Clone HL01494 Report

Search the DGRC for HL01494

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:14
Well:94
Vector:pBS SK-
Associated Gene/TranscriptCG1271-RA
Protein status:HL01494.pep: gold
Preliminary Size:2001
Sequenced Size:1794

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1271 2001-01-01 Release 2 assignment
CG1271 2001-10-10 Blastp of sequenced clone
CG1271 2003-01-01 Sim4 clustering to Release 3
CG1271 2008-04-29 Release 5.5 accounting
CG1271 2008-08-15 Release 5.9 accounting
CG1271 2008-12-18 5.12 accounting

Clone Sequence Records

HL01494.complete Sequence

1794 bp (1794 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060998

> HL01494.complete
GGAAACATGTCGGCGCCTTCAAAAGTAGCAGCTAAGCCAGCAGGAGCAGC
CAAGGATTCCCAGTGTGCGGAGGAGTCGGGACCACCCGACTCACCCGCTT
TCATACTCGCCCTGGATGTTGGCACCACCTGCGTGCGGAGCTTCGTTCTG
GACGAACAATGCGAAGTCCGGGGATCGGCGGTGGATGCTGTGGAGCTACT
GAACCCGCAGCCAGGCTATTTCGAAATCGAACCCGAGAGCTTGTGGCGGA
AAATCGTTGGCGTTATAACGCAGGCAGTAAAAAATGCTCAACTGACACCA
CCGGACATCACCTGCCTGACCATCTCCACGCAGCGCTGCACGTTTCTCAC
GTGGGATCATCGCAGTGGCGAGTACTACCACAATTTCATCACCTGGAAGG
ATTTGCGCGCCGACGAGCTGGTTGACCAGTGGAATGCCAGCTGGACGAAG
AGCTCCATGAACTGGTTCTCGTATGCCCTGTTCCTTCTCACCCGCCAGTC
ACGATTCCTCGCCGGCAGCGTTCTCCAACTGATGAATGGCCAGGTCACTC
CAAGGCTACTCTTCGAGATAATGAACAACAAGAAGTTGAAGCAGGCTCTG
ATGCAGAAGAAGGCGCGCGTGGAGCTGTTGGACTCGTGGATCCTGCACAA
GCTAAGAACTGGCAGCAGTCGCGATAAGGATGTGGAGCACATAACCGATG
TGACCTCGAGTACGGCGACGGGTTTGTACGATCCGTTCACGCTCAGCTGG
TCGCCGCTTATAAGCTGGCTATTCGGCATCAATTCAAAAATCTTGCCGCG
TGTGGTGGACAACGGCTACAAGGGCTTTGGGCATGTGCATCCTACTGCCT
TCGGTCCGGATTGGGCCAACACAGAGATACCCATTGCTGCCTCTTTAAGT
GACCAAACAGCAGCCATTTGGGGCTCGCAGTGTTTCCAGAAGAACGACGT
CAAGGTCACAATGGGTACTGGTGCGTTCCTTAATCTGGTAACAGGCGATC
GTTGCCAAGCTGTCATCTCTGGCATGTATCCATTGGTGGCCTGGCAGTTC
AAGAAACCAACCAGGCAGCAGGGAGCTGTCTACTGCATTGAGGGAGCATC
CCATGACTTTGGCACCGTGGTCACTTGGGCGCAATCGTGCGAGCTCTTCG
ATAGTCCAGCGAACACCTCAGATATTGCACAGTCCGTTCCAGATACGAAC
GATGTGTTCTTCATGCCGGCCTTCAGTGGCCTGGGGCCCCCGGTGAACGA
TTATCGGTCAGCAAGTGGCTTTATTGGCCTCACTCCGTCCACCACCAAAG
CCCACATGGTGCGGGCTCTGCTCGAGAGCATAGTATTTCGTCTGGTGCAG
CTGATCGAGGCCGCTGAGAAGGAGACCTCTCAGAAGCTTCATATGATTAG
GGTTGATGGCGGCGTCTCCCGCAATGACTTCGTCTGCCAATTCCTTGCGG
ATCTCAGCCGACTGCGGGTGGAGCGGGCGGACAATGCGGAGAGCAGCATC
ATGGGAGCCACGTTCATGGCGGGCATCAACCTCGGAATCTGGCGCGATGT
GAACGATCTCAAACGTTTCCGGAAAGTGGCGCGAGTCTTTGAACCGCGTC
CCAAGGAGTACGAAACCATTGCCAACCGGATGGACAAATGGAGCCGGACG
ATTGCCCGGTTTAGTGACTGGTATTAGGTTAAACTTTTATTCTCTGTCTT
TGTTATTTGTTATTCATTAGTCACTTAGAAGGCTAGGTAGTTGGTAAATA
AAATGCTGAATTTATATAAAAAAAAAAAAAAAAAAAAAAAAAAA

