BDGP Sequence Production Resources |
Search the DGRC for HL01263
Library: | HL |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 12 |
Well: | 63 |
Vector: | pBS SK- |
Associated Gene/Transcript | SkpA-RA |
Protein status: | HL01263.pep: gold |
Preliminary Size: | 1643 |
Sequenced Size: | 1533 |
Gene | Date | Evidence |
---|---|---|
CG16983 | 2001-01-01 | Release 2 assignment |
CG16983 | 2001-11-09 | Blastp of sequenced clone |
CG16983 | 2003-01-01 | Sim4 clustering to Release 3 |
skpA | 2008-04-29 | Release 5.5 accounting |
skpA | 2008-08-15 | Release 5.9 accounting |
skpA | 2008-12-18 | 5.12 accounting |
1533 bp (1533 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069297
> HL01263.complete TTTTACGTGAGTATTGTGAATTTGGTGTGTTGATTTATATCTCAGTTGGA GCCTGCGTGGAAATAGTGTCAGTACGTTTAAAGGCATCATCGTAAGGTTA GTCGGAAAACAAATAAAAAGCCTACAAATAGCAAGCAAGAACGCTTTCGC AACCACAAGAAAAACGAACATACGCACGCATCCATCTGTGGTAGAGTCGG CTTGTGTGGGGGTGAGTGGATGTGTGGGTGAGCATTTCTGGAAAGTGCCG TTCTCTATGTTTCGATTCTACTTATCCCTTCATCACCATTTCATCGTTGA ATCATCACGAAAGAAACATCGAAAGTGCACAATCGTTTGTTATCTTTGTA CGAAAACAACGGTGATTTCCACACAGGCATAACCTGCAAGAGTAATACGA TACAAATTTTGATCTGATATGACCTCATTTTAGTCGGTTTGAATTTTAAA GAGAGCGACTCTGCAAACTGCAGGGATATGAACATACAAAATTCACAAAT GATTGTTTGCATCCTAGTTGCTTATATTCATTTACACGCATGCTTATATG CTTACATCTGTTATCAATAATTGACGACTTGGTGCATGCGAAGCAAACGC ATTGAAATGACTATTGGGATCCACACACTGTTAAAAAACACACTGATTGC ACTGCCACACATTTCTCAACTAGAACCTAATGTTTTATACTGAACTTAAC TGCAGGAAAGCCCAAAATGCCCAGCATCAAGTTGCAATCTTCGGATGAGG AGATCTTTGACACGGATATCCAGATCGCCAAGTGCTCCGGCACTATCAAG ACCATGCTGGAGGACTGCGGCATGGAGGACGATGAGAATGCCATTGTGCC GTTGCCCAATGTGAATTCGACGATTCTTCGCAAGGTGCTTACCTGGGCTC ACTACCACAAGGACGACCCCCAGCCAACGGAGGATGATGAGAGCAAGGAG AAGCGCACAGACGACATTATCTCATGGGATGCAGATTTCCTAAAAGTCGA CCAGGGCACACTGTTTGAGCTGATATTGGCAGCGAACTATCTGGACATTA AGGGCCTTCTGGAGCTCACCTGCAAGACTGTTGCAAACATGATTAAGGGA AAGACTCCCGAGGAAATACGCAAGACCTTCAACATTAAGAAGGACTTTTC GCCCGCCGAGGAGGAGCAGGTGCGCAAGGAGAACGAGTGGTGCGAGGAGA AGTAAAGCGCGGCATTTCGCGGGACCAACATTAAGTTGAAACAGCTAGGG GATTCGGGAACGAATTGGATTTGCAGCATTGCAACTTTACTTAGTTGCTA CTTTCATTTACATTTTTTTTTATTTTTAACCCCAGCAGAGACTCGATTTA AATTGTGTATAAATGATCTGTTGCTGATTTGATTCGCGGGGTTCATTTTT TGTCGTAAATATATCTCATATACATACATATGCGAGATTGTAACACTCTC TTTAACCTATTGGAGTAACACTTGATTTCACTTTAATAAATATAACTACC CAACACAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
skpA-RH | 1512 | skpA-RH | 2..1510 | 1..1509 | 7545 | 100 | Plus |
skpA.h | 1466 | skpA.h | 661..1464 | 706..1509 | 4020 | 100 | Plus |
skpA-RD | 1563 | skpA-RD | 714..1517 | 706..1509 | 4020 | 100 | Plus |
skpA.h | 1466 | skpA.h | 270..661 | 1..392 | 1960 | 100 | Plus |
skpA-RD | 1563 | skpA-RD | 323..714 | 1..392 | 1960 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 550366..551871 | 1..1506 | 7500 | 99.9 | Plus |
chr2R | 21145070 | chr2R | 8026649..8027000 | 1198..847 | 440 | 75 | Minus |
chrX | 22417052 | chrX | 19701474..19701892 | 720..1135 | 260 | 71.4 | Plus |
