Clone GM29503 Report

Search the DGRC for GM29503

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:295
Well:3
Vector:pOT2
Associated Gene/TranscriptCG10623-RA
Protein status:GM29503.pep: gold
Preliminary Size:1114
Sequenced Size:1483

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10623 2002-01-01 Sim4 clustering to Release 2
CG10623 2002-05-18 Blastp of sequenced clone
CG10623 2003-01-01 Sim4 clustering to Release 3
CG10623 2008-04-29 Release 5.5 accounting
CG10623 2008-08-15 Release 5.9 accounting
CG10623 2008-12-18 5.12 accounting

Clone Sequence Records

GM29503.complete Sequence

1483 bp (1483 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118872

> GM29503.complete
AAGACATGGAAGTGAATCAAAAATGGAACTGGGACACCAAGCCAATTCTG
GTCAAATGCGGAGGATTCTCCTCGCAATTGGCCAAGAATGTCACCGAAAA
AGTGGACGGTGATCCACTGTGGGGATCGCGATTCGATGCCACCAATCCGG
AAGCTGTGATCCAAACACATCTGGACTTTCTCCGCAACGGAGCGGATATT
ATTCTAACCAACACGTATCAGTCCAGCGTCGAGGGATTCGTGAAGTACCT
GGGCGTGACCAGAGAACGAGGTGTGGAGTTGATCCAAAAGAGCGTTCAAC
TGGCCAAGCAGGCAAAGGAACAGTACCTTAGCGAAATCGGTTCTGAAGCG
GAGTCGGCTCTTCCACTGATCATGGGCTCAATAGGTCCATATGGCGCCTA
TCTCCACGATGGATCTGAGTACACCGGCAACTATGCGGACAAGATGTCCA
AGGAGGAGCTGAGGGCGTGGCACAAGACAAGAATTGAGATTTGTCTCGCA
GCTGGAGTGGATGGATTGGCCCTGGAAACACTTCCATGTCTGATGGAGGC
AGAGGCAGTCACCGAATTAGTACTGGACAACTTTCCGGATGCCAAATTCT
GGGTCTCCCTGCAGTGCATGGATGAAAAGCACATGGCTAGTGGAGAAAAC
TTCGCGGAGGCGGCTCTCTCCCTCTGGCGGTTGGTCCAAAGTCGGAAGGC
TGAAAACCGGCTCCTTGGGATCGGTCTGAACTGTGTAAACCCACTATTCG
TGACCCCTTTGCTATCATCGCTTACCAAAGTGGCCGGTTCGGATCGCATC
CCACTGGTGGTCTACAGCAATCGCGGCGAGATCTACGACGTCGAGCAGGG
AGATTGGACTGGAACCGGCGAGGAGGTGGTCAAGTTTGTGCCCGAGTGGA
TCCAGCTGGGAGTGCGCATCGTTGGCGGCTGTTGCCGGGTCTATCCGACG
GACGTGTTGGCGATCCGCAAGTACGTCGATGGCCTCAACATAAAGCCGTA
ATCGGGAGAGAACTCCGGTCACTGATAGCAGCCTTGTCGCTAATGCGAAA
GCTGTTTCGTGTGACTAGACCTAGACCTATTTAGTTTGCTAAATACATAT
ACGCGAGTACTAGATGTACCCAGATCAGATGGCTTCCTAATCAGCAGAGT
GTGGAAAAAAGCGTGGACGGCTGGCTGGGAGACAAACACAGATTAGGCGG
GCGGACCAAAGGTAAACAAGTGGGCTGGGGATATGGGCAGACGTTCGCCC
AACGACTGTTTTTGCCAACCTAGCTCAATTTTTGAGTCCAAATCAAAACA
ATTTTTCTATTCAATTATAACACAAAAACGTGCATTTGTCCTTTGAAAAA
CTTGCTGTGTTCTTAGCTTTCTATTCTTTATAGCCGGATTTAATTTCTTT
AAAATTAATATTGTTAAAAGTGTGTATGTATGTACTGATGTAAAGCAATA
AACTACAAAAATATCAAAAAAAAAAAAAAAAAA

GM29503.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10623-RA 1732 CG10623-RA 265..1732 1..1469 7260 99.7 Plus
CG10623.a 1562 CG10623.a 108..1562 1..1456 7195 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18954160..18955004 1465..620 4150 99.6 Minus
chr2L 23010047 chr2L 18955109..18955729 621..1 3090 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:26:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18955476..18956325 1470..620 4175 99.6 Minus
2L 23513712 2L 18956430..18957050 621..1 3090 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18955476..18956325 1470..620 4185 99.6 Minus
2L 23513712 2L 18956430..18957050 621..1 3090 99.8 Minus
Blast to na_te.dros performed 2019-03-16 02:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 5127..5253 1453..1325 126 58.5 Minus