HL01494.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-RA 2084 CG1271-RA 310..2077 1..1768 8840 100 Plus
CG1271-RB 2076 CG1271-RB 491..2069 190..1768 7895 100 Plus
CG1271-RC 2130 CG1271-RC 486..1697 190..1401 6060 100 Plus
CG1271-RC 2130 CG1271-RC 1752..2123 1397..1768 1860 100 Plus
CG1271-RC 2130 CG1271-RC 220..410 1..191 955 100 Plus
CG1271-RB 2076 CG1271-RB 225..415 1..191 955 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3052633..3053132 284..783 2470 99.6 Plus
chr3L 24539361 chr3L 3053190..3053642 784..1236 2190 98.9 Plus
chr3L 24539361 chr3L 3053937..3054307 1397..1767 1720 97.6 Plus
chr3L 24539361 chr3L 3052062..3052249 1..191 860 97.9 Plus
chr3L 24539361 chr3L 3053708..3053873 1236..1401 785 98.2 Plus
chr3L 24539361 chr3L 3052325..3052418 190..283 470 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:27:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3053241..3053740 284..783 2500 100 Plus
3L 28110227 3L 3053798..3054250 784..1236 2265 100 Plus
3L 28110227 3L 3054536..3054907 1397..1768 1860 100 Plus
3L 28110227 3L 3052668..3052858 1..191 955 100 Plus
3L 28110227 3L 3054316..3054481 1236..1401 830 100 Plus
3L 28110227 3L 3052934..3053027 190..283 470 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3053241..3053740 284..783 2500 100 Plus
3L 28103327 3L 3053798..3054250 784..1236 2265 100 Plus
3L 28103327 3L 3054536..3054907 1397..1768 1860 100 Plus
3L 28103327 3L 3052668..3052858 1..191 955 100 Plus
3L 28103327 3L 3054316..3054481 1236..1401 830 100 Plus
3L 28103327 3L 3052934..3053027 190..283 470 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:45:07 has no hits.

HL01494.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:46:19 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3052062..3052247 1..189 97 -> Plus
chr3L 3052325..3052418 190..283 100 -> Plus
chr3L 3052633..3053132 284..783 99 -> Plus
chr3L 3053190..3053642 784..1236 98 -> Plus
chr3L 3053709..3053872 1237..1400 98 -> Plus
chr3L 3053941..3054307 1401..1767 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:11:20 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 1..1671 7..1677 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:50 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 1..1671 7..1677 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:21:57 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 1..1671 7..1677 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:36 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 1..1671 7..1677 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:09:40 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 1..1671 7..1677 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:31:44 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 10..1776 1..1767 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:50 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 10..1776 1..1767 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:21:57 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 10..1776 1..1767 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:16:36 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 10..1776 1..1767 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:09:40 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1271-RA 10..1776 1..1767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:46:19 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3052668..3052856 1..189 100 -> Plus
3L 3052934..3053027 190..283 100 -> Plus
3L 3053241..3053740 284..783 100 -> Plus
3L 3053798..3054250 784..1236 100 -> Plus
3L 3054317..3054480 1237..1400 100 -> Plus
3L 3054540..3054906 1401..1767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:46:19 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3052668..3052856 1..189 100 -> Plus
3L 3052934..3053027 190..283 100 -> Plus
3L 3053241..3053740 284..783 100 -> Plus
3L 3053798..3054250 784..1236 100 -> Plus
3L 3054317..3054480 1237..1400 100 -> Plus
3L 3054540..3054906 1401..1767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:46:19 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3052668..3052856 1..189 100 -> Plus
3L 3052934..3053027 190..283 100 -> Plus
3L 3053241..3053740 284..783 100 -> Plus
3L 3053798..3054250 784..1236 100 -> Plus
3L 3054317..3054480 1237..1400 100 -> Plus
3L 3054540..3054906 1401..1767 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:21:57 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3052668..3052856 1..189 100 -> Plus
arm_3L 3052934..3053027 190..283 100 -> Plus
arm_3L 3053241..3053740 284..783 100 -> Plus
arm_3L 3053798..3054250 784..1236 100 -> Plus
arm_3L 3054317..3054480 1237..1400 100 -> Plus
arm_3L 3054540..3054906 1401..1767 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:53:29 Download gff for HL01494.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3053241..3053740 284..783 100 -> Plus
3L 3053798..3054250 784..1236 100 -> Plus
3L 3054317..3054480 1237..1400 100 -> Plus
3L 3054540..3054906 1401..1767 100   Plus
3L 3052668..3052856 1..189 100 -> Plus
3L 3052934..3053027 190..283 100 -> Plus