chrX | 22417052 | chrX | 19705119..19705231 | 1023..1135 | 250 | 81.4 | Plus |
chrX | 22417052 | chrX | 19704813..19704958 | 720..865 | 235 | 77.4 | Plus |
chr2L | 23010047 | chr2L | 17580108..17580175 | 714..781 | 235 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 656394..657902 | 1..1509 | 7545 | 100 | Plus |
2R | 25286936 | 2R | 12139446..12139797 | 1198..847 | 440 | 75 | Minus |
X | 23542271 | X | 19812810..19813228 | 720..1135 | 260 | 71.4 | Plus |
X | 23542271 | X | 19816453..19816565 | 1023..1135 | 250 | 81.4 | Plus |
X | 23542271 | X | 19816147..19816292 | 720..865 | 235 | 77.4 | Plus |
2L | 23513712 | 2L | 17581467..17581534 | 714..781 | 235 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 664492..666000 | 1..1509 | 7545 | 100 | Plus |
2R | 25260384 | 2R | 12140645..12140905 | 1198..938 | 420 | 77.3 | Minus |
X | 23527363 | X | 19824551..19824663 | 1023..1135 | 250 | 81.4 | Plus |
X | 23527363 | X | 19821218..19821326 | 1027..1135 | 245 | 81.6 | Plus |
X | 23527363 | X | 19824245..19824390 | 720..865 | 235 | 77.3 | Plus |
X | 23527363 | X | 19820908..19821053 | 720..865 | 235 | 77.3 | Plus |
2L | 23513712 | 2L | 17581467..17581534 | 714..781 | 235 | 89.7 | Plus |
X | 23527363 | X | 19831669..19831755 | 1136..1050 | 165 | 79.3 | Minus |
X | 23527363 | X | 19831958..19832088 | 850..720 | 145 | 74 | Minus |
2R | 25260384 | 2R | 12141053..12141102 | 787..738 | 145 | 86 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 550366..551871 | 1..1506 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
skpA-RC | 1..489 | 717..1205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
skpA-RC | 1..489 | 717..1205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
skpA-RD | 1..489 | 717..1205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
skpA-RC | 1..489 | 717..1205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SkpA-RA | 1..489 | 717..1205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
skpA-RH | 2..1507 | 1..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
skpA-RH | 2..1507 | 1..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
skpA-RH | 39..1544 | 1..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
skpA-RH | 2..1507 | 1..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SkpA-RH | 39..1544 | 1..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 656394..657899 | 1..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 656394..657899 | 1..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 656394..657899 | 1..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 550427..551932 | 1..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 664492..665997 | 1..1506 | 100 | Plus |
Translation from 716 to 1204
