Clone HL01053 Report

Search the DGRC for HL01053

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:10
Well:53
Vector:pBS SK-
Associated Gene/Transcriptfon-RB
Protein status:HL01053.pep: gold
Preliminary Size:1962
Sequenced Size:1913

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15825 2001-01-01 Release 2 assignment
CG15825 2002-05-17 Blastp of sequenced clone
CG15825 2003-01-01 Sim4 clustering to Release 3
fon 2008-04-29 Release 5.5 accounting
fon 2008-08-15 Release 5.9 accounting
fon 2008-12-18 5.12 accounting

Clone Sequence Records

HL01053.complete Sequence

1913 bp (1913 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118481

> HL01053.complete
AACGTATTTTTCGGTCAAGAGCTAAAACGAATTGCCAAAATGAATAAGCT
GCTGATTTTGGCCCTTTGCCTGGGTGTGGTCTGTGGAGATTTCCAACAAA
GTTTGGGGAGAACCAAACGTGACAGTTTCCACTCTCGCCACTACAGTACC
CACGGACAAGCGGTGGAGCAGGCTCGCAAGAACGCCGGCTACGGTGGAGG
TTATAGCGGTAGCTTTGGAGCTGGCGTCGATGGCGCCTCCGCTCAGGTTG
ATGACTCTGCTCTGGGAAAACTCGAGAGCTCCTACGACTCCGTGGGTGCG
ACTGAATCCGCCGAAGGTGCCTCCGCTGGCGGATTAGGTGGTGCCGTTGA
GACTTTGGGTGGTTCTGCTGGTACGAACACCATTGGTGCTGGTGTTGGAA
GTTCCTTCGGCTCTAACTTTGCCTCCGGTTTTGGCGGCCAGAATGCTGCC
TCCTTTGGCGCTCAGAATGCTGCTGGCTTTGGCGCCCAGAATGCCGCCTC
CTTTGGCGCCCAGAATGCTGCCTCCTTCGGTAGCTCCTTCTCCAGCAACG
CCGCCTTTCAGACCAGCTCCGCCTCCAACTTCGGCAGCACCGCCGCTCAC
CAGGTGGGCAGCAATGTGGAGTTTGCTGATAACGCCAATGCCGGCAACAA
GGTTGACTTTGGTGGCGTAAACGCCGTGGACTCCAGTGCTCAGCTGCTCA
GCGGAGTTCAAACCGTGCAGTCCGTCCCCACTTCCGAGTATTACAGGCAC
GAGAAGATTGTGTCCACCCCGCAACAGGTGGTCTACACCATTCCCGGTGG
CTCCCAGCGTTACGTTCATCACGAGGAACGTATCGTTGAACAGCCTACCC
AGGTGACCCAGACGGTCCCAGTTCAAACCGCACACTACTATCAACGAAAG
GTGACCACCACTGCGTCCGCACCACAGCTGGTTCAGCCAGTTGCCAGCAG
CCGTTTGACTTACGGATCGAATGCCGCCTCCACCTTTGGCAGCAATGCTG
CCTCCAACTTCGGCAGCAATGCCGCCACCAACTTCGGCAGCAATGCCGCC
ACCAACTTCGGCAGCAATGCCGCCTTTAACTCTCAGTTTGGCAGTTCTTA
TGGCCAGAACTTCCAGCAGAACAGCCAGCTGAGCCAGCTGCTCAGCCAAA
CCCAGCAAGCTGCCCGTCAGCAGGCTGCCTTACAAGCCGCATCCGCCAAC
CAGGTGCAAGCTGGAAGTGGCTACGCCGCCGGCTCACAAGGTGGCTTTAA
CTCTGGCTACAACTCCGCCTTCAACTCTGGCTCCCAGTTTGGATTCAACT
CCGCTAGCTCTTTGAACTCTGCCAGCTCCCTGAACTCCGCCAGTACCGGT
AACAGCGCAGCTCTACTGAGTGGATCTCTGTTGGGCGGCAGCCAAGGATC
TCTGCTGAGCGGACAGGTTGGCGGACAGCAGTCGCTGCTCAGTGGATCCC
TATTAAGCGGACAGCAGAACTTGGGACTTGGACTGAACGCGGCACAGACC
GGTCAAGTGGTTGGAGCTAGCAGCGTTGGGGCCGGATTATCAGCAGGAGC
CGGAAACTTGGGCAGTGGCTACCGTACCAAGCAGTGGGAGAAGCAGTCCA
AGTGGTCTTCCCAGAACTCGTACGATTCCAATGGCCATGTCAACAACTAC
AAGGATCTAGTCACCGGCGAGAGCGAAAGTGTTGATATCAATGGCAAGCG
GGCGGGATACCATGCGGTGACAGCCTCCGTCGATGACAACGGCAAGATTG
GCACCCACAGTGTTCACTCGTAAAGCGTCTACATCAATCAGTACCCATAA
CTTTTTACGCCTGTCCTGTTCTTAGAGAGTGAAATACTCAGCTCGCACTG
TTGTTGGAAAATAATGTGAACGTAAAATAAATTTTTTAAATGTCAAAAAA
AAAAAAAAAAAAA

