Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GM30016.complete Sequence
830 bp (830 high quality bases) assembled on 2002-05-18
GenBank Submission: AY118873.1
> GM30016.complete
TTGACATGTGAGCATTTCAGATTGGTTAAAACTTTTATGATGCCACAAAT
TGCAAATAAACCAAATGAATCCATAATAAGAGTGCCGTTTGAGACGCCAC
GATTGGCCGAGATCGCCTACAAAGTCCTCGGTGTCGACCAGGAGCCGCGC
CGGAATTTCGTGAAAAAAACTTTGAGCCTGGAGAACGATGTTCTGGTTGT
GCACTTTCAGTCGGATCAAGTGAAGAGCCTGCGCACTGCCATCACCTCCT
TCTTTGAGTGCCTGCTCCTGTGCCAGGACACCATCAACCAGTTCGGAGAC
TCCAAGAAAGAGAAACTAATCCCCGAGAGCAACGACAATGCCGGAACACA
CTCCAGCTCCGACTCCCCATAGGGCGGTCTATGGTTTCGCCTTCTATATG
CTGTTCACGGTCCTCTTCCTCGTATACGTGACTTGGGCGCTGCTGCCAGT
GGAGTTTGGTCTGCACTCGTATCTGCCGGACAAGTATTTTGCCGTATTTG
TGCCTTTTCTGGTGCTGGTCTTCGCCTGGTTCTTTGCCTTCCTCATCTAT
CCTGCCATAAATCTATCGATGACAGTGGATGTTGATTCCATTGCCTCGGT
GGTGGATCCAAAGCTGGCACTGCCCAAGGGGACAGAGTTCACCTCCTGGT
CGCAGTTGCAAAAAGGCAAGGTCAGCCAGGATTCCGCATCAAAGAAGGCC
TCTCCAGTGAACTGCAACCTGTGCAGGACTTTCCACCAACCTGTGACACG
TGCACCTATTCCACCACTGCGTTTTCTGGACCTCCAGGAAGTAAATACAG
CGTATTATAACTAAAAAAAAAAAAAAAAAA
GM30016.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42498-RA | 814 | CG42498-RA | 1..814 | 1..814 | 4070 | 100 | Plus |
CG14550-RA | 814 | CG14550-RA | 1..814 | 1..814 | 4070 | 100 | Plus |
CG14543-RA | 754 | CG14543-RA | 678..754 | 818..742 | 385 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 21880335..21881075 | 812..72 | 3525 | 98.4 | Minus |
chr3R | 27901430 | chr3R | 21881139..21881209 | 71..1 | 355 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:26:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26057343..26058089 | 818..72 | 3735 | 100 | Minus |
3R | 32079331 | 3R | 26058153..26058223 | 71..1 | 355 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:35:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 25798174..25798920 | 818..72 | 3735 | 100 | Minus |
3R | 31820162 | 3R | 25798984..25799054 | 71..1 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 07:55:44 has no hits.
GM30016.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:56:35 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 21880335..21881075 | 72..812 | 98 | <- | Minus |
chr3R | 21881139..21881209 | 1..71 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:10:33 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14550-RA | 1..475 | 338..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:45:10 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14550-RA | 1..475 | 338..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:12:02 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14550-RA | 1..477 | 338..814 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:37:23 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14550-RA | 1..475 | 338..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:28 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14550-RA | 1..477 | 338..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:20:25 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14550-RA | 1..812 | 1..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:45:10 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42498-RA | 1..812 | 1..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:02 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42498-RA | 1..812 | 1..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:37:23 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14550-RA | 1..812 | 1..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:28 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14550-RA | 1..812 | 1..812 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:35 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26057349..26058089 | 72..812 | 100 | <- | Minus |
3R | 26058153..26058223 | 1..71 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:35 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26057349..26058089 | 72..812 | 100 | <- | Minus |
3R | 26058153..26058223 | 1..71 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:35 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26057349..26058089 | 72..812 | 100 | <- | Minus |
3R | 26058153..26058223 | 1..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:02 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21883071..21883811 | 72..812 | 100 | <- | Minus |
arm_3R | 21883875..21883945 | 1..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:09:46 Download gff for
GM30016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25798984..25799054 | 1..71 | 100 | | Minus |
3R | 25798180..25798920 | 72..812 | 100 | <- | Minus |
GM30016.pep2 Sequence
Translation from 36 to 371
> GM30016.pep2
MMPQIANKPNESIIRVPFETPRLAEIAYKVLGVDQEPRRNFVKKTLSLEN
DVLVVHFQSDQVKSLRTAITSFFECLLLCQDTINQFGDSKKEKLIPESND
NAGTHSSSDSP*
GM30016.pep2 Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42498-PA | 111 | CG42498-PA | 1..111 | 1..111 | 567 | 100 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK12800-PA | 97 | GK12800-PA | 1..96 | 2..110 | 380 | 68.8 | Plus |
GM30016.hyp Sequence
Translation from 337 to 811
> GM30016.hyp
MPEHTPAPTPHRAVYGFAFYMLFTVLFLVYVTWALLPVEFGLHSYLPDKY
FAVFVPFLVLVFAWFFAFLIYPAINLSMTVDVDSIASVVDPKLALPKGTE
FTSWSQLQKGKVSQDSASKKASPVNCNLCRTFHQPVTRAPIPPLRFLDLQ
EVNTAYYN
GM30016.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14550-PA | 158 | CG14550-PA | 1..158 | 1..158 | 841 | 100 | Plus |
GM30016.pep Sequence
Translation from 337 to 813
> GM30016.pep
MPEHTPAPTPHRAVYGFAFYMLFTVLFLVYVTWALLPVEFGLHSYLPDKY
FAVFVPFLVLVFAWFFAFLIYPAINLSMTVDVDSIASVVDPKLALPKGTE
FTSWSQLQKGKVSQDSASKKASPVNCNLCRTFHQPVTRAPIPPLRFLDLQ
EVNTAYYN*
GM30016.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF19935-PA | 157 | GF19935-PA | 1..157 | 1..158 | 690 | 81.6 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG12200-PA | 138 | GG12200-PA | 1..138 | 21..158 | 687 | 95.7 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH18141-PA | 158 | GH18141-PA | 1..158 | 1..158 | 571 | 69.2 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-P-PA | 158 | CG14550-PA | 1..158 | 1..158 | 841 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI22903-PA | 158 | GI22903-PA | 1..158 | 1..158 | 585 | 70.6 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL22012-PA | 157 | GL22012-PA | 1..157 | 1..158 | 678 | 80.4 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA27346-PA | 157 | GA27346-PA | 1..157 | 1..158 | 678 | 80.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM10198-PA | 138 | GM10198-PA | 1..138 | 21..158 | 698 | 96.4 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD18148-PA | 158 | GD18148-PA | 1..158 | 1..158 | 814 | 97.5 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ23315-PA | 157 | GJ23315-PA | 1..157 | 1..158 | 587 | 73 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE10644-PA | 158 | GE10644-PA | 1..158 | 1..158 | 790 | 94.9 | Plus |