Clone HL01254 Report

Search the DGRC for HL01254

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:12
Well:54
Vector:pBS SK-
Associated Gene/TranscriptCG15881-RB
Protein status:HL01254.pep: gold
Preliminary Size:1768
Sequenced Size:1664

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15881 2001-01-01 Release 2 assignment
CG15881 2001-11-09 Blastp of sequenced clone
CG15881 2003-01-01 Sim4 clustering to Release 3
CG15881 2008-04-29 Release 5.5 accounting
CG15881 2008-08-15 Release 5.9 accounting
CG15881 2008-12-18 5.12 accounting

Clone Sequence Records

HL01254.complete Sequence

1664 bp (1664 high quality bases) assembled on 2001-11-09

GenBank Submission: AY075372

> HL01254.complete
ATAATTTCCAACATTGTAAAATCAAAATTGATTATAAATTTAAAGGAAAT
ATGAAAGAATCAATTTATCAAATAGTTTATTCCGATATATCCCAGACTTA
GGGATACGACTTTAAAGATTAAACACAATATGTACAGAGTATGTATATTA
GCTTAAATTAAGTCCTACTTAATCCTGATTAACTATTCTACTCCGCCGTT
GGAACCGTATTCAGAGTAAGGCGTCGTAGCCTGCCCAATACGAAGATTTC
GTCTATAGCTTTTTTGGCATAGAATTTTTGGTCCTCGCTGAGTTTGCGGT
ACTCAAGGGACCAGGTCTGTGCATAAACATTGGACTCCTCGACCCCACTT
GCGTCGAGTGGTAGCGCGATCTCGGGAATGTCCGGAATACGGGCTGAAGC
TGCAGTGGAATCTCCGCCGCTGACCGCTTCCCCCACAAAGGCGGCAACAT
CGGCAGGAGAGGGTTTTGTTTCCAACTCATCCGACATGGATTGTTGGTCA
TCATGTTCCTCATGATGCTCCTGGTCCGTCTCCTCCTTTCTGTCGTTGGA
TTCGCCCTTGGAATTGTAGCAGCAGAATGCCTGTTTCTTGAGATACTGCA
GGTGACACCGGTGACGCCTCAGGTTCGTTGTGGATTTGTGGGTGAAGGAC
ATAATGCTCCTGCAGCCGATGCAGAACAGTACGTGCTCCAGAAAGCTACC
ATCGTCCTTCTTGATCTTGCGATACACCCGCCACACAGTGCTCCGTGTGC
TTTTGTCATTAACAGCCAATTGGTAGACGCCGGTTTCAATTTTCTCGTGA
ATATCATCGAATTTTAGCGGCATCTTGAATTATTTTGCTATTTTGTTTTG
TTTTGTTCAACTAGTCTTTATCATCCACATCGATTGTCCATAATCGTGCT
AATCGATTGCACCGCCCAGGTGGCAACCCCGATTAGAGGCACATTGCGCC
GGCAATTTTACATATATCATTTTGTTTTTATTATTTTTTAAAGTGTTTTC
TTGTTTTCCTACCTGGTTTAAATGGCGGCATTGTGCTTAGACTTTCTCGG
CTTCCAGGTGGGGGTTGGAATATTGTTGTTTGGGTTAGTAGCCGGCATAC
TAAATGGCTTTAAGTTTCCAAACAGGAGGCACTGAAGAAGATGCGAGATG
TGGACGACAAGATTATATATGCACTAAATGCCCTGCCAACGGAGTCGTTT
AAGGGTCAAGTGAACAGTGAAAGCACCTGTCGCGATCTGTACGCGAAGCT
CCAGGAGTCACACTTGGCCAGGCAAGAAAGCATACGCAGTTGCATAACAA
TTTCGGCTAGTAATCTGAAGAAGCTAAGGGAAAAGCGGGAGACCCAGCCG
GATGATGTGGATACGGATAACCAGTTTAGGGCGGAGCAGCGCAAGCTGCG
GGTTCTCCAGGCCGAGCTCAATGTCGAGGACATCATTAAAGATCGTTCCT
ACAAGACCTTCAATGAACGATGCCGGTCCTATTTTCATGCTGGCCAATAG
GTGGAACAAATGCAATGACTAGTTTTAGGTGGATTTATTAGCAGAAGTCT
CATGGAACTGCCAAGCCAGAAGGCATTTACATGCACTCCGTTGTATTACA
AGTTGTTTACAACAAGTACATAAATATAACAGTCTAAAAAGCAAAAAAAA
AAAAAAAAAAAAAA

