Clone HL01076 Report

Search the DGRC for HL01076

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:10
Well:76
Vector:pBS SK-
Associated Gene/TranscriptEct3-RA
Protein status:HL01076.pep: gold
Preliminary Size:2314
Sequenced Size:2258

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3132 2001-01-01 Release 2 assignment
CG3132 2002-06-06 Blastp of sequenced clone
CG3132 2003-01-01 Sim4 clustering to Release 3
Ect3 2008-04-29 Release 5.5 accounting
Ect3 2008-08-15 Release 5.9 accounting
Ect3 2008-12-18 5.12 accounting

Clone Sequence Records

HL01076.complete Sequence

2258 bp (2258 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119565

> HL01076.complete
AACAGTTGGCGCACTTTCCACCTAGTAATTGCAACCATCGCGATCGTATT
CTGTGTTTTTATATCGTCTGTGCTCTAAATCAACACTAAAAAGTCAAACA
CTTCTTTCACTGCGTGTAGCTGCAATCGGCGAGAATGAAGTTCAGTGTGG
TGGTCCTGGTGGCCCTACTACCGCTGCTAGGAGCTGTTTCAGCGAATCGC
ACTTTTGTGGTGGACTACGAAAAGGATCAGTTCCTAAAGGATGGAGAACC
ATTCCGATTCATTGCCGGCTCCTTCCACTACTTCCGTGCTCATCCAGCCA
CCTGGCAAAGGCATCTTAGGACCATGAGAGCTGCGGGTCTGAATGCGGTG
ACAACCTATGTGGAGTGGTCATTGCACAATCCGCGGGATGGCGTTTATGT
GTGGAGCGGCATTGCCGATCTGGAACACTTTATACGCCTGGCCGTGGGCG
AGGATCTGCTGGTCATCCTCCGTCCGGGTCCGTATATTTGTGCGGAGCGT
GACATGGGCGGCTTTCCCTACTGGCTGCTGAATAAGTATCCGGGCATTCA
GCTCCGGACAGCAGATGTCAATTATCTTAGCGAAATTCGCATTTGGTATA
CCCAACTGTTTGCCAAAATGAATAAATATCTGTATGGCAATGGTGGGCCA
ATTATAATGGTTCAGGTGGAGAACGAATATGGCTCCTTCTATGCCTGCGA
TCTCAACTATCGGAATTGGCTACGCGATGAGACCGAGAGTCATGTCAAAG
GTCAGGCGGTGCTCTTCACCAACGATGGACCCAGTGTGCTGCGCTGTGGA
AAAATCCAGGGCGTCCTAGCGACCATGGACTTTGGAGCAACGAACGATCT
CAAGCCCATTTGGGCCAAGTTTAGAAGGTACCAGCCAAAGGGTCCGCTGG
TCAATGCGGAATACTATCCCGGTTGGCTAACTCACTGGACGGAGCCGATG
GCCAATGTTAGCACCCAATCGATTACTTCCACTTTTATAAACATGCTGGA
TCATGGTGCCAGTGTGAACTTCTACATGTTCTACGGCGGCACCAACTTCG
GATTCACAGCTGGTGCCAATGACATTGGACCCGGAAACTACATGGCTGAC
ATTACCAGCTACGACTACGATGCACCCATGACGGAGGCGGGGGATCCCAC
TCCCAAATACCAGGCCCTGCGACGCATCATTGGCCGCTATCTCCCGCTGC
CAAATCAACCCGTGCCCGGACCCGTACCCAAGCGATCCTACGGAACTGTG
CGTCTGACCACCTGCTGTAGTCTGCTTTCGTCGGAGGCTCGATCTCGTCT
CTCCACTGGATTTGTGCAGTCCGCCAAGCCGAAGAGCTTCGAGGCTTTGG
GACAGTACTCTGGTTTGGTGCTCTACGAGACCTGGTTGCCCAGCTTCCAG
CGGGATCCGAGCATCCTTAGCGTTCCCGGACTGGCGGATCGAGGTTACGT
TTATGTGGATGGTGAGTTCGTGGGTATTCTGGCCAGGGAAACCCCCGTGT
TCGAATTGCCACTCAGTGCAAGTGCCGGGCGGAGGTTCCAGATTATCGTA
GAGAACCAGGGTCGCATCAACTACGGTCGACAGTTGAACGATTTTAAGGG
CATCCTGCGGGATGTTCGACTGGACAAGCAGGTGCTGAGCAACTGGAACA
TGACCCAATTCCCACTCGAATCGTACGACAACCTGGAGCAGCTGATTACC
CAGTCGGATGAGGCAGTTCGTCAGGGCTTCCAGGAGCTAAAGAAGTTGCG
CACAATGCTGCGCACTGGTCCCGCCATTTACCACGGTCAACTGGACATCC
AAAAGGAATCTGATCTGGCGGACACCTATCTGGACATGTCCGGCTGGGGC
AAGGGCATTGTCTTTGTGAATGGCGAAAATCTCGGCAGGTATTGGCCCCT
GGTGGGACCTCAAGTCACCCTGTATGTTCCGGCCGCCGTGCTCAAGGCGG
GCTCAAATCGACTGGTGGTGGTGGAGTATCAGCAGACACCCGCCTCACAG
GAGCTGCACTTCCGAGATACCCCCATTCTGAACGCGAGGACCGTTTAGTC
GTCGGCCTAAGGACCATTGCGACTTGCATCCATCGCTGTAGCCATAAATC
ATGCATCATCATCCGTATATGTAGATCTAAATGTAAATTTATGCGGTTTA
AGTTCTTTGCAAGACATTAAAGCAACTCCGAGACGGACGCGTCCTGTCTG
CCTCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

