Clone HL01728 Report

Search the DGRC for HL01728

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:17
Well:28
Vector:pBS SK-
Associated Gene/TranscriptCG3967-RA
Protein status:HL01728.pep: gold
Preliminary Size:2620
Sequenced Size:2569

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3967 2001-01-01 Release 2 assignment
CG3982 2001-01-01 Release 2 assignment
CG3967 2001-10-10 Blastp of sequenced clone
CG3967 2003-01-01 Sim4 clustering to Release 3
CG3967 2008-04-29 Release 5.5 accounting
CG3967 2008-08-15 Release 5.9 accounting
CG3967 2008-12-18 5.12 accounting

Clone Sequence Records

HL01728.complete Sequence

2569 bp (2569 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061003

> HL01728.complete
CTTTCGCGCAATATCCACACGTCACGGCTACGGCCACAAATCATCCGGTT
CTTTACTCCGATTCCCAAAGCGGCGCGTATACATACACAAACAAACAAAG
CAACAAACCGCGGCGAATTACCAGGTGTGTGGAAAATACAGAAATACGAA
AGGCTCACCAGTTTTTAACGGCGTTTTTTTTGTTGGGTTCAATTTGAGAC
AAAATTCAAAATCAATAAAGCAAGACAAACCCCCCGCCCCGCCGACGCGT
GTGTGAGTGAGATACATAGTTACGACCGAATCGCAACGCGCAGCATCCGT
AAGCATCCGAAAATTGCAGCGGAAAAGCCGGAATAGTGCATTCGCCGTGC
CACTGGAAACTGGAACGCGAATCCGTGAGATATTTCGATTTCCAAGCCCA
ATCCCCCCGAGGCTGTTGTGTTTAACCGTTCCAAGCGTTGCGAGCGTTTT
AACCACATACACAAGCTTAGTGCCGTACACGGGGTCCAAAAGAACAATCG
GGGTGCAGCATAATGGTGGAATTCCGCTTCGATATTAAGCCGCTGTTCGC
GCAGCCAATCATCAAGGTGACATCCAATCTCCTGCCGAACACCTTTCGCG
GCGATCGGCGTCAGTGTTTAGATGCCACCAGCAAAATGACCGAGATCATT
GACCAGCTGGGCCAGCTGTCGGCCACCTCGCAGGGACTCAGCAAACCGGT
GACAACGGCCCAGCGCCTGAGGATGTCCGACAATCAGACCATCTATCTGC
TGGCAGATAATGAGGCGGGTCACAATGGCGCCGTCTTAGGTCTGTTGAAG
GTGGGCACCAAGAATCTCTATTTATTCGACGAAGCCGGAAAGACGCGCAT
GGTGGAGCAGACTCCATCCATTCTGGACTTCTATGTCCACGAGTCTCGTC
AGCGTGCCGGACTGGGCAAGCGTCTCTTCCAAACGATGCTCAACGAAGAG
CAGTGGACCGCACGCAAGTGCTCGGTGGATCGGCCGTCGGAAAAGCTACT
GTCCTTCCTTAGCAAGCATTACGGATTAAAGCGAATCATTCCGCAAGCGA
ACAATTTCGTGCTCTACGAGGGATTCTTTAACGATGGGGAATCGGGGAAT
GGAGGTGGTAACGGTCATGCTAACGGCACCCCGAATGGCCTGCACATCAC
AAACAGTCCTAACACACACCTCTTTGGCGCTACTTACCTGGGCGAGGATT
CTAACCAGCGACGTGGTTCGCAGCAGCAGACAACACCGAATGCACGACTG
CAGCAGATAACACAGATCTCTCCGTCCGGACGATATGGGGCTAAACGTCC
CACCTGCAGCATGGCCGAGATAATTCATGCCGGCAACTCGAAGGGCGGAA
ATGGCAATGGCAGTGCAGAAGCGAACAGTGGCAATGGTAATCACGATATT
CCAGAGATTGCCGAGCAACTGCAGCGCCAGAGCCTGGCCGACTTGGAAGC
CAACAGCTATGAGCCGGAGCCAGAAGTTGAACCGGAGCCAGAGCCTGAGC
CGGAACCCGAACCCGAACCGGAGGTGATTACGCCACCATCACCGCCGCCA
AAGAGCCACACTCCGACTCCACCATCCGTGCGATCGCCCGAGGTGGCCGA
GAGCATTGTGGGCGACAACCGGAGAGCTCCGGCTTTCCAGCTGAGCAAGC
AGCACACGGGCATGAAGAATCGCTCGTTTGGCGTCGGAATGGCCGTGATG
CCCAGCAGCAAGATGGAGTTCGATCAGATGGAGCGCGAAGATTTCGGCGT
AGTGAAGATCAACCGTCCGCCGGGTCATGAAGTCACCTCGCCGGGCCAGG
ACAATACGGATGCCATGTCCACCGTGTCCTCCGGCGGCGGCGGCCTCACC
GATCAGGGCTACTACGATCTAAAGTTCTATCACAATAAGTTGTGGTGAAG
TCGAAGTCACAAACCAGAAGGCACGCAATATTTGCTAACATCTTTTGTAC
GTGTGGCATAAGCATAATTAAACAAAAATCTAATCTAGTCTGTAAGATTG
TATTGTCTAATCAAAATAACACACCAAACGGTTCCTGTACTTCAGTTCGA
TGATTTCGTTGTGAGCTTCTTCTCCGACTTTTGTTGATTTGTTCATTTGT
TACAAGCCACGCACACCGAAGAGCATCCGTAAACTAAACTAGAGCCTCAC
AATTAAACGTTAACAATAGCAAATTGAAATATACGTAGATTAATTGCCGC
CGGTACTGAGCTAGATAATTTTACAACACATACTCGTCTTTGGTTGAAAA
GATCCTTTATTAATAATTTCGCTTTGTACTGTGAATTTGCAATAGCCCTT
AATGTTATCCAGCCCGTGTGTATCTTCCAATTACAGAAAACGAGAATATT
TCGAACAAATCTATGCCGAGTACATGCTATAGGGATAGCGCCAGTTGGCC
AGAATGCATCTTCATAACCATACTTAAAATTTCTTAAACATTGTCTAACA
TTTAGTTGATAGAACAAAACCCCCAAAATGCAAATAGATATTAAAGATGA
AGATATACAAATAAAGCACAAAATTTTGTCGACTCTATTTGCCAAGTGAA
AAAAAAAAAAAAAAAAAAA

