Clone HL01609 Report

Search the DGRC for HL01609

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:16
Well:9
Vector:pBS SK-
Associated Gene/TranscriptCG7191-RA
Protein status:HL01609.pep: gold
Preliminary Size:961
Sequenced Size:1644

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7191 2002-01-01 Sim4 clustering to Release 2
CG7191 2003-01-01 Sim4 clustering to Release 3
CG7191 2004-12-23 Blastp of sequenced clone
CG7191 2008-04-29 Release 5.5 accounting
CG7191 2008-08-15 Release 5.9 accounting
CG7191 2008-12-18 5.12 accounting

Clone Sequence Records

HL01609.complete Sequence

1644 bp (1644 high quality bases) assembled on 2004-12-23

GenBank Submission: BT021425

> HL01609.complete
CAACAGTTGACAGTATTCCGATTCTGATTCCGATTCAGTAACTCAAACGG
TTTCCAGGAATATATTTTAAAAGACATCCACATCGCCAACGACCCGCGCA
CTAATCCCGAGCTCATCCGCAGAGGCTGTATGAACATGAAGCCCGACATC
CTAGCGCTCTGCATCCTGGCTACCACGATCCTGTGCAGCAGGACGCGTCA
CGTCGCCGGCTTCCTGACTGCACAGTCCACCGCCAGCGGAGGAGCAGGCG
GAGCAAACGGTGCCAAAGTGGGTGACCATCAGGGCGTGGCGTCCGTACCA
CAACGTCTTCATTTGCCCGTTCTAGCGGTCGGGGGCGGACCCGTTCGCCA
AGGACCCGCTCTGCCCGGCGATGTCCTGGATGCCCAGGAACGAGCTGTTT
ACGATCCCGGCGATGAATTACTCCGCGCCCAGGAGCTCGGATTGGCAGTG
GTTCCTCAAGGTCCCGACTACGCGGATGCGGTGTACAACGAACTCGAGCT
GGCCAGCAAGTTCGAGGTGCTCAAGAAGATGGAGGAGGATTTGCGTGCCG
AGCAGGAGCTGGTGGACAAATCCGCTTTGCTCATGAAAATGCTGGAGGAT
CCCTCATTGGAAACCTTGCCCTTGGTCTACGTGGAGGAGGAGGAGCCGGA
GGCTGTGATTCCTTCCGGCGGAGCCGAGGACTACGCCGACTTGGAGAACG
CCGTTCAGGATTTGGTTTTGGGCCAGAGCAAATCCAAGCGTTCGCGCTAC
TATCGAAGGTATCCATGGAAGCGTCACAACAAGAATCGCGGTTCTTACAT
GAATTCTATCAACAGCAACTATGAACCGGAATTGCGTTATGCCTGCACAC
CTAGTAAGGAGGATATATTCAAGCTGCTGGTCAATCTGCACGAGAATCGC
AAGGGCAATCACAGCAAGACGGTTAACTTCTGCAATCGAAAGCGTCCGGC
CAAGGCGGTCTTCACCAACATTAGGTTCCTGGGCTAAGGCACAGGATCTG
GGATGGAAGCCATTAGCCCACACACACACAGACACAGACACGACACTGAC
AGACACATATGTATACCAAGCATCAATTGTACATTGCTGACAAAGTCGAG
CGCTAAACTGGAGAACAACAAGCACTAACAATTAGCCTAACTAATTTACT
AACTACTTAACTTAACCCGTCTAAAAGAGCTAAACGAGCTGAACTAAAAA
TACTTCGTTATCTCACTAGGGCTAGAGACCCTTGTAAGCCTCCCCTAATT
CCAATTGTAGACAATTAAAACTTTTATAACTCTCAATGTCTTGTATATAC
TAACGAAATAAACAAAGTTATAGTAGCTCGCTCCCTTTTGTTAATTTCAT
TGTGGTCGTCGCGTGTGCTAATCCAAACAATTCCAAAACGTTGCCATATC
ACTCTAAAGTCTCGTAACGTCTTCTCGGTCCATTACACTATTATTATAAT
GAGATAAATGGATCCACAATCCCCAACGCTAAATCAGTGTGTATATACGA
GAATATTGAAAATGTGTGTATTAATATATAAATGTGTACGTGTTAACTAC
TTACTAACTGAAACTATCTTTAATGTAAAGTCGAGAAGTATATATATATA
TTTCAAATAAACTTATGAAATACTAAAAAAAAAAAAAAAAAAAA

HL01609.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7191-RA 1644 CG7191-RA 20..1644 1..1625 8125 100 Plus
CG7191.a 1620 CG7191.a 810..1620 815..1625 4055 100 Plus
CG7191.a 1620 CG7191.a 20..810 1..791 3955 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7773284..7774117 791..1624 4095 99.4 Plus
chr2L 23010047 chr2L 7770345..7770688 72..415 1720 100 Plus
chr2L 23010047 chr2L 7772547..7772742 596..791 980 100 Plus
chr2L 23010047 chr2L 7772152..7772335 415..598 920 100 Plus
chr2L 23010047 chr2L 7766731..7766801 1..71 355 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:27:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7774200..7775034 791..1625 4175 100 Plus
2L 23513712 2L 7771262..7771605 72..415 1720 100 Plus
2L 23513712 2L 7773463..7773658 596..791 980 100 Plus
2L 23513712 2L 7773068..7773251 415..598 920 100 Plus
2L 23513712 2L 7767647..7767717 1..71 355 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7774200..7775034 791..1625 4175 100 Plus
2L 23513712 2L 7771262..7771605 72..415 1720 100 Plus
2L 23513712 2L 7773463..7773658 596..791 980 100 Plus
2L 23513712 2L 7773068..7773251 415..598 920 100 Plus
2L 23513712 2L 7767647..7767717 1..71 355 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:58:51 has no hits.

