Clone HL01173 Report

Search the DGRC for HL01173

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:11
Well:73
Vector:pBS SK-
Associated Gene/TranscriptCG3630-RA
Protein status:HL01173.pep: gold
Preliminary Size:2034
Sequenced Size:1943

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3630 2001-10-10 Blastp of sequenced clone
CG3630 2003-01-01 Sim4 clustering to Release 3
CG3630 2008-04-29 Release 5.5 accounting
CG3630 2008-08-15 Release 5.9 accounting
CG3630 2008-12-18 5.12 accounting

Clone Sequence Records

HL01173.complete Sequence

1943 bp (1943 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060993

> HL01173.complete
CGGCGTGTACCCGCTAGAGATATATACATATATACATATAAGATAATAAG
ATATATAGCATCACAAGCAAGTTGAATACAAAATAGAACCCGGAACGCAG
GCATTCACAGAGTATCGCTCGGTTGATAGACTTTTTCTTGTTTTTTTTCC
GTTGTAAAATCAAAAAAGAAACGTTTTCGAAACGTGTGCATTTTGCATTG
TGAGTGGATCGAGTAGAATAAAATCGAATCGAATCGATTTGGAAACTTGG
AAGCCCGCCCCGTCGAGGAATTCCAGCCAGCCGAAAAGTCAGGAATAAGA
GGAGCCACTTCCGAAAACCCCAGAAAGTAAAAAAGAGTGTTGCGGATCCA
GCTAGCGATCGCACCCCCCGTCCGGACCAGTCACCGCATTCGCCAATCTG
CAAGATCCCAGCCAGAGCCCGGAGCCCAATCCATCCAAGCCGAGTGCAGC
CATGACGGACGTATCGCATGAACTGGGCGCCTTGCGCTTCGTGGTGGACT
CACCACTGTCCTCCAAGGTGGCCATGTTCAACAACCAGGCCACGCAGCAC
AAGCAGTCGCAGCTGCTGAATCCATTTTCCCAGGACGGACGCGCCGCCTC
GCCGAAACCCACTTTCTCGAAGGATCAGTATGGAAAACCACTGGCCGGCA
GCCTTACAGAGATGCGTGGCCAGAAGGCCAACATCCACGTGATGAAGGAG
ATGCTGGAGCTCTGCCAGATCATCAATTCGGAGGGCTACGACGTCAAGGA
CGAGCCCACTATGCGTGTGATCCCCTTCGGCGAACTTTTTAATATCTATA
ACTACATATCCGACAAGGTGGTGGGCATCCTGCTGCGGGCCCGCAAACAC
AAGTTGGTAGACTTCGAGGGCGAGATGTTGTACCAGCGGAGGGACGATGA
CGTTCCCGTCTTTCTGCTGAAGCCCATCAAGGAAATACGCAGTGAGATGG
AGGCCAAGATTGAAGACATCAAGAGGGCGGCTAGTCCAGCGCCTCCGCAG
TCCACCTCGGTGCTGATGGATCGCAGTGCTCACGAACAAAAACTGAAGTC
GAGGACTCCCTCGCCGGCTGTGGGCAAGTCCGCCAAGTCGAAGTCAGCGT
CGCCGGCACCCAAGGCTCCTGTACCTGTTCCTGCGCCTGCTGCAGAAGTC
ACGCCTGTGGCTGGGCCCACAACTTCTGCAGAACCTGCTCCTGTGGCAGA
GTCCACTATGGCAGCAGTTCCAGCTCCGTCTACAGAGCCCACACCGGCAA
CAGCTCCTGCTTCGAGTACCGTTGAGATCGAGCCAGCCAAGCCAGAGGTG
ACCGAACAGGCGCCCGTGGCTGTGATAGTCACAGAAGCACCATCCACAGA
AGAAACCACACCAACCACCAGCGAACCGCAGGCGGAGGAAGCACCCGCTG
CAGTTGCACCGGCAGGACCTGCTGATGACTTACCCACAATTGTGATTGAA
GCCACCGCCGAGTTTGTACGCACCGTCAGCGTGGAGCAGCTGGCGCCCAG
TCCCGGAACGGCCAGCGAGTCCTCGCCAGACCAGTCCCAATCCCAACCAG
AGTCGACGCCCGCTTAAGGCGGAACAGGGAGCTTGTTAGCTGGGAAGGAA
GGAAGGAACATCCCCTTAAATCGTTTAAAAGGAACTCTCGCAACTACTAA
AGCGGCAGCTTTAAATTGCAGTAGTTTAGTTTACGGCGTACTTAGTTTAA
TTTACAATTAGAGCAACACAACACTGAAGACAGAATCGAGAGTAACTTTT
TATTTATTATTATTACTTGTATATTATTAATGGACGACCAAAGGAGCCAG
TTTCCTCAATTTGTTAACCATTACTCTATGGAAATGAACTACGGTTTCCC
ACTCACAAAAGTTGGGAACGTGCAAGGCAATAAAATACTAATAAAATAAA
TACACGTACATAGACCCAATAAAAAAAAAAAAAAAAAAAAAAA