GM29503.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:16:14 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18954160..18955003 621..1465 99 <- Minus
chr2L 18955110..18955729 1..620 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:10:32 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
CG10623-RA 1..996 6..1001 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:45:09 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
CG10623-RA 1..996 6..1001 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:17:56 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
CG10623-RA 1..996 6..1001 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:37:19 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
CG10623-RA 1..996 6..1001 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:02:24 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
CG10623-RA 1..996 6..1001 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:20:23 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
CG10623-RA 120..1583 1..1465 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:45:09 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
CG10623-RA 120..1583 1..1465 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:17:56 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
CG10623-RA 120..1583 1..1465 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:37:20 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
CG10623-RA 114..1577 1..1465 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:02:24 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
CG10623-RA 120..1583 1..1465 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:16:14 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18955481..18956324 621..1465 99 <- Minus
2L 18956431..18957050 1..620 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:16:14 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18955481..18956324 621..1465 99 <- Minus
2L 18956431..18957050 1..620 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:16:14 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18955481..18956324 621..1465 99 <- Minus
2L 18956431..18957050 1..620 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:17:56 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18955481..18956324 621..1465 99 <- Minus
arm_2L 18956431..18957050 1..620 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:09:44 Download gff for GM29503.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18955481..18956324 621..1465 99 <- Minus
2L 18956431..18957050 1..620 99   Minus

GM29503.hyp Sequence

Translation from 2 to 1000

> GM29503.hyp
DMEVNQKWNWDTKPILVKCGGFSSQLAKNVTEKVDGDPLWGSRFDATNPE
AVIQTHLDFLRNGADIILTNTYQSSVEGFVKYLGVTRERGVELIQKSVQL
AKQAKEQYLSEIGSEAESALPLIMGSIGPYGAYLHDGSEYTGNYADKMSK
EELRAWHKTRIEICLAAGVDGLALETLPCLMEAEAVTELVLDNFPDAKFW
VSLQCMDEKHMASGENFAEAALSLWRLVQSRKAENRLLGIGLNCVNPLFV
TPLLSSLTKVAGSDRIPLVVYSNRGEIYDVEQGDWTGTGEEVVKFVPEWI
QLGVRIVGGCCRVYPTDVLAIRKYVDGLNIKP*

GM29503.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10623-PC 331 CG10623-PC 1..331 2..332 1733 100 Plus
CG10623-PB 331 CG10623-PB 1..331 2..332 1733 100 Plus
CG10623-PA 331 CG10623-PA 1..331 2..332 1733 100 Plus
CG10621-PC 331 CG10621-PC 6..325 15..329 915 53.7 Plus
CG10621-PB 331 CG10621-PB 6..325 15..329 915 53.7 Plus

GM29503.pep Sequence

Translation from 5 to 1000

> GM29503.pep
MEVNQKWNWDTKPILVKCGGFSSQLAKNVTEKVDGDPLWGSRFDATNPEA
VIQTHLDFLRNGADIILTNTYQSSVEGFVKYLGVTRERGVELIQKSVQLA
KQAKEQYLSEIGSEAESALPLIMGSIGPYGAYLHDGSEYTGNYADKMSKE
ELRAWHKTRIEICLAAGVDGLALETLPCLMEAEAVTELVLDNFPDAKFWV
SLQCMDEKHMASGENFAEAALSLWRLVQSRKAENRLLGIGLNCVNPLFVT
PLLSSLTKVAGSDRIPLVVYSNRGEIYDVEQGDWTGTGEEVVKFVPEWIQ
LGVRIVGGCCRVYPTDVLAIRKYVDGLNIKP*

GM29503.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14646-PA 329 GF14646-PA 1..327 1..329 1347 75.8 Plus
Dana\GF14647-PA 331 GF14647-PA 6..325 14..328 953 55.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21670-PA 331 GG21670-PA 1..331 1..331 1634 90.9 Plus
Dere\GG21671-PA 331 GG21671-PA 6..325 14..328 925 53.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11601-PA 349 GH11601-PA 8..333 6..325 1165 64.7 Plus
Dgri\GH11602-PA 328 GH11602-PA 6..325 14..328 945 54.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10623-PC 331 CG10623-PC 1..331 1..331 1733 100 Plus
CG10623-PB 331 CG10623-PB 1..331 1..331 1733 100 Plus
CG10623-PA 331 CG10623-PA 1..331 1..331 1733 100 Plus
CG10621-PC 331 CG10621-PC 6..325 14..328 915 53.7 Plus
CG10621-PB 331 CG10621-PB 6..325 14..328 915 53.7 Plus
CG10621-PA 331 CG10621-PA 6..325 14..328 915 53.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17170-PA 349 GI17170-PA 8..339 8..331 1122 63 Plus
Dmoj\GI17171-PA 331 GI17171-PA 6..325 14..328 934 54.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19625-PA 349 GL19625-PA 6..337 2..329 1271 70.8 Plus
Dper\GL19626-PA 331 GL19626-PA 6..325 14..328 918 53.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10445-PA 349 GA10445-PA 6..337 2..329 1271 70.8 Plus
Dpse\GA10443-PA 331 GA10443-PA 6..325 14..328 918 53.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17049-PA 331 GM17049-PA 1..331 1..331 1734 97.9 Plus
Dsec\GM17050-PA 331 GM17050-PA 6..325 14..328 939 54.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21796-PA 331 GD21796-PA 1..331 1..331 1724 96.7 Plus
Dsim\GD21797-PA 331 GD21797-PA 6..325 14..328 933 54.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17676-PA 350 GJ17676-PA 8..339 8..331 1162 64.5 Plus
Dvir\GJ17677-PA 331 GJ17677-PA 6..325 14..328 935 54.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24683-PA 350 GK24683-PA 24..350 9..329 1145 62.8 Plus
Dwil\GK24684-PA 331 GK24684-PA 6..325 14..328 906 53.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12691-PA 331 GE12691-PA 1..331 1..331 1612 90.3 Plus
Dyak\GE12692-PA 331 GE12692-PA 6..325 14..328 928 54.3 Plus