Clone HL01138 Report

Search the DGRC for HL01138

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:11
Well:38
Vector:pBS SK-
Associated Gene/TranscriptFie-RA
Protein status:HL01138.pep: gold
Preliminary Size:1643
Sequenced Size:1440

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1079 2001-01-01 Release 2 assignment
CG1079 2001-10-10 Blastp of sequenced clone
CG1079 2003-01-01 Sim4 clustering to Release 3
Fie 2008-04-29 Release 5.5 accounting
Fie 2008-08-15 Release 5.9 accounting
Fie 2008-12-18 5.12 accounting

Clone Sequence Records

HL01138.complete Sequence

1440 bp (1440 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060992

> HL01138.complete
CAGCCGCGGAACAGTTGCGTCGCTCCTTGATTAGCTGAATAAGCGGGAAA
AATCCATAAATTGATTAAGTAAAACTCGGAAAACTAAAGTGAAATGCTGC
TGCCAACGGTCAGCGGCCAATCCGCCGCAGGATGCAAATGGAAAAACTGC
TGTCGCCGCAGCTGGGAAATGCTGATGGCGCCCGTATCGCCCAAGAACCT
CAGGACCACGGCGCTCTTGACGAGCATCTACCAGTTGTTAATCTCCCACT
GCGCCCTTTTCCTGGTTCTCCTGGGACTGGCGCATGCCGAACAGATGTGC
GAGGTGCTGGAGCTGGACATCTTGGACCAGAAGGACAATGGTTTCTACAA
CATGTCGCCCTTTCACAACGATCTTCGCCTGCAAACCGCTGCCCAATTGG
CCGTCGCCACGGAGAATCTGCTCTACGTGATGGCTGGTATCGCGGGTACC
TACGCCCTGAGTGCCATATTCCTGTTTTTCGGAGTCTTCAAAAATCGGCC
GGGCCTAATCATACCCTGGCTGGTTGTGGAGTTCCTATTAATGATTGGTT
TGGGGGCACTGGTCTTCATGCTGAGGGATACAAAAATCGTGCAATTGCTG
GGTGGTCAAGTGCCCTACTTTATCATTTGCTACATCTTGATCTGCATGGA
TTACTGCAAGTGGTATGTGATGCATAGCTTCTACCAGAGTCTACGCACCA
TGAATAAGCTTCGAGAGATTGCCACTGTGGCCATACCATGTCCAGCTCCA
GGAGCCATACCCTATCGTTTCCAACGCGAGCACATGTATCTGGGCAGCAA
TGGATATAAGCACATTCTAACCGAGTCTCCCGATGGACAGTGTTAAACAT
GTACTGAAAGATTGGATATTTTTGGAACTTCCCATCAGGTGTCTTGATTG
CAATTGCACTGCAAATTCTGTATTGCAAAACAGAGTGTGATATGGTTTTG
GTAGAGATACTATTTTATATAGCCAACGGACATGGAGCGGCTTATTAGAA
ATGCAGAATCGGTTCAAAGCGTTCGGCGATTAAACTATAAACTATTTTTG
TGTAGAAATAGCTCCCAAAGCACCTTAAAAAATAAAAAAAATAATAATAA
TATTTGGTCACTAACGCGACTCGAACTCGGAACTTCGAAGCGAAGGTCGC
ACTCTCTAACCCCTAGGCTACGGCAGCGAAACTCTCGGGATAGCCGAGAT
TGATTAAGCCCCAAAATCTTGAAACGAAAAACTTGTCTTAAATAAATTGG
CGTTCATACAAATATGTATTGTAGCAACGAATTTTTTAAAGCTTAGTTTC
TCAGTAGATTTACCACTACTTAACTATAATATGCCTTAAATTCTGTTGAC
TAGCAATATTTTAGGTATTTCTATTTTGTGGCACAGAACGAATATCAAAT
AAAAGTGCAAAATTGTAACATAAAAAAAAAAAAAAAAAAA

HL01138.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Fie-RA 1801 Fie-RA 378..1799 1..1422 7110 100 Plus
Fie.a 1625 Fie.a 205..1625 1..1421 7090 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3893608..3894273 757..1421 3130 98.3 Plus
chr3L 24539361 chr3L 3892972..3893354 237..619 1855 99 Plus
chr3L 24539361 chr3L 3892193..3892433 1..241 1145 98.3 Plus
chr3L 24539361 chr3L 3893417..3893553 620..756 670 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:26:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3894169..3894834 757..1422 3330 100 Plus
3L 28110227 3L 3893532..3893914 237..619 1915 100 Plus
3L 28110227 3L 3892753..3892993 1..241 1190 99.6 Plus
3L 28110227 3L 3893978..3894114 620..756 685 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3894169..3894834 757..1422 3330 100 Plus
3L 28103327 3L 3893532..3893914 237..619 1915 100 Plus
3L 28103327 3L 3892753..3892993 1..241 1190 99.5 Plus
3L 28103327 3L 3893978..3894114 620..756 685 100 Plus
Blast to na_te.dros performed 2019-03-16 15:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 5913..5984 1340..1413 121 66.2 Plus