HL01728.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3967-RC 2574 CG3967-RC 27..2574 1..2548 12740 100 Plus
CG3967-RA 2196 CG3967-RA 90..2196 442..2548 10535 100 Plus
CG3967-RE 2142 CG3967-RE 36..2142 442..2548 10535 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9405516..9406690 2548..1374 5875 100 Minus
chr3L 24539361 chr3L 9418137..9418578 442..1 2150 99.1 Minus
chr3L 24539361 chr3L 9410262..9410642 1156..776 1890 99.7 Minus
chr3L 24539361 chr3L 9411013..9411190 619..442 890 100 Minus
chr3L 24539361 chr3L 9409570..9409737 1319..1152 840 100 Minus
chr3L 24539361 chr3L 9410762..9410917 775..620 780 100 Minus
chr3L 24539361 chr3L 9407329..9407389 1378..1318 305 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:27:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9413593..9414770 2551..1374 5890 100 Minus
3L 28110227 3L 9426223..9426664 442..1 2210 100 Minus
3L 28110227 3L 9418344..9418724 1156..776 1905 100 Minus
3L 28110227 3L 9419095..9419272 619..442 890 100 Minus
3L 28110227 3L 9417652..9417819 1319..1152 840 100 Minus
3L 28110227 3L 9418844..9418999 775..620 780 100 Minus
3L 28110227 3L 9415408..9415468 1378..1318 305 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9406693..9407870 2551..1374 5890 100 Minus
3L 28103327 3L 9419323..9419764 442..1 2210 100 Minus
3L 28103327 3L 9411444..9411824 1156..776 1905 100 Minus
3L 28103327 3L 9412195..9412372 619..442 890 100 Minus
3L 28103327 3L 9410752..9410919 1319..1152 840 100 Minus
3L 28103327 3L 9411944..9412099 775..620 780 100 Minus
3L 28103327 3L 9408508..9408568 1378..1318 305 100 Minus
Blast to na_te.dros performed 2019-03-16 18:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 565..645 2436..2523 134 69.7 Plus