> HL01263.hyp MPSIKLQSSDEEIFDTDIQIAKCSGTIKTMLEDCGMEDDENAIVPLPNVN STILRKVLTWAHYHKDDPQPTEDDESKEKRTDDIISWDADFLKVDQGTLF ELILAANYLDIKGLLELTCKTVANMIKGKTPEEIRKTFNIKKDFSPAEEE QVRKENEWCEEK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SkpA-PI | 162 | CG16983-PI | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PH | 162 | CG16983-PH | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PA | 162 | CG16983-PA | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PD | 162 | CG16983-PD | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PG | 162 | CG16983-PG | 1..162 | 1..162 | 853 | 100 | Plus |
Translation from 716 to 1204
> HL01263.pep MPSIKLQSSDEEIFDTDIQIAKCSGTIKTMLEDCGMEDDENAIVPLPNVN STILRKVLTWAHYHKDDPQPTEDDESKEKRTDDIISWDADFLKVDQGTLF ELILAANYLDIKGLLELTCKTVANMIKGKTPEEIRKTFNIKKDFSPAEEE QVRKENEWCEEK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21176-PA | 248 | GF21176-PA | 1..162 | 1..161 | 823 | 97.5 | Plus |
Dana\GF11136-PA | 161 | GF11136-PA | 1..161 | 1..162 | 645 | 75.9 | Plus |
Dana\GF12644-PA | 161 | GF12644-PA | 1..161 | 1..162 | 632 | 75.3 | Plus |
Dana\GF11848-PA | 179 | GF11848-PA | 1..162 | 1..155 | 510 | 60.5 | Plus |
Dana\GF21823-PA | 200 | GF21823-PA | 2..139 | 4..131 | 181 | 32.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12805-PA | 162 | GG12805-PA | 1..162 | 1..162 | 845 | 99.4 | Plus |
Dere\GG22608-PA | 162 | GG22608-PA | 1..161 | 1..162 | 635 | 75.3 | Plus |
Dere\GG20030-PA | 170 | GG20030-PA | 1..161 | 1..161 | 492 | 59 | Plus |
Dere\GG19259-PA | 157 | GG19259-PA | 3..156 | 1..161 | 459 | 55.9 | Plus |
Dere\GG20001-PA | 160 | GG20001-PA | 2..140 | 4..138 | 152 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24518-PA | 162 | GH24518-PA | 1..162 | 1..162 | 820 | 95.7 | Plus |
Dgri\GH19712-PA | 162 | GH19712-PA | 1..162 | 1..162 | 819 | 95.7 | Plus |
Dgri\GH20861-PA | 162 | GH20861-PA | 1..162 | 1..162 | 626 | 74.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SkpA-PI | 162 | CG16983-PI | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PH | 162 | CG16983-PH | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PA | 162 | CG16983-PA | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PD | 162 | CG16983-PD | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PG | 162 | CG16983-PG | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PB | 162 | CG16983-PB | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PC | 162 | CG16983-PC | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PF | 162 | CG16983-PF | 1..162 | 1..162 | 853 | 100 | Plus |
SkpA-PE | 162 | CG16983-PE | 1..162 | 1..162 | 853 | 100 | Plus |
SkpB-PA | 161 | CG8881-PA | 1..161 | 1..162 | 622 | 73.5 | Plus |
SkpF-PA | 171 | CG12227-PA | 1..161 | 1..161 | 506 | 60.2 | Plus |
SkpC-PA | 158 | CG11941-PA | 4..157 | 2..155 | 445 | 59.4 | Plus |
SkpD-PA | 158 | CG12700-PA | 4..146 | 2..143 | 444 | 60.8 | Plus |
SkpE-PA | 167 | CG11942-PA | 4..156 | 2..153 | 399 | 54.9 | Plus |
CG15800-PA | 157 | CG15800-PA | 2..133 | 4..132 | 155 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15084-PA | 162 | GI15084-PA | 1..162 | 1..162 | 817 | 95.7 | Plus |