HL01494.hyp Sequence

Translation from 0 to 1676

> HL01494.hyp
GNMSAPSKVAAKPAGAAKDSQCAEESGPPDSPAFILALDVGTTCVRSFVL
DEQCEVRGSAVDAVELLNPQPGYFEIEPESLWRKIVGVITQAVKNAQLTP
PDITCLTISTQRCTFLTWDHRSGEYYHNFITWKDLRADELVDQWNASWTK
SSMNWFSYALFLLTRQSRFLAGSVLQLMNGQVTPRLLFEIMNNKKLKQAL
MQKKARVELLDSWILHKLRTGSSRDKDVEHITDVTSSTATGLYDPFTLSW
SPLISWLFGINSKILPRVVDNGYKGFGHVHPTAFGPDWANTEIPIAASLS
DQTAAIWGSQCFQKNDVKVTMGTGAFLNLVTGDRCQAVISGMYPLVAWQF
KKPTRQQGAVYCIEGASHDFGTVVTWAQSCELFDSPANTSDIAQSVPDTN
DVFFMPAFSGLGPPVNDYRSASGFIGLTPSTTKAHMVRALLESIVFRLVQ
LIEAAEKETSQKLHMIRVDGGVSRNDFVCQFLADLSRLRVERADNAESSI
MGATFMAGINLGIWRDVNDLKRFRKVARVFEPRPKEYETIANRMDKWSRT
IARFSDWY*

HL01494.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-PA 556 CG1271-PA 1..556 3..558 2927 100 Plus
CG1271-PD 539 CG1271-PD 1..539 3..558 2814 96.9 Plus
CG1271-PB 406 CG1271-PB 1..406 153..558 2126 100 Plus
CG1271-PC 384 CG1271-PC 1..315 153..467 1648 100 Plus
Gk-PF 576 CG7995-PF 36..533 38..557 440 25.9 Plus

HL01494.pep Sequence

Translation from 6 to 1676

> HL01494.pep
MSAPSKVAAKPAGAAKDSQCAEESGPPDSPAFILALDVGTTCVRSFVLDE
QCEVRGSAVDAVELLNPQPGYFEIEPESLWRKIVGVITQAVKNAQLTPPD
ITCLTISTQRCTFLTWDHRSGEYYHNFITWKDLRADELVDQWNASWTKSS
MNWFSYALFLLTRQSRFLAGSVLQLMNGQVTPRLLFEIMNNKKLKQALMQ
KKARVELLDSWILHKLRTGSSRDKDVEHITDVTSSTATGLYDPFTLSWSP
LISWLFGINSKILPRVVDNGYKGFGHVHPTAFGPDWANTEIPIAASLSDQ
TAAIWGSQCFQKNDVKVTMGTGAFLNLVTGDRCQAVISGMYPLVAWQFKK
PTRQQGAVYCIEGASHDFGTVVTWAQSCELFDSPANTSDIAQSVPDTNDV
FFMPAFSGLGPPVNDYRSASGFIGLTPSTTKAHMVRALLESIVFRLVQLI
EAAEKETSQKLHMIRVDGGVSRNDFVCQFLADLSRLRVERADNAESSIMG
ATFMAGINLGIWRDVNDLKRFRKVARVFEPRPKEYETIANRMDKWSRTIA
RFSDWY*