HL01728.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:42:20 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9410762..9410917 620..775 100 <- Minus
chr3L 9405516..9406685 1379..2548 96 <- Minus
chr3L 9407329..9407387 1320..1378 100 <- Minus
chr3L 9409570..9409732 1157..1319 100 <- Minus
chr3L 9410262..9410642 776..1156 99 <- Minus
chr3L 9411013..9411189 443..619 100 <- Minus
chr3L 9418137..9418578 1..442 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:41:46 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3967-RE 1..1386 513..1898 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:44 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3967-RE 1..1386 513..1898 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:24:01 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3967-RD 1..1386 513..1898 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:29 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3967-RE 1..1386 513..1898 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:33 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3967-RD 1..1386 513..1898 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:41:45 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3967-RC 14..2561 1..2548 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:44 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3967-RC 14..2561 1..2548 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:01 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3967-RC 14..2561 1..2548 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:16:29 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3967-RC 14..2561 1..2548 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:33 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
CG3967-RC 14..2561 1..2548 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:20 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9417652..9417814 1157..1319 100 <- Minus
3L 9413596..9414765 1379..2548 100 <- Minus
3L 9415408..9415466 1320..1378 100 <- Minus
3L 9418344..9418724 776..1156 100 <- Minus
3L 9418844..9418999 620..775 100 <- Minus
3L 9419095..9419271 443..619 100 <- Minus
3L 9426223..9426664 1..442 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:20 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9417652..9417814 1157..1319 100 <- Minus
3L 9413596..9414765 1379..2548 100 <- Minus
3L 9415408..9415466 1320..1378 100 <- Minus
3L 9418344..9418724 776..1156 100 <- Minus
3L 9418844..9418999 620..775 100 <- Minus
3L 9419095..9419271 443..619 100 <- Minus
3L 9426223..9426664 1..442 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:20 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9417652..9417814 1157..1319 100 <- Minus
3L 9413596..9414765 1379..2548 100 <- Minus
3L 9415408..9415466 1320..1378 100 <- Minus
3L 9418344..9418724 776..1156 100 <- Minus
3L 9418844..9418999 620..775 100 <- Minus
3L 9419095..9419271 443..619 100 <- Minus
3L 9426223..9426664 1..442 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:01 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9406696..9407865 1379..2548 100 <- Minus
arm_3L 9408508..9408566 1320..1378 100 <- Minus
arm_3L 9410752..9410914 1157..1319 100 <- Minus
arm_3L 9411444..9411824 776..1156 100 <- Minus
arm_3L 9411944..9412099 620..775 100 <- Minus
arm_3L 9412195..9412371 443..619 100 <- Minus
arm_3L 9419323..9419764 1..442 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:53:23 Download gff for HL01728.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9406696..9407865 1379..2548 100 <- Minus
3L 9408508..9408566 1320..1378 100 <- Minus
3L 9410752..9410914 1157..1319 100 <- Minus
3L 9411444..9411824 776..1156 100 <- Minus
3L 9411944..9412099 620..775 100 <- Minus
3L 9412195..9412371 443..619 100 <- Minus
3L 9419323..9419764 1..442 100   Minus

HL01728.pep Sequence

Translation from 512 to 1897

> HL01728.pep
MVEFRFDIKPLFAQPIIKVTSNLLPNTFRGDRRQCLDATSKMTEIIDQLG
QLSATSQGLSKPVTTAQRLRMSDNQTIYLLADNEAGHNGAVLGLLKVGTK
NLYLFDEAGKTRMVEQTPSILDFYVHESRQRAGLGKRLFQTMLNEEQWTA
RKCSVDRPSEKLLSFLSKHYGLKRIIPQANNFVLYEGFFNDGESGNGGGN
GHANGTPNGLHITNSPNTHLFGATYLGEDSNQRRGSQQQTTPNARLQQIT
QISPSGRYGAKRPTCSMAEIIHAGNSKGGNGNGSAEANSGNGNHDIPEIA
EQLQRQSLADLEANSYEPEPEVEPEPEPEPEPEPEPEVITPPSPPPKSHT
PTPPSVRSPEVAESIVGDNRRAPAFQLSKQHTGMKNRSFGVGMAVMPSSK
MEFDQMEREDFGVVKINRPPGHEVTSPGQDNTDAMSTVSSGGGGLTDQGY
YDLKFYHNKLW*