HL01076.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
Ect3-RA 2377 Ect3-RA 49..2256 1..2208 11040 100 Plus
Ect3.a 2353 Ect3.a 270..2344 134..2208 10375 100 Plus
Ect3.a 2353 Ect3.a 26..158 1..133 665 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7827736..7828954 989..2207 6095 100 Plus
chr3R 27901430 chr3R 7827214..7827631 571..988 2075 99.8 Plus
chr3R 27901430 chr3R 7826645..7826868 132..355 1105 99.6 Plus
chr3R 27901430 chr3R 7826920..7827139 351..570 1085 99.5 Plus
chr3R 27901430 chr3R 7824736..7824868 1..133 665 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:26:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12002298..12003517 989..2208 6100 100 Plus
3R 32079331 3R 12001776..12002193 571..988 2090 100 Plus
3R 32079331 3R 12001207..12001430 132..355 1120 100 Plus
3R 32079331 3R 12001482..12001701 351..570 1085 99.5 Plus
3R 32079331 3R 11999307..11999439 1..133 665 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11743129..11744348 989..2208 6100 100 Plus
3R 31820162 3R 11742607..11743024 571..988 2090 100 Plus
3R 31820162 3R 11742038..11742261 132..355 1120 100 Plus
3R 31820162 3R 11742313..11742532 351..570 1085 99.5 Plus
3R 31820162 3R 11740138..11740270 1..133 665 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:16:01 has no hits.

HL01076.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:17:04 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7824736..7824868 1..133 100 -> Plus
chr3R 7826647..7826868 134..355 99 -> Plus
chr3R 7826925..7827139 356..570 100 -> Plus
chr3R 7827214..7827631 571..988 99 -> Plus
chr3R 7827736..7828954 989..2207 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:10:58 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 1..1914 135..2048 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:30:06 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 1..1914 135..2048 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:32 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 1..1914 135..2048 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:22 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 1..1914 135..2048 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:37 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 1..1914 135..2048 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:59:43 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 1..2207 1..2207 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:30:06 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 1..2207 1..2207 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:32 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 30..2236 1..2207 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:23 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 1..2207 1..2207 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:37 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 30..2236 1..2207 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:17:04 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11999307..11999439 1..133 100 -> Plus
3R 12001209..12001430 134..355 100 -> Plus
3R 12001487..12001701 356..570 100 -> Plus
3R 12001776..12002193 571..988 100 -> Plus
3R 12002298..12003516 989..2207 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:17:04 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11999307..11999439 1..133 100 -> Plus
3R 12001209..12001430 134..355 100 -> Plus
3R 12001487..12001701 356..570 100 -> Plus
3R 12001776..12002193 571..988 100 -> Plus
3R 12002298..12003516 989..2207 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:17:04 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11999307..11999439 1..133 100 -> Plus
3R 12001209..12001430 134..355 100 -> Plus
3R 12001487..12001701 356..570 100 -> Plus
3R 12001776..12002193 571..988 100 -> Plus
3R 12002298..12003516 989..2207 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:32 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7825029..7825161 1..133 100 -> Plus
arm_3R 7826931..7827152 134..355 100 -> Plus
arm_3R 7827209..7827423 356..570 100 -> Plus
arm_3R 7827498..7827915 571..988 100 -> Plus
arm_3R 7828020..7829238 989..2207 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:02 Download gff for HL01076.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11742040..11742261 134..355 100 -> Plus
3R 11742318..11742532 356..570 100 -> Plus
3R 11742607..11743024 571..988 100 -> Plus
3R 11743129..11744347 989..2207 100   Plus
3R 11740138..11740270 1..133 100 -> Plus