HL01254.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15881-RB 1682 CG15881-RB 1..1647 1..1647 8220 99.9 Plus
CG34116-RA 796 CG34116-RA 1..796 856..61 3980 100 Minus
CG15881-RA 705 CG15881-RA 146..670 1123..1647 2610 99.8 Plus
CG15881-RA 705 CG15881-RA 1..149 910..1058 745 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19794558..19795829 1..1272 6330 99.8 Plus
chr3L 24539361 chr3L 19796061..19796309 1394..1642 1230 99.6 Plus
chr3L 24539361 chr3L 19795886..19796009 1272..1395 620 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:27:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19805181..19806452 1..1272 6360 100 Plus
3L 28110227 3L 19806684..19806937 1394..1647 1255 99.6 Plus
3L 28110227 3L 19806509..19806632 1272..1395 620 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19798281..19799552 1..1272 6360 100 Plus
3L 28103327 3L 19799784..19800037 1394..1647 1255 99.6 Plus
3L 28103327 3L 19799609..19799732 1272..1395 620 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:51:34 has no hits.

HL01254.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:52:20 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19794558..19795829 1..1272 99 -> Plus
chr3L 19795887..19796009 1273..1395 100 -> Plus
chr3L 19796063..19796309 1396..1642 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:11:13 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
CG15881-RA 31..411 1116..1500 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:31:03 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
CG15881-RA 31..411 1116..1500 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:35:06 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
CG15881-RA 31..411 1116..1500 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:43 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
CG15881-RA 31..411 1116..1500 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:38 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
CG15881-RA 31..411 1116..1500 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:09:19 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
CG15881-RB 1..1642 1..1642 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:31:02 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
CG15881-RB 1..1642 1..1642 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:35:06 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
CG15881-RB 1..1642 1..1642 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:43 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
CG15881-RB 1..1642 1..1642 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:38 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
CG15881-RB 1..1642 1..1642 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:52:20 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19805181..19806452 1..1272 100 -> Plus
3L 19806510..19806632 1273..1395 100 -> Plus
3L 19806686..19806932 1396..1642 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:52:20 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19805181..19806452 1..1272 100 -> Plus
3L 19806510..19806632 1273..1395 100 -> Plus
3L 19806686..19806932 1396..1642 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:52:20 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19805181..19806452 1..1272 100 -> Plus
3L 19806510..19806632 1273..1395 100 -> Plus
3L 19806686..19806932 1396..1642 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:35:06 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19798281..19799552 1..1272 100 -> Plus
arm_3L 19799610..19799732 1273..1395 100 -> Plus
arm_3L 19799786..19800032 1396..1642 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:35:07 Download gff for HL01254.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19798281..19799552 1..1272 100 -> Plus
3L 19799610..19799732 1273..1395 100 -> Plus
3L 19799786..19800032 1396..1642 100   Plus

HL01254.hyp Sequence

Translation from 1140 to 1499

> HL01254.hyp
MRDVDDKIIYALNALPTESFKGQVNSESTCRDLYAKLQESHLARQESIRS
CITISASNLKKLREKRETQPDDVDTDNQFRAEQRKLRVLQAELNVEDIIK
DRSYKTFNERCRSYFHAGQ*

HL01254.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15881-PC 119 CG15881-PC 1..119 1..119 607 100 Plus
CG15881-PB 119 CG15881-PB 1..119 1..119 607 100 Plus
CG15881-PA 136 CG15881-PA 18..136 1..119 607 100 Plus

HL01254.pep Sequence

Translation from 1140 to 1499

> HL01254.pep
MRDVDDKIIYALNALPTESFKGQVNSESTCRDLYAKLQESHLARQESIRS
CITISASNLKKLREKRETQPDDVDTDNQFRAEQRKLRVLQAELNVEDIIK
DRSYKTFNERCRSYFHAGQ*

HL01254.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23593-PA 136 GF23593-PA 18..136 1..119 550 83.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16058-PA 136 GG16058-PA 18..136 1..119 604 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14656-PA 136 GH14656-PA 18..136 1..119 547 83.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ccdc58-PC 119 CG15881-PC 1..119 1..119 607 100 Plus
Ccdc58-PB 119 CG15881-PB 1..119 1..119 607 100 Plus
Ccdc58-PA 136 CG15881-PA 18..136 1..119 607 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11642-PA 136 GI11642-PA 18..136 1..119 553 84.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15734-PA 136 GL15734-PA 18..136 1..119 519 79.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14002-PA 136 GA14002-PA 18..136 1..119 524 80.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19650-PA 136 GM19650-PA 18..136 1..119 617 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14828-PA 136 GD14828-PA 18..136 1..119 622 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11323-PA 136 GJ11323-PA 18..136 1..119 562 86.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17498-PA 137 GK17498-PA 19..137 1..119 527 79.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19624-PA 136 GE19624-PA 18..136 1..119 601 95.8 Plus