HL01609.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:00:04 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7766731..7766801 1..71 100 -> Plus
chr2L 7770345..7770688 72..415 100 -> Plus
chr2L 7772153..7772334 416..597 100 -> Plus
chr2L 7772549..7772742 598..791 100 -> Plus
chr2L 7773285..7774117 792..1624 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:11:29 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
CG7191-RA 1..858 130..987 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:17:02 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
CG7191-RA 1..858 130..987 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:38:33 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
CG7191-RA 1..858 130..987 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:01:27 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
CG7191-RA 1..858 130..987 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:05 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
CG7191-RA 1..858 130..987 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:16:26 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
CG7191-RA 1..1622 3..1624 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:17:02 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
CG7191-RA 1..1622 3..1624 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:38:33 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
CG7191-RA 20..1643 1..1624 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:01:28 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
CG7191-RA 1..1622 3..1624 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:05 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
CG7191-RA 20..1643 1..1624 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:00:04 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7771262..7771605 72..415 100 -> Plus
2L 7773069..7773250 416..597 100 -> Plus
2L 7767647..7767717 1..71 100 -> Plus
2L 7773465..7773658 598..791 100 -> Plus
2L 7774201..7775033 792..1624 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:00:04 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7771262..7771605 72..415 100 -> Plus
2L 7773069..7773250 416..597 100 -> Plus
2L 7767647..7767717 1..71 100 -> Plus
2L 7773465..7773658 598..791 100 -> Plus
2L 7774201..7775033 792..1624 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:00:04 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7771262..7771605 72..415 100 -> Plus
2L 7773069..7773250 416..597 100 -> Plus
2L 7767647..7767717 1..71 100 -> Plus
2L 7773465..7773658 598..791 100 -> Plus
2L 7774201..7775033 792..1624 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:38:33 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7767647..7767717 1..71 100 -> Plus
arm_2L 7771262..7771605 72..415 100 -> Plus
arm_2L 7773069..7773250 416..597 100 -> Plus
arm_2L 7773465..7773658 598..791 100 -> Plus
arm_2L 7774201..7775033 792..1624 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:37:08 Download gff for HL01609.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7773465..7773658 598..791 100 -> Plus
2L 7771262..7771605 72..415 100 -> Plus
2L 7773069..7773250 416..597 100 -> Plus
2L 7774201..7775033 792..1624 100   Plus
2L 7767647..7767717 1..71 100 -> Plus

HL01609.hyp Sequence

Translation from 129 to 986

> HL01609.hyp
MNMKPDILALCILATTILCSRTRHVAGFLTAQSTASGGAGGANGAKVGDH
QGVASVPQRLHLPVLAVGGGPVRQGPALPGDVLDAQERAVYDPGDELLRA
QELGLAVVPQGPDYADAVYNELELASKFEVLKKMEEDLRAEQELVDKSAL
LMKMLEDPSLETLPLVYVEEEEPEAVIPSGGAEDYADLENAVQDLVLGQS
KSKRSRYYRRYPWKRHNKNRGSYMNSINSNYEPELRYACTPSKEDIFKLL
VNLHENRKGNHSKTVNFCNRKRPAKAVFTNIRFLG*

HL01609.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7191-PA 285 CG7191-PA 1..285 1..285 1474 100 Plus
CG7191-PB 277 CG7191-PB 1..277 1..285 1415 97.2 Plus

HL01609.pep Sequence

Translation from 129 to 986

> HL01609.pep
MNMKPDILALCILATTILCSRTRHVAGFLTAQSTASGGAGGANGAKVGDH
QGVASVPQRLHLPVLAVGGGPVRQGPALPGDVLDAQERAVYDPGDELLRA
QELGLAVVPQGPDYADAVYNELELASKFEVLKKMEEDLRAEQELVDKSAL
LMKMLEDPSLETLPLVYVEEEEPEAVIPSGGAEDYADLENAVQDLVLGQS
KSKRSRYYRRYPWKRHNKNRGSYMNSINSNYEPELRYACTPSKEDIFKLL
VNLHENRKGNHSKTVNFCNRKRPAKAVFTNIRFLG*

HL01609.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15321-PA 301 GF15321-PA 1..301 3..285 1111 76.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10493-PA 286 GG10493-PA 1..286 1..285 1333 92.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13674-PA 278 GH13674-PA 1..278 3..285 928 64.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7191-PA 285 CG7191-PA 1..285 1..285 1474 100 Plus
CG7191-PB 277 CG7191-PB 1..277 1..285 1415 97.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17102-PA 291 GI17102-PA 1..291 3..285 851 60.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19283-PA 308 GL19283-PA 1..308 3..285 995 67 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20170-PA 300 GA20170-PA 1..300 3..285 928 64.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16550-PA 283 GM16550-PA 1..283 1..285 1450 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23485-PA 285 GD23485-PA 1..285 1..285 1482 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16141-PA 287 GJ16141-PA 1..287 3..285 852 62.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24406-PA 299 GK24406-PA 1..299 3..285 989 70.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14611-PA 285 GE14611-PA 1..285 1..285 1363 93.7 Plus