BDGP Sequence Production Resources |
Search the DGRC for HL01728
Library: | HL |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 17 |
Well: | 28 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG3967-RA |
Protein status: | HL01728.pep: gold |
Preliminary Size: | 2620 |
Sequenced Size: | 2569 |
Gene | Date | Evidence |
---|---|---|
CG3967 | 2001-01-01 | Release 2 assignment |
CG3982 | 2001-01-01 | Release 2 assignment |
CG3967 | 2001-10-10 | Blastp of sequenced clone |
CG3967 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3967 | 2008-04-29 | Release 5.5 accounting |
CG3967 | 2008-08-15 | Release 5.9 accounting |
CG3967 | 2008-12-18 | 5.12 accounting |
2569 bp (2569 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061003
> HL01728.complete CTTTCGCGCAATATCCACACGTCACGGCTACGGCCACAAATCATCCGGTT CTTTACTCCGATTCCCAAAGCGGCGCGTATACATACACAAACAAACAAAG CAACAAACCGCGGCGAATTACCAGGTGTGTGGAAAATACAGAAATACGAA AGGCTCACCAGTTTTTAACGGCGTTTTTTTTGTTGGGTTCAATTTGAGAC AAAATTCAAAATCAATAAAGCAAGACAAACCCCCCGCCCCGCCGACGCGT GTGTGAGTGAGATACATAGTTACGACCGAATCGCAACGCGCAGCATCCGT AAGCATCCGAAAATTGCAGCGGAAAAGCCGGAATAGTGCATTCGCCGTGC CACTGGAAACTGGAACGCGAATCCGTGAGATATTTCGATTTCCAAGCCCA ATCCCCCCGAGGCTGTTGTGTTTAACCGTTCCAAGCGTTGCGAGCGTTTT AACCACATACACAAGCTTAGTGCCGTACACGGGGTCCAAAAGAACAATCG GGGTGCAGCATAATGGTGGAATTCCGCTTCGATATTAAGCCGCTGTTCGC GCAGCCAATCATCAAGGTGACATCCAATCTCCTGCCGAACACCTTTCGCG GCGATCGGCGTCAGTGTTTAGATGCCACCAGCAAAATGACCGAGATCATT GACCAGCTGGGCCAGCTGTCGGCCACCTCGCAGGGACTCAGCAAACCGGT GACAACGGCCCAGCGCCTGAGGATGTCCGACAATCAGACCATCTATCTGC TGGCAGATAATGAGGCGGGTCACAATGGCGCCGTCTTAGGTCTGTTGAAG GTGGGCACCAAGAATCTCTATTTATTCGACGAAGCCGGAAAGACGCGCAT GGTGGAGCAGACTCCATCCATTCTGGACTTCTATGTCCACGAGTCTCGTC AGCGTGCCGGACTGGGCAAGCGTCTCTTCCAAACGATGCTCAACGAAGAG CAGTGGACCGCACGCAAGTGCTCGGTGGATCGGCCGTCGGAAAAGCTACT GTCCTTCCTTAGCAAGCATTACGGATTAAAGCGAATCATTCCGCAAGCGA ACAATTTCGTGCTCTACGAGGGATTCTTTAACGATGGGGAATCGGGGAAT GGAGGTGGTAACGGTCATGCTAACGGCACCCCGAATGGCCTGCACATCAC AAACAGTCCTAACACACACCTCTTTGGCGCTACTTACCTGGGCGAGGATT CTAACCAGCGACGTGGTTCGCAGCAGCAGACAACACCGAATGCACGACTG CAGCAGATAACACAGATCTCTCCGTCCGGACGATATGGGGCTAAACGTCC CACCTGCAGCATGGCCGAGATAATTCATGCCGGCAACTCGAAGGGCGGAA ATGGCAATGGCAGTGCAGAAGCGAACAGTGGCAATGGTAATCACGATATT CCAGAGATTGCCGAGCAACTGCAGCGCCAGAGCCTGGCCGACTTGGAAGC CAACAGCTATGAGCCGGAGCCAGAAGTTGAACCGGAGCCAGAGCCTGAGC CGGAACCCGAACCCGAACCGGAGGTGATTACGCCACCATCACCGCCGCCA AAGAGCCACACTCCGACTCCACCATCCGTGCGATCGCCCGAGGTGGCCGA GAGCATTGTGGGCGACAACCGGAGAGCTCCGGCTTTCCAGCTGAGCAAGC AGCACACGGGCATGAAGAATCGCTCGTTTGGCGTCGGAATGGCCGTGATG CCCAGCAGCAAGATGGAGTTCGATCAGATGGAGCGCGAAGATTTCGGCGT AGTGAAGATCAACCGTCCGCCGGGTCATGAAGTCACCTCGCCGGGCCAGG ACAATACGGATGCCATGTCCACCGTGTCCTCCGGCGGCGGCGGCCTCACC GATCAGGGCTACTACGATCTAAAGTTCTATCACAATAAGTTGTGGTGAAG TCGAAGTCACAAACCAGAAGGCACGCAATATTTGCTAACATCTTTTGTAC GTGTGGCATAAGCATAATTAAACAAAAATCTAATCTAGTCTGTAAGATTG TATTGTCTAATCAAAATAACACACCAAACGGTTCCTGTACTTCAGTTCGA TGATTTCGTTGTGAGCTTCTTCTCCGACTTTTGTTGATTTGTTCATTTGT TACAAGCCACGCACACCGAAGAGCATCCGTAAACTAAACTAGAGCCTCAC AATTAAACGTTAACAATAGCAAATTGAAATATACGTAGATTAATTGCCGC CGGTACTGAGCTAGATAATTTTACAACACATACTCGTCTTTGGTTGAAAA GATCCTTTATTAATAATTTCGCTTTGTACTGTGAATTTGCAATAGCCCTT AATGTTATCCAGCCCGTGTGTATCTTCCAATTACAGAAAACGAGAATATT TCGAACAAATCTATGCCGAGTACATGCTATAGGGATAGCGCCAGTTGGCC AGAATGCATCTTCATAACCATACTTAAAATTTCTTAAACATTGTCTAACA TTTAGTTGATAGAACAAAACCCCCAAAATGCAAATAGATATTAAAGATGA AGATATACAAATAAAGCACAAAATTTTGTCGACTCTATTTGCCAAGTGAA AAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 9405516..9406690 | 2548..1374 | 5875 | 100 | Minus |