HL01728.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23734-PA 731 GF23734-PA 1..278 1..269 1133 77.4 Plus
Dana\GF23734-PA 731 GF23734-PA 550..731 285..461 689 87.4 Plus
Dana\GF20230-PA 380 GF20230-PA 1..199 1..191 574 58 Plus
Dana\GF20458-PA 384 GF20458-PA 1..198 1..191 546 55.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14042-PA 693 GG14042-PA 1..277 1..272 1281 86.6 Plus
Dere\GG14042-PA 693 GG14042-PA 502..693 270..461 799 96.4 Plus
Dere\GG18016-PA 286 GG18016-PA 1..200 1..191 574 55.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16320-PA 605 GH16320-PA 1..286 1..282 1107 77.5 Plus
Dgri\GH16320-PA 605 GH16320-PA 423..605 270..461 598 72.4 Plus
Dgri\GH24330-PA 95 GH24330-PA 3..94 41..125 162 41.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3967-PA 461 CG3967-PA 1..461 1..461 2432 100 Plus
CG3967-PE 461 CG3967-PE 1..461 1..461 2432 100 Plus
CG3967-PD 461 CG3967-PD 1..461 1..461 2432 100 Plus
CG3967-PC 461 CG3967-PC 1..461 1..461 2432 100 Plus
CG3967-PF 291 CG3967-PF 1..288 1..288 1501 100 Plus
CG3967-PB 291 CG3967-PB 1..288 1..288 1501 100 Plus
CG17003-PA 287 CG17003-PA 1..195 1..191 508 54 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13265-PA 613 GI13265-PA 1..289 1..274 1118 76.8 Plus
Dmoj\GI14817-PA 249 GI14817-PA 1..199 2..208 512 51.4 Plus
Dmoj\GI13265-PA 613 GI13265-PA 442..613 286..461 507 69.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22449-PA 779 GL22449-PA 1..293 1..290 1127 72.9 Plus
Dper\GL19954-PA 289 GL19954-PA 1..285 1..293 718 50.5 Plus
Dper\GL22449-PA 779 GL22449-PA 678..779 361..461 421 78.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24316-PA 296 GA24316-PA 1..274 1..271 1114 76.4 Plus
Dpse\GA28545-PA 289 GA28545-PA 1..285 1..293 710 49.7 Plus
Dpse\GA24318-PA 493 GA24318-PA 392..493 361..461 421 78.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24876-PA 341 GM24876-PA 150..341 270..461 1011 97.4 Plus
Dsec\GM24874-PA 218 GM24874-PA 1..162 1..162 808 93.2 Plus
Dsec\GM22698-PA 276 GM22698-PA 1..195 1..191 538 53.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12926-PA 696 GD12926-PA 1..272 1..272 1393 95.2 Plus
Dsim\GD12926-PA 696 GD12926-PA 505..696 270..461 807 97.9 Plus
Dsim\GD15558-PA 275 GD15558-PA 1..195 1..191 543 53.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12035-PA 763 GJ12035-PA 1..285 1..272 1130 76.8 Plus
Dvir\GJ12035-PA 763 GJ12035-PA 642..763 339..461 535 82.9 Plus
Dvir\GJ19480-PA 249 GJ19480-PA 1..197 2..197 523 55 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17031-PA 718 GK17031-PA 1..279 1..273 1124 78.1 Plus
Dwil\GK16341-PA 274 GK16341-PA 1..272 1..275 673 53 Plus
Dwil\GK17031-PA 718 GK17031-PA 515..718 270..461 583 64 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21245-PA 694 GE21245-PA 1..277 1..272 1281 86.3 Plus
Dyak\GE21245-PA 694 GE21245-PA 504..694 270..461 700 89.6 Plus
Dyak\GE17347-PA 283 GE17347-PA 1..200 1..191 560 54.1 Plus

HL01728.hyp Sequence

Translation from 512 to 1897

> HL01728.hyp
MVEFRFDIKPLFAQPIIKVTSNLLPNTFRGDRRQCLDATSKMTEIIDQLG
QLSATSQGLSKPVTTAQRLRMSDNQTIYLLADNEAGHNGAVLGLLKVGTK
NLYLFDEAGKTRMVEQTPSILDFYVHESRQRAGLGKRLFQTMLNEEQWTA
RKCSVDRPSEKLLSFLSKHYGLKRIIPQANNFVLYEGFFNDGESGNGGGN
GHANGTPNGLHITNSPNTHLFGATYLGEDSNQRRGSQQQTTPNARLQQIT
QISPSGRYGAKRPTCSMAEIIHAGNSKGGNGNGSAEANSGNGNHDIPEIA
EQLQRQSLADLEANSYEPEPEVEPEPEPEPEPEPEPEVITPPSPPPKSHT
PTPPSVRSPEVAESIVGDNRRAPAFQLSKQHTGMKNRSFGVGMAVMPSSK
MEFDQMEREDFGVVKINRPPGHEVTSPGQDNTDAMSTVSSGGGGLTDQGY
YDLKFYHNKLW*

HL01728.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3967-PA 461 CG3967-PA 1..461 1..461 2432 100 Plus
CG3967-PE 461 CG3967-PE 1..461 1..461 2432 100 Plus
CG3967-PD 461 CG3967-PD 1..461 1..461 2432 100 Plus
CG3967-PC 461 CG3967-PC 1..461 1..461 2432 100 Plus
CG3967-PF 291 CG3967-PF 1..288 1..288 1501 100 Plus