HL01053.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
fon-RC 2296 fon-RC 162..2058 1..1897 9485 100 Plus
fon-RB 2296 fon-RB 162..2058 1..1897 9485 100 Plus
fon-RA 2260 fon-RA 262..2022 137..1897 8805 100 Plus
fon-RA 2260 fon-RA 162..262 1..101 505 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19382416..19383899 1620..137 7375 99.8 Minus
chr2L 23010047 chr2L 19382024..19382298 1894..1620 1360 99.6 Minus
chr2L 23010047 chr2L 19384622..19384709 88..1 425 98.9 Minus
chr2L 23010047 chr2L 19382962..19383042 1050..970 330 93.8 Minus
chr2L 23010047 chr2L 19382986..19383066 1074..994 330 93.8 Minus
chr2L 23010047 chr2L 19382962..19383018 1026..970 210 91.2 Minus
chr2L 23010047 chr2L 19383010..19383066 1074..1018 210 91.2 Minus
chr2L 23010047 chr2L 19383509..19383582 503..430 205 85.1 Minus
chr2L 23010047 chr2L 19383533..19383606 527..454 205 85.1 Minus
chr2L 23010047 chr2L 19384205..19384244 137..98 200 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:26:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19383881..19385364 1620..137 7420 100 Minus
2L 23513712 2L 19383486..19383763 1897..1620 1390 100 Minus
2L 23513712 2L 19386087..19386174 88..1 440 100 Minus
2L 23513712 2L 19384427..19384507 1050..970 330 93.8 Minus
2L 23513712 2L 19384451..19384531 1074..994 330 93.8 Minus
2L 23513712 2L 19384427..19384483 1026..970 210 91.2 Minus
2L 23513712 2L 19384475..19384531 1074..1018 210 91.2 Minus
2L 23513712 2L 19384974..19385047 503..430 205 85.1 Minus
2L 23513712 2L 19384998..19385071 527..454 205 85.1 Minus
2L 23513712 2L 19385670..19385709 137..98 200 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19383881..19385364 1620..137 7420 100 Minus
2L 23513712 2L 19383486..19383763 1897..1620 1390 100 Minus
2L 23513712 2L 19386087..19386174 88..1 440 100 Minus
2L 23513712 2L 19385670..19385709 137..98 200 100 Minus
Blast to na_te.dros performed 2019-03-15 21:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2461..2648 876..1067 118 56.7 Plus