Dmoj\GI20969-PA | 162 | GI20969-PA | 1..162 | 1..162 | 639 | 76.1 | Plus |
Dmoj\GI11198-PA | 148 | GI11198-PA | 1..141 | 1..142 | 405 | 55.9 | Plus |
Dmoj\GI12503-PA | 151 | GI12503-PA | 2..146 | 4..143 | 181 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13359-PA | 162 | GL13359-PA | 1..162 | 1..162 | 841 | 98.8 | Plus |
Dper\GL13358-PA | 162 | GL13358-PA | 1..162 | 1..162 | 841 | 98.8 | Plus |
Dper\GL14141-PA | 162 | GL14141-PA | 1..162 | 1..162 | 841 | 98.8 | Plus |
Dper\GL15335-PA | 162 | GL15335-PA | 1..162 | 1..162 | 833 | 97.5 | Plus |
Dper\GL27172-PA | 164 | GL27172-PA | 1..164 | 1..162 | 679 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14255-PA | 162 | GA14255-PA | 1..162 | 1..162 | 839 | 98.1 | Plus |
Dpse\GA26756-PA | 164 | GA26756-PA | 1..164 | 1..162 | 678 | 76.8 | Plus |
Dpse\GA26757-PA | 164 | GA26757-PA | 1..164 | 1..162 | 645 | 75 | Plus |
Dpse\GA21386-PA | 162 | GA21386-PA | 1..162 | 1..162 | 632 | 76.1 | Plus |
Dpse\GA23292-PA | 132 | GA23292-PA | 27..132 | 57..162 | 552 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19084-PA | 162 | GM19084-PA | 1..162 | 1..162 | 848 | 100 | Plus |
Dsec\GM20386-PA | 161 | GM20386-PA | 1..161 | 1..162 | 622 | 74.1 | Plus |
Dsec\GM15542-PA | 170 | GM15542-PA | 1..161 | 1..161 | 482 | 59.6 | Plus |
Dsec\GM22995-PA | 168 | GM22995-PA | 16..157 | 4..144 | 385 | 55.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16521-PA | 162 | GD16521-PA | 1..162 | 1..162 | 848 | 100 | Plus |
Dsim\GD25859-PA | 161 | GD25859-PA | 1..161 | 1..162 | 624 | 74.1 | Plus |
Dsim\GD25861-PA | 128 | GD25861-PA | 3..128 | 37..162 | 515 | 76.2 | Plus |
Dsim\GD25046-PA | 170 | GD25046-PA | 1..161 | 1..161 | 482 | 59.6 | Plus |
Dsim\GD17469-PA | 157 | GD17469-PA | 16..157 | 4..144 | 358 | 52.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18891-PA | 200 | GJ18891-PA | 39..200 | 1..162 | 833 | 96.3 | Plus |
Dvir\GJ20688-PA | 162 | GJ20688-PA | 1..162 | 1..162 | 637 | 76.7 | Plus |
Dvir\GJ18483-PA | 150 | GJ18483-PA | 1..143 | 1..142 | 473 | 63.6 | Plus |
Dvir\GJ22314-PA | 140 | GJ22314-PA | 1..137 | 1..149 | 351 | 53 | Plus |
Dvir\GJ12411-PA | 159 | GJ12411-PA | 7..151 | 3..140 | 146 | 31.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16428-PA | 162 | GK16428-PA | 1..162 | 1..162 | 835 | 98.1 | Plus |
Dwil\GK21211-PA | 162 | GK21211-PA | 1..162 | 1..162 | 673 | 79 | Plus |
Dwil\GK17839-PA | 154 | GK17839-PA | 1..150 | 1..161 | 639 | 78.9 | Plus |
Dwil\GK21342-PA | 161 | GK21342-PA | 1..161 | 1..162 | 638 | 76.5 | Plus |
Dwil\GK23055-PA | 154 | GK23055-PA | 1..154 | 1..157 | 558 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\skpA-PA | 162 | GE16631-PA | 1..162 | 1..162 | 842 | 98.8 | Plus |
Dyak\GE13476-PA | 162 | GE13476-PA | 1..161 | 1..162 | 639 | 75.9 | Plus |
Dyak\GE11566-PA | 172 | GE11566-PA | 1..161 | 1..162 | 484 | 58.9 | Plus |
Dyak\GE11534-PA | 194 | GE11534-PA | 36..174 | 4..138 | 146 | 25.5 | Plus |