HL01076.pep Sequence

Translation from 134 to 2047

> HL01076.pep
MKFSVVVLVALLPLLGAVSANRTFVVDYEKDQFLKDGEPFRFIAGSFHYF
RAHPATWQRHLRTMRAAGLNAVTTYVEWSLHNPRDGVYVWSGIADLEHFI
RLAVGEDLLVILRPGPYICAERDMGGFPYWLLNKYPGIQLRTADVNYLSE
IRIWYTQLFAKMNKYLYGNGGPIIMVQVENEYGSFYACDLNYRNWLRDET
ESHVKGQAVLFTNDGPSVLRCGKIQGVLATMDFGATNDLKPIWAKFRRYQ
PKGPLVNAEYYPGWLTHWTEPMANVSTQSITSTFINMLDHGASVNFYMFY
GGTNFGFTAGANDIGPGNYMADITSYDYDAPMTEAGDPTPKYQALRRIIG
RYLPLPNQPVPGPVPKRSYGTVRLTTCCSLLSSEARSRLSTGFVQSAKPK
SFEALGQYSGLVLYETWLPSFQRDPSILSVPGLADRGYVYVDGEFVGILA
RETPVFELPLSASAGRRFQIIVENQGRINYGRQLNDFKGILRDVRLDKQV
LSNWNMTQFPLESYDNLEQLITQSDEAVRQGFQELKKLRTMLRTGPAIYH
GQLDIQKESDLADTYLDMSGWGKGIVFVNGENLGRYWPLVGPQVTLYVPA
AVLKAGSNRLVVVEYQQTPASQELHFRDTPILNARTV*

HL01076.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17225-PA 637 GF17225-PA 1..636 1..636 2936 84.1 Plus
Dana\GF14288-PA 661 GF14288-PA 1..648 1..637 1620 49.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18564-PA 637 GG18564-PA 1..637 1..637 3233 95.8 Plus
Dere\GG24263-PA 672 GG24263-PA 46..642 24..618 1618 52.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23545-PA 639 GH23545-PA 8..639 6..636 2700 79.1 Plus
Dgri\GH25263-PA 619 GH25263-PA 8..619 6..636 2529 75.3 Plus
Dgri\GH10713-PA 680 GH10713-PA 55..650 23..618 1609 51.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ect3-PA 637 CG3132-PA 1..637 1..637 3388 100 Plus
Gal-PA 672 CG9092-PA 23..641 1..617 1624 52 Plus
Gal-PB 670 CG9092-PB 44..639 24..617 1622 53.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23552-PA 641 GI23552-PA 1..638 1..635 2765 78.5 Plus
Dmoj\GI11295-PA 678 GI11295-PA 51..649 23..618 1619 52.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22259-PA 640 GL22259-PA 1..639 1..636 2842 80.3 Plus
Dper\GL19091-PA 672 GL19091-PA 47..642 24..618 1639 53.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16177-PA 640 GA16177-PA 1..639 1..636 2843 80.4 Plus
Dpse\GA25341-PA 672 GA25341-PA 47..642 24..618 1645 53.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23992-PA 622 GM23992-PA 1..622 1..637 3236 95.4 Plus
Dsec\GM17976-PA 672 GM17976-PA 23..642 1..618 1630 51.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18795-PA 636 GD18795-PA 1..636 1..637 3353 98.1 Plus
Dsim\GD22613-PA 81 GD22613-PA 1..60 64..123 237 68.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23531-PA 640 GJ23531-PA 3..638 1..635 2754 79.6 Plus
Dvir\GJ12525-PA 684 GJ12525-PA 57..655 24..618 1623 52.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11429-PA 640 GK11429-PA 1..639 1..636 2741 79.1 Plus
Dwil\GK15404-PA 673 GK15404-PA 48..643 24..617 1627 52.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26154-PA 637 GE26154-PA 1..637 1..637 3232 95.6 Plus
Dyak\GE18961-PA 672 GE18961-PA 46..642 24..618 1630 53 Plus

HL01076.hyp Sequence

Translation from 134 to 2047

> HL01076.hyp
MKFSVVVLVALLPLLGAVSANRTFVVDYEKDQFLKDGEPFRFIAGSFHYF
RAHPATWQRHLRTMRAAGLNAVTTYVEWSLHNPRDGVYVWSGIADLEHFI
RLAVGEDLLVILRPGPYICAERDMGGFPYWLLNKYPGIQLRTADVNYLSE
IRIWYTQLFAKMNKYLYGNGGPIIMVQVENEYGSFYACDLNYRNWLRDET
ESHVKGQAVLFTNDGPSVLRCGKIQGVLATMDFGATNDLKPIWAKFRRYQ
PKGPLVNAEYYPGWLTHWTEPMANVSTQSITSTFINMLDHGASVNFYMFY
GGTNFGFTAGANDIGPGNYMADITSYDYDAPMTEAGDPTPKYQALRRIIG
RYLPLPNQPVPGPVPKRSYGTVRLTTCCSLLSSEARSRLSTGFVQSAKPK
SFEALGQYSGLVLYETWLPSFQRDPSILSVPGLADRGYVYVDGEFVGILA
RETPVFELPLSASAGRRFQIIVENQGRINYGRQLNDFKGILRDVRLDKQV
LSNWNMTQFPLESYDNLEQLITQSDEAVRQGFQELKKLRTMLRTGPAIYH
GQLDIQKESDLADTYLDMSGWGKGIVFVNGENLGRYWPLVGPQVTLYVPA
AVLKAGSNRLVVVEYQQTPASQELHFRDTPILNARTV*

HL01076.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ect3-PA 637 CG3132-PA 1..637 1..637 3388 100 Plus
Gal-PA 672 CG9092-PA 23..641 1..617 1624 52 Plus
Gal-PB 670 CG9092-PB 44..639 24..617 1622 53.1 Plus