HL01053.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:19:52 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19384622..19384709 1..88 98   Minus
chr2L 19382024..19382297 1621..1894 99 <- Minus
chr2L 19382416..19383898 138..1620 99 <- Minus
chr2L 19384205..19384249 89..137 89 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:10:54 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
fon-RB 1..1734 40..1773 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:49:09 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
fon-RC 1..1734 40..1773 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:44:37 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
fon-RB 1..1734 40..1773 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:41:43 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
fon-RB 1..1734 40..1773 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:11 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
fon-RB 1..1734 40..1773 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:26:04 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
fon-RB 29..1922 1..1894 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:49:09 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
fon-RB 29..1922 1..1894 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:44:37 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
fon-RB 32..1925 1..1894 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:41:43 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
fon-RB 29..1922 1..1894 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:11 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
fon-RB 32..1925 1..1894 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:19:52 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19386087..19386174 1..88 100   Minus
2L 19383489..19383762 1621..1894 100 <- Minus
2L 19383881..19385363 138..1620 100 <- Minus
2L 19385670..19385714 89..137 89 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:19:52 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19386087..19386174 1..88 100   Minus
2L 19383489..19383762 1621..1894 100 <- Minus
2L 19383881..19385363 138..1620 100 <- Minus
2L 19385670..19385714 89..137 89 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:19:52 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19386087..19386174 1..88 100   Minus
2L 19383489..19383762 1621..1894 100 <- Minus
2L 19383881..19385363 138..1620 100 <- Minus
2L 19385670..19385714 89..137 89 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:44:37 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19383489..19383762 1621..1894 100 <- Minus
arm_2L 19383881..19385363 138..1620 100 <- Minus
arm_2L 19385670..19385714 89..137 89 <- Minus
arm_2L 19386087..19386174 1..88 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:14:01 Download gff for HL01053.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19383489..19383762 1621..1894 100 <- Minus
2L 19383881..19385363 138..1620 100 <- Minus
2L 19385670..19385714 89..137 89 <- Minus
2L 19386087..19386174 1..88 100   Minus

HL01053.hyp Sequence

Translation from 0 to 336

> HL01053.hyp
NVFFGQELKRIAKMNKLLILALCLGVVCGDLKVWGEPNVTVSTLATTVPT
DKRWSRLARTPATVEVIAVALELASMAPPLRLMTLLWENSRAPTTPWVRL
NPPKVPPLAD*
Sequence HL01053.hyp has no blast hits.

HL01053.pep Sequence

Translation from 39 to 1772

> HL01053.pep
MNKLLILALCLGVVCGDFQQSLGRTKRDSFHSRHYSTHGQAVEQARKNAG
YGGGYSGSFGAGVDGASAQVDDSALGKLESSYDSVGATESAEGASAGGLG
GAVETLGGSAGTNTIGAGVGSSFGSNFASGFGGQNAASFGAQNAAGFGAQ
NAASFGAQNAASFGSSFSSNAAFQTSSASNFGSTAAHQVGSNVEFADNAN
AGNKVDFGGVNAVDSSAQLLSGVQTVQSVPTSEYYRHEKIVSTPQQVVYT
IPGGSQRYVHHEERIVEQPTQVTQTVPVQTAHYYQRKVTTTASAPQLVQP
VASSRLTYGSNAASTFGSNAASNFGSNAATNFGSNAATNFGSNAAFNSQF
GSSYGQNFQQNSQLSQLLSQTQQAARQQAALQAASANQVQAGSGYAAGSQ
GGFNSGYNSAFNSGSQFGFNSASSLNSASSLNSASTGNSAALLSGSLLGG
SQGSLLSGQVGGQQSLLSGSLLSGQQNLGLGLNAAQTGQVVGASSVGAGL
SAGAGNLGSGYRTKQWEKQSKWSSQNSYDSNGHVNNYKDLVTGESESVDI
NGKRAGYHAVTASVDDNGKIGTHSVHS*