HL01494.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24265-PA 558 GF24265-PA 1..558 1..556 2378 78.6 Plus
Dana\GF24829-PA 576 GF24829-PA 31..533 31..555 448 26.8 Plus
Dana\GF24830-PA 552 GF24830-PA 3..504 31..555 408 26.4 Plus
Dana\GF10570-PA 540 GF10570-PA 16..524 27..555 401 26.9 Plus
Dana\GF12283-PA 596 GF12283-PA 20..543 39..555 307 22.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14901-PA 534 GG14901-PA 1..534 1..556 2642 89.6 Plus
Dere\GG14819-PA 576 GG14819-PA 31..533 31..555 438 26.8 Plus
Dere\GG14680-PA 538 GG14680-PA 16..522 24..555 417 27.8 Plus
Dere\GG20235-PA 596 GG20235-PA 49..543 68..555 332 23.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14570-PA 513 GH14570-PA 3..513 29..556 2134 72.9 Plus
Dgri\GH15761-PA 573 GH15761-PA 31..533 31..555 441 27.4 Plus
Dgri\GH15662-PA 536 GH15662-PA 2..471 17..505 425 28.4 Plus
Dgri\GH20851-PA 596 GH20851-PA 51..543 70..555 311 22.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1271-PA 556 CG1271-PA 1..556 1..556 2927 100 Plus
CG1271-PD 539 CG1271-PD 1..539 1..556 2814 96.9 Plus
CG1271-PB 406 CG1271-PB 1..406 151..556 2126 100 Plus
CG1271-PC 384 CG1271-PC 1..315 151..465 1648 100 Plus
Gk2-PF 576 CG7995-PF 36..533 36..555 440 25.9 Plus
Gk2-PA 576 CG7995-PA 36..533 36..555 440 25.9 Plus
Gk2-PB 576 CG7995-PB 36..533 36..555 440 25.9 Plus
Gk2-PD 576 CG7995-PD 36..533 36..555 440 25.9 Plus
Gk2-PE 576 CG7995-PE 36..533 36..555 440 25.9 Plus
Gk2-PC 576 CG7995-PC 36..533 36..555 440 25.9 Plus
Gk1-PA 538 CG18374-PA 2..522 17..555 420 27.8 Plus
Gk1-PB 474 CG18374-PB 27..458 100..555 388 28.2 Plus
CG8298-PC 596 CG8298-PC 49..543 68..555 336 23.5 Plus
CG8298-PA 596 CG8298-PA 49..543 68..555 336 23.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13897-PA 515 GI13897-PA 6..515 31..556 2123 73.6 Plus
Dmoj\GI12540-PA 577 GI12540-PA 31..533 31..555 446 27.4 Plus
Dmoj\GI12707-PA 535 GI12707-PA 13..519 24..555 422 27.8 Plus
Dmoj\GI20956-PA 596 GI20956-PA 51..543 70..555 321 23.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20781-PA 531 GL20781-PA 26..531 36..556 2151 76.9 Plus
Dper\GL20743-PA 576 GL20743-PA 31..533 31..555 455 28.1 Plus
Dper\GL16108-PA 474 GL16108-PA 27..458 100..555 403 28.2 Plus
Dper\GL10517-PA 596 GL10517-PA 49..543 68..555 327 24.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11767-PA 531 GA11767-PA 22..531 32..556 2166 76.7 Plus
Dpse\GA20751-PA 576 GA20751-PA 31..533 31..555 452 28 Plus
Dpse\GA14911-PA 532 GA14911-PA 13..516 32..555 416 27.5 Plus
Dpse\GA20966-PA 596 GA20966-PA 49..543 68..555 326 23.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14527-PA 537 GM14527-PA 2..537 3..556 2742 93.1 Plus
Dsec\GM14440-PA 576 GM14440-PA 31..533 31..555 432 26.6 Plus
Dsec\GM14296-PA 538 GM14296-PA 16..522 24..555 418 27.8 Plus
Dsec\GM21324-PA 596 GM21324-PA 49..543 68..555 334 23.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13724-PA 538 GD13724-PA 1..538 1..556 2738 93 Plus
Dsim\GD13534-PA 538 GD13534-PA 16..522 24..555 418 27.8 Plus
Dsim\GD13642-PA 553 GD13642-PA 31..510 31..555 382 25.5 Plus
Dsim\GD10831-PA 596 GD10831-PA 49..543 68..555 334 23.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11752-PA 515 GJ11752-PA 5..515 29..556 2130 73.5 Plus
Dvir\GJ16056-PA 577 GJ16056-PA 31..533 31..555 449 27.3 Plus
Dvir\GJ12691-PA 524 GJ12691-PA 5..508 32..555 417 28 Plus
Dvir\GJ20677-PA 596 GJ20677-PA 51..543 70..555 326 23.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12322-PA 533 GK12322-PA 16..533 28..556 2085 71.2 Plus
Dwil\GK16855-PA 536 GK16855-PA 9..520 23..555 435 28.6 Plus
Dwil\GK16636-PA 576 GK16636-PA 31..533 31..555 433 27.2 Plus
Dwil\GK19496-PA 596 GK19496-PA 49..543 68..555 338 24.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20355-PA 538 GE20355-PA 1..538 1..556 2681 91.2 Plus
Dyak\GE21182-PA 576 GE21182-PA 31..533 31..555 441 26.8 Plus
Dyak\GE21041-PA 538 GE21041-PA 19..522 32..555 412 27.2 Plus
Dyak\GE12395-PA 596 GE12395-PA 49..543 68..555 337 24.2 Plus