:55 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 20..1188 1..1169 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:27 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
X 13193094..13193634 629..1169 99 <- Minus
X 13193688..13194106 210..628 100 <- Minus
X 13194165..13194373 1..209 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:27 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
X 13193094..13193634 629..1169 99 <- Minus
X 13193688..13194106 210..628 100 <- Minus
X 13194165..13194373 1..209 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:27 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
X 13193094..13193634 629..1169 99 <- Minus
X 13193688..13194106 210..628 100 <- Minus
X 13194165..13194373 1..209 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:02:41 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13088198..13088406 1..209 100   Minus
arm_X 13087127..13087667 629..1169 99 <- Minus
arm_X 13087721..13088139 210..628 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:15 Download gff for GM25741.complete
Subject Subject Range Query Range Percent Splice Strand
X 13201192..13201732 629..1169 99 <- Minus
X 13201786..13202204 210..628 100 <- Minus
X 13202263..13202471 1..209 100   Minus

GM25741.hyp Sequence

Translation from 0 to 930

> GM25741.hyp
GKHLRINKMQTTRSTRLLSLARRFVHTRTASQSAQNSKGMASGAESISGK
EKTTHFGFQTVRESEKEQKVHEVFEQVANSYDVMNDAMSLGIHRVWKDVF
VERLGPTHGMRLLDMAGGTGDITFRYLRYLNNQPNPQQRPSHVTVSDINQ
HMLNVGEERAKRLGLTTDQLSNCTVAWQCADAEKLPFPDASFTAYTIAFG
IRNCTHVDKVLSEAYRVLQPGGRFMCLEFSHLTNETMQWLYDQYSFQVIP
PMGQLLAGQWQAYQYLVESIRRFPKQEQFKQMIEQAGFDQVSYENLTFGV
VSIHSGFKL*

GM25741.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-PC 301 CG2453-PC 1..301 9..309 1580 100 Plus
CG2453-PB 301 CG2453-PB 1..301 9..309 1580 100 Plus
CG2453-PA 301 CG2453-PA 1..301 9..309 1580 100 Plus

GM25741.pep Sequence

Translation from 25 to 930

> GM25741.pep
MQTTRSTRLLSLARRFVHTRTASQSAQNSKGMASGAESISGKEKTTHFGF
QTVRESEKEQKVHEVFEQVANSYDVMNDAMSLGIHRVWKDVFVERLGPTH
GMRLLDMAGGTGDITFRYLRYLNNQPNPQQRPSHVTVSDINQHMLNVGEE
RAKRLGLTTDQLSNCTVAWQCADAEKLPFPDASFTAYTIAFGIRNCTHVD
KVLSEAYRVLQPGGRFMCLEFSHLTNETMQWLYDQYSFQVIPPMGQLLAG
QWQAYQYLVESIRRFPKQEQFKQMIEQAGFDQVSYENLTFGVVSIHSGFK
L*

GM25741.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20959-PA 302 GF20959-PA 1..302 1..301 1315 83.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19515-PA 305 GG19515-PA 1..305 1..301 1533 92.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24114-PA 282 GH24114-PA 1..282 1..301 1265 77.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-PC 301 CG2453-PC 1..301 1..301 1580 100 Plus
CG2453-PB 301 CG2453-PB 1..301 1..301 1580 100 Plus
CG2453-PA 301 CG2453-PA 1..301 1..301 1580 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16372-PA 296 GI16372-PA 1..296 1..301 1270 77.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15869-PA 305 GL15869-PA 1..305 1..301 1369 81.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15370-PA 305 GA15370-PA 1..305 1..301 1354 81.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11506-PA 301 GM11506-PA 1..301 1..301 1607 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15899-PA 85 GD15899-PA 1..85 217..301 460 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16746-PA 291 GJ16746-PA 31..291 41..301 1248 84.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16503-PA 306 GK16503-PA 24..306 20..301 1270 80.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16170-PA 305 GE16170-PA 1..305 1..301 1528 91.8 Plus