HL01173.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3630-RA 1960 CG3630-RA 27..1947 1..1921 9590 99.9 Plus
CG3630.a 1780 CG3630.a 29..1780 169..1920 8745 99.9 Plus
CG3630.c 1781 CG3630.c 358..1781 497..1920 7105 99.9 Plus
CG3630.c 1781 CG3630.c 27..357 1..331 1655 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2065086..2066212 794..1920 5590 99.7 Plus
chrX 22417052 chrX 2060763..2061093 1..331 1655 100 Plus
chrX 22417052 chrX 2064719..2065016 496..793 1490 100 Plus
chrX 22417052 chrX 2061995..2062160 332..497 830 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:26:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2171155..2172282 794..1921 5625 99.9 Plus
X 23542271 X 2166837..2167167 1..331 1655 100 Plus
X 23542271 X 2170788..2171085 496..793 1490 100 Plus
X 23542271 X 2168069..2168234 332..497 830 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2179253..2180380 794..1921 5625 99.9 Plus
X 23527363 X 2174935..2175265 1..331 1655 100 Plus
X 23527363 X 2178886..2179183 496..793 1490 100 Plus
X 23527363 X 2176167..2176332 332..497 830 100 Plus
Blast to na_te.dros performed on 2019-03-16 08:27:08 has no hits.

HL01173.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:27:49 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2060763..2061093 1..331 100 -> Plus
chrX 2061995..2062159 332..496 100 -> Plus
chrX 2064720..2065016 497..793 100 -> Plus
chrX 2065086..2066212 794..1920 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:11:05 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 1..1116 452..1567 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:48:01 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 1..1116 452..1567 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:51:49 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 1..1116 452..1567 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:45 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 1..1116 452..1567 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:41:32 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 1..1116 452..1567 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:31:57 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 23..1942 1..1920 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:48:00 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 23..1942 1..1920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:51:49 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 29..1948 1..1920 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:16:45 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 23..1942 1..1920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:41:32 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
CG3630-RA 29..1948 1..1920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:27:49 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
X 2166837..2167167 1..331 100 -> Plus
X 2168069..2168233 332..496 100 -> Plus
X 2170789..2171085 497..793 100 -> Plus
X 2171155..2172281 794..1920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:27:49 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
X 2166837..2167167 1..331 100 -> Plus
X 2168069..2168233 332..496 100 -> Plus
X 2170789..2171085 497..793 100 -> Plus
X 2171155..2172281 794..1920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:27:49 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
X 2166837..2167167 1..331 100 -> Plus
X 2168069..2168233 332..496 100 -> Plus
X 2170789..2171085 497..793 100 -> Plus
X 2171155..2172281 794..1920 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:51:49 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2060870..2061200 1..331 100 -> Plus
arm_X 2062102..2062266 332..496 100 -> Plus
arm_X 2064822..2065118 497..793 100 -> Plus
arm_X 2065188..2066314 794..1920 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:53:40 Download gff for HL01173.complete
Subject Subject Range Query Range Percent Splice Strand
X 2174935..2175265 1..331 100 -> Plus
X 2176167..2176331 332..496 100 -> Plus
X 2178887..2179183 497..793 100 -> Plus
X 2179253..2180379 794..1920 99   Plus

HL01173.pep Sequence

Translation from 451 to 1566

> HL01173.pep
MTDVSHELGALRFVVDSPLSSKVAMFNNQATQHKQSQLLNPFSQDGRAAS
PKPTFSKDQYGKPLAGSLTEMRGQKANIHVMKEMLELCQIINSEGYDVKD
EPTMRVIPFGELFNIYNYISDKVVGILLRARKHKLVDFEGEMLYQRRDDD
VPVFLLKPIKEIRSEMEAKIEDIKRAASPAPPQSTSVLMDRSAHEQKLKS
RTPSPAVGKSAKSKSASPAPKAPVPVPAPAAEVTPVAGPTTSAEPAPVAE
STMAAVPAPSTEPTPATAPASSTVEIEPAKPEVTEQAPVAVIVTEAPSTE
ETTPTTSEPQAEEAPAAVAPAGPADDLPTIVIEATAEFVRTVSVEQLAPS
PGTASESSPDQSQSQPESTPA*