HL01053.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15199-PA 562 GF15199-PA 1..420 1..407 795 52.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21638-PA 559 GG21638-PA 1..559 1..577 1851 85.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13472-PA 579 GH13472-PA 12..579 12..577 876 47.3 Plus
Dgri\GH17550-PA 570 GH17550-PA 12..570 12..577 815 45.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
fon-PC 577 CG15825-PC 1..577 1..577 2908 100 Plus
fon-PB 577 CG15825-PB 1..577 1..577 2908 100 Plus
fon-PD 574 CG15825-PD 1..574 1..577 2875 99.5 Plus
fon-PA 565 CG15825-PA 1..565 1..577 2822 97.9 Plus
Mur89F-PC 2158 CG4090-PC 537..1028 43..528 211 21.7 Plus
Mur89F-PB 2159 CG4090-PB 537..1028 43..528 211 21.7 Plus
Alh-PD 1323 CG1070-PD 479..940 61..513 192 22.8 Plus
Alh-PA 1376 CG1070-PA 532..993 61..513 192 22.8 Plus
Alh-PP 1717 CG1070-PP 532..993 61..513 192 22.8 Plus
Alh-PL 1332 CG1070-PL 479..949 61..513 188 22.7 Plus
Alh-PK 1385 CG1070-PK 532..1002 61..513 188 22.7 Plus
Mur89F-PC 2158 CG4090-PC 263..751 26..528 177 21.7 Plus
Mur89F-PB 2159 CG4090-PB 263..751 26..528 177 21.7 Plus
Mur29B-PA 555 CG31901-PA 51..471 56..495 174 19.4 Plus
lig-PL 1261 CG8715-PL 653..961 148..510 166 25.3 Plus
lig-PK 1417 CG8715-PK 653..961 148..510 166 25.3 Plus
sbb-PE 929 CG5580-PE 313..791 49..520 162 20.9 Plus
sbb-PC 929 CG5580-PC 313..791 49..520 162 20.9 Plus
sbb-PF 939 CG5580-PF 323..801 49..520 162 20.9 Plus
sbb-PH 2302 CG5580-PH 313..791 49..520 162 20.9 Plus
sbb-PD 2302 CG5580-PD 313..791 49..520 162 20.9 Plus
sbb-PG 2312 CG5580-PG 323..801 49..520 162 20.9 Plus
sbb-PJ 2330 CG5580-PJ 323..801 49..520 162 20.9 Plus
CG7300-PD 886 CG7300-PD 19..556 48..574 161 23.5 Plus
CG7300-PB 886 CG7300-PB 19..556 48..574 161 23.5 Plus
lig-PI 1300 CG8715-PI 589..1053 43..531 161 23.9 Plus
lig-PG 1332 CG8715-PG 729..1257 53..574 160 24.5 Plus
lig-PF 1332 CG8715-PF 729..1257 53..574 160 24.5 Plus
lig-PE 1332 CG8715-PE 729..1257 53..574 160 24.5 Plus
lig-PB 1332 CG8715-PB 729..1257 53..574 160 24.5 Plus
lig-PA 1343 CG8715-PA 729..1257 53..574 160 24.5 Plus
lig-PC 1343 CG8715-PC 729..1257 53..574 160 24.5 Plus
lig-PD 1375 CG8715-PD 729..1257 53..574 160 24.5 Plus
lig-PH 1330 CG8715-PH 729..1249 53..565 159 24.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17224-PA 542 GI17224-PA 139..542 174..577 665 48.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21112-PA 566 GL21112-PA 1..412 1..419 975 55.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13975-PA 566 GA13975-PA 1..412 1..419 975 55.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17016-PA 571 GM17016-PA 1..571 1..577 2180 93.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21766-PA 571 GD21766-PA 1..571 1..577 2083 93.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17981-PA 542 GJ17981-PA 1..378 1..403 651 45.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23841-PA 563 GK23841-PA 497..563 511..577 260 68.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12657-PA 561 GE12657-PA 1..561 1..577 1981 85.9 Plus