Clone GM31575 Report

Search the DGRC for GM31575

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:315
Well:75
Vector:pOT2
Associated Gene/TranscriptMED28-RA
Protein status:GM31575.pep: gold
Preliminary Size:669
Sequenced Size:753

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5121 2002-01-01 Sim4 clustering to Release 2
CG5121 2002-05-18 Blastp of sequenced clone
CG5121 2003-01-01 Sim4 clustering to Release 3
MED28 2008-04-29 Release 5.5 accounting
MED28 2008-08-15 Release 5.9 accounting
MED28 2008-12-18 5.12 accounting

Clone Sequence Records

GM31575.complete Sequence

753 bp (753 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118876

> GM31575.complete
AAATTGTGTTGCTGATTTTTTTGTTGTTTCCGCTGAACCGGCGAAGTTAT
TTGTATTTAATTGTTTATTCGACTTCCAAGCTCACGAAATCATGGCCAGC
AATGAGTCCGGCGGCGGTAACCTGATGGACGAGTTCGAGGAGGCCTTCCA
GTCGTGCCTGCTGACGCTGACCAAACAGGAGCCGAATTCCGGGACAAACA
AGGAGGAAATCGATCTGGAGGTACAGAAGACCACAAATCGCTTCATAGAC
GTCGCCCGCCAAATGGAGGCGTTCTTCCTGCAGAAGCGTTTTCTCGTCTC
CACGCTGAAGCCCTACATGCTGATCAAGGACGAGAATCAGGACCTGAGCA
TCGAGATTCAACGCAAGGAGGCACTCCTGCAGAAGCACTACAATCGCCTG
GAGGAGTGGAAGGCCTGCCTATCGGACATCCAACAGGGCGTACACAGTCG
CCCCACGCCGCCCATCGGCTCTGGAATGCTGCAAGGTCCCGGTGGCGGAA
TGCCACCCATGGGAGGTACACCGCCGCGACCGGGAATGATGCCCGGAATG
CCTCCGGGTGCAATGCAACCCGGCGGACCCATGCAGCCCAGTCCACACAT
GCTGCAGGCACAGCAGATGCAGCAGCTCCGCATGATAAGCAGACAAATGC
CACCCAAATGAAACAGGAATGCATTCCTTTTAGCTTGTAATCTTGTATAG
ACCTGGATTAGTTAAATAAACCGATTTGATTATATAAAAAAAAAAAAAAA
AAA

GM31575.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
MED28-RA 743 MED28-RA 9..743 1..735 3675 100 Plus
MED28.a 724 MED28.a 69..724 80..735 3280 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21300140..21300874 1..735 3675 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:26:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25477011..25477746 1..736 3680 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25217842..25218577 1..736 3680 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:11:22 has no hits.

GM31575.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:12:13 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21300140..21300874 1..735 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:10:40 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 1..570 92..661 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:45:01 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 1..570 92..661 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:11:18 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 1..570 92..661 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:37:12 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 1..570 92..661 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:14:32 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 1..570 92..661 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:20:13 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 9..743 1..735 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:45:01 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 9..743 1..735 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:11:18 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 9..743 1..735 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:37:12 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 9..743 1..735 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:32 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 9..743 1..735 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:12:13 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25477011..25477745 1..735 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:12:13 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25477011..25477745 1..735 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:12:13 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25477011..25477745 1..735 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:11:18 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21302733..21303467 1..735 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:09:37 Download gff for GM31575.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25217842..25218576 1..735 100   Plus

GM31575.hyp Sequence

Translation from 0 to 660

> GM31575.hyp
NCVADFFVVSAEPAKLFVFNCLFDFQAHEIMASNESGGGNLMDEFEEAFQ
SCLLTLTKQEPNSGTNKEEIDLEVQKTTNRFIDVARQMEAFFLQKRFLVS
TLKPYMLIKDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQQGVHSR
PTPPIGSGMLQGPGGGMPPMGGTPPRPGMMPGMPPGAMQPGGPMQPSPHM
LQAQQMQQLRMISRQMPPK*

GM31575.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
MED28-PA 189 CG5121-PA 1..189 31..219 1001 100 Plus

GM31575.pep Sequence

Translation from 91 to 660

> GM31575.pep
MASNESGGGNLMDEFEEAFQSCLLTLTKQEPNSGTNKEEIDLEVQKTTNR
FIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQDLSIEIQRKEALLQKHY
NRLEEWKACLSDIQQGVHSRPTPPIGSGMLQGPGGGMPPMGGTPPRPGMM
PGMPPGAMQPGGPMQPSPHMLQAQQMQQLRMISRQMPPK*

GM31575.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16936-PA 190 GF16936-PA 1..131 1..131 677 96.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11406-PA 190 GG11406-PA 1..190 1..189 945 95.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19375-PA 183 GH19375-PA 5..162 3..163 641 84 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
MED28-PA 189 CG5121-PA 1..189 1..189 1001 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22577-PA 181 GI22577-PA 5..125 3..123 615 94.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12107-PA 190 GL12107-PA 1..190 1..189 758 80 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18674-PA 190 GA18674-PA 1..190 1..189 758 80 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10244-PA 190 GM10244-PA 1..190 1..189 964 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21218-PA 190 GD21218-PA 1..190 1..189 961 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10299-PA 187 GJ10299-PA 5..156 3..158 619 84.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11095-PA 178 GK11095-PA 1..135 1..139 606 84.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23602-PA 190 GE23602-PA 1..190 1..189 950 96.3 Plus