chr3L | 24539361 | chr3L | 9418137..9418578 | 442..1 | 2150 | 99.1 | Minus |
chr3L | 24539361 | chr3L | 9410262..9410642 | 1156..776 | 1890 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 9411013..9411190 | 619..442 | 890 | 100 | Minus |
chr3L | 24539361 | chr3L | 9409570..9409737 | 1319..1152 | 840 | 100 | Minus |
chr3L | 24539361 | chr3L | 9410762..9410917 | 775..620 | 780 | 100 | Minus |
chr3L | 24539361 | chr3L | 9407329..9407389 | 1378..1318 | 305 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 9413593..9414770 | 2551..1374 | 5890 | 100 | Minus |
3L | 28110227 | 3L | 9426223..9426664 | 442..1 | 2210 | 100 | Minus |
3L | 28110227 | 3L | 9418344..9418724 | 1156..776 | 1905 | 100 | Minus |
3L | 28110227 | 3L | 9419095..9419272 | 619..442 | 890 | 100 | Minus |
3L | 28110227 | 3L | 9417652..9417819 | 1319..1152 | 840 | 100 | Minus |
3L | 28110227 | 3L | 9418844..9418999 | 775..620 | 780 | 100 | Minus |
3L | 28110227 | 3L | 9415408..9415468 | 1378..1318 | 305 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 9406693..9407870 | 2551..1374 | 5890 | 100 | Minus |
3L | 28103327 | 3L | 9419323..9419764 | 442..1 | 2210 | 100 | Minus |
3L | 28103327 | 3L | 9411444..9411824 | 1156..776 | 1905 | 100 | Minus |
3L | 28103327 | 3L | 9412195..9412372 | 619..442 | 890 | 100 | Minus |
3L | 28103327 | 3L | 9410752..9410919 | 1319..1152 | 840 | 100 | Minus |
3L | 28103327 | 3L | 9411944..9412099 | 775..620 | 780 | 100 | Minus |
3L | 28103327 | 3L | 9408508..9408568 | 1378..1318 | 305 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 565..645 | 2436..2523 | 134 | 69.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9410762..9410917 | 620..775 | 100 | <- | Minus |
chr3L | 9405516..9406685 | 1379..2548 | 96 | <- | Minus |
chr3L | 9407329..9407387 | 1320..1378 | 100 | <- | Minus |
chr3L | 9409570..9409732 | 1157..1319 | 100 | <- | Minus |
chr3L | 9410262..9410642 | 776..1156 | 99 | <- | Minus |
chr3L | 9411013..9411189 | 443..619 | 100 | <- | Minus |
chr3L | 9418137..9418578 | 1..442 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3967-RE | 1..1386 | 513..1898 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3967-RE | 1..1386 | 513..1898 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3967-RD | 1..1386 | 513..1898 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3967-RE | 1..1386 | 513..1898 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3967-RD | 1..1386 | 513..1898 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3967-RC | 14..2561 | 1..2548 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3967-RC | 14..2561 | 1..2548 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3967-RC | 14..2561 | 1..2548 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3967-RC | 14..2561 | 1..2548 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3967-RC | 14..2561 | 1..2548 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9417652..9417814 | 1157..1319 | 100 | <- | Minus |
3L | 9413596..9414765 | 1379..2548 | 100 | <- | Minus |
3L | 9415408..9415466 | 1320..1378 | 100 | <- | Minus |
3L | 9418344..9418724 | 776..1156 | 100 | <- | Minus |
3L | 9418844..9418999 | 620..775 | 100 | <- | Minus |
3L | 