HL01173.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21072-PA 397 GF21072-PA 1..224 1..220 1144 95.1 Plus
Dana\GF24258-PA 187 GF24258-PA 13..170 17..174 372 41.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12911-PA 431 GG12911-PA 55..431 1..371 1645 94.4 Plus
Dere\GG14895-PA 183 GG14895-PA 10..183 16..190 389 42.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24296-PA 430 GH24296-PA 1..218 1..220 1002 82.5 Plus
Dgri\GH16995-PA 190 GH16995-PA 6..169 5..174 373 42.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3630-PD 371 CG3630-PD 1..371 1..371 1868 100 Plus
CG3630-PC 371 CG3630-PC 1..371 1..371 1868 100 Plus
CG3630-PA 371 CG3630-PA 1..371 1..371 1868 100 Plus
CG3630-PB 347 CG3630-PB 1..347 25..371 1752 100 Plus
CG2113-PB 179 CG2113-PB 6..179 16..190 367 41.2 Plus
CG2113-PA 183 CG2113-PA 10..183 16..190 367 41.2 Plus
Muc55B-PB 485 CG5765-PB 208..457 152..369 164 32.1 Plus
Muc55B-PA 485 CG5765-PA 208..457 152..369 164 32.1 Plus
Nopp140-PF 685 CG7421-PF 97..296 173..368 163 30 Plus
Nopp140-PB 686 CG7421-PB 97..296 173..368 163 30 Plus
Nopp140-PA 720 CG7421-PA 97..296 173..368 163 30 Plus
Nopp140-PE 773 CG7421-PE 97..296 173..368 163 30 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16419-PA 407 GI16419-PA 1..202 1..203 1032 90.6 Plus
Dmoj\GI11408-PA 218 GI11408-PA 24..193 13..181 361 42.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20214-PA 370 GL20214-PA 1..340 1..348 1184 71.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17571-PA 370 GA17571-PA 1..340 1..348 1179 71.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19201-PA 355 GM19201-PA 1..355 1..371 1571 89.9 Plus
Dsec\GM14520-PA 176 GM14520-PA 3..176 16..190 380 42.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16590-PA 353 GD16590-PA 1..353 25..371 1703 95.8 Plus
Dsim\GD13717-PA 176 GD13717-PA 3..176 16..190 380 42.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17040-PA 391 GJ17040-PA 1..216 1..207 1020 85.7 Plus
Dvir\GJ13604-PA 187 GJ13604-PA 9..168 16..174 354 42.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25143-PA 382 GK25143-PA 1..371 1..360 1175 66.1 Plus
Dwil\GK16575-PA 187 GK16575-PA 17..175 22..181 354 41.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16240-PA 380 GE16240-PA 1..380 1..371 1510 90.3 Plus
Dyak\GE20348-PA 179 GE20348-PA 6..179 16..190 382 41.2 Plus

HL01173.hyp Sequence

Translation from 451 to 1566

> HL01173.hyp
MTDVSHELGALRFVVDSPLSSKVAMFNNQATQHKQSQLLNPFSQDGRAAS
PKPTFSKDQYGKPLAGSLTEMRGQKANIHVMKEMLELCQIINSEGYDVKD
EPTMRVIPFGELFNIYNYISDKVVGILLRARKHKLVDFEGEMLYQRRDDD
VPVFLLKPIKEIRSEMEAKIEDIKRAASPAPPQSTSVLMDRSAHEQKLKS
RTPSPAVGKSAKSKSASPAPKAPVPVPAPAAEVTPVAGPTTSAEPAPVAE
STMAAVPAPSTEPTPATAPASSTVEIEPAKPEVTEQAPVAVIVTEAPSTE
ETTPTTSEPQAEEAPAAVAPAGPADDLPTIVIEATAEFVRTVSVEQLAPS
PGTASESSPDQSQSQPESTPA*

HL01173.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3630-PD 371 CG3630-PD 1..371 1..371 1868 100 Plus
CG3630-PC 371 CG3630-PC 1..371 1..371 1868 100 Plus
CG3630-PA 371 CG3630-PA 1..371 1..371 1868 100 Plus
CG3630-PB 347 CG3630-PB 1..347 25..371 1752 100 Plus
CG2113-PB 179 CG2113-PB 6..179 16..190 367 41.2 Plus