HL01138.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:41:35 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3893417..3893553 620..756 99 -> Plus
chr3L 3892193..3892429 1..237 98 -> Plus
chr3L 3892973..3893354 238..619 98 -> Plus
chr3L 3893608..3894273 757..1421 93   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:11:04 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 1..753 94..846 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:59 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 1..753 94..846 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:51:15 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 1..753 94..846 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:44 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 1..753 94..846 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:51:43 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 1..753 94..846 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:31:56 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 180..1600 1..1421 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:59 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 180..1600 1..1421 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:51:15 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 180..1600 1..1421 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:16:44 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 180..1600 1..1421 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:51:43 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
Fie-RA 180..1600 1..1421 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:41:35 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3892753..3892989 1..237 100 -> Plus
3L 3893533..3893914 238..619 100 -> Plus
3L 3893978..3894114 620..756 100 -> Plus
3L 3894169..3894833 757..1421 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:41:35 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3892753..3892989 1..237 100 -> Plus
3L 3893533..3893914 238..619 100 -> Plus
3L 3893978..3894114 620..756 100 -> Plus
3L 3894169..3894833 757..1421 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:41:35 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3892753..3892989 1..237 100 -> Plus
3L 3893533..3893914 238..619 100 -> Plus
3L 3893978..3894114 620..756 100 -> Plus
3L 3894169..3894833 757..1421 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:51:15 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3892753..3892989 1..237 100 -> Plus
arm_3L 3893533..3893914 238..619 100 -> Plus
arm_3L 3893978..3894114 620..756 100 -> Plus
arm_3L 3894169..3894833 757..1421 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:53:39 Download gff for HL01138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3892753..3892989 1..237 100 -> Plus
3L 3893533..3893914 238..619 100 -> Plus
3L 3893978..3894114 620..756 100 -> Plus
3L 3894169..3894833 757..1421 100   Plus

HL01138.pep Sequence

Translation from 93 to 845

> HL01138.pep
MLLPTVSGQSAAGCKWKNCCRRSWEMLMAPVSPKNLRTTALLTSIYQLLI
SHCALFLVLLGLAHAEQMCEVLELDILDQKDNGFYNMSPFHNDLRLQTAA
QLAVATENLLYVMAGIAGTYALSAIFLFFGVFKNRPGLIIPWLVVEFLLM
IGLGALVFMLRDTKIVQLLGGQVPYFIICYILICMDYCKWYVMHSFYQSL
RTMNKLREIATVAIPCPAPGAIPYRFQREHMYLGSNGYKHILTESPDGQC
*

HL01138.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24229-PA 250 GF24229-PA 1..250 1..250 1186 88 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15166-PA 250 GG15166-PA 1..250 1..250 1317 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16431-PA 246 GH16431-PA 1..246 1..250 1020 76.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Fie-PB 250 CG1079-PB 1..250 1..250 1324 100 Plus
Fie-PA 250 CG1079-PA 1..250 1..250 1324 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12515-PA 241 GI12515-PA 1..241 1..250 955 72 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22361-PA 170 GL22361-PA 1..170 49..250 622 59.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10560-PA 242 GA10560-PA 7..242 15..250 977 74.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14595-PA 250 GM14595-PA 1..250 1..250 1327 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17625-PA 250 GD17625-PA 1..250 1..250 1330 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12420-PA 244 GJ12420-PA 1..243 1..249 979 73.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20530-PA 238 GK20530-PA 4..238 15..250 1014 80.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21385-PA 250 GE21385-PA 1..250 1..250 1301 97.2 Plus

HL01138.hyp Sequence

Translation from 93 to 845

> HL01138.hyp
MLLPTVSGQSAAGCKWKNCCRRSWEMLMAPVSPKNLRTTALLTSIYQLLI
SHCALFLVLLGLAHAEQMCEVLELDILDQKDNGFYNMSPFHNDLRLQTAA
QLAVATENLLYVMAGIAGTYALSAIFLFFGVFKNRPGLIIPWLVVEFLLM
IGLGALVFMLRDTKIVQLLGGQVPYFIICYILICMDYCKWYVMHSFYQSL
RTMNKLREIATVAIPCPAPGAIPYRFQREHMYLGSNGYKHILTESPDGQC
*

HL01138.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Fie-PB 250 CG1079-PB 1..250 1..250 1324 100 Plus
Fie-PA 250 CG1079-PA 1..250 1..250 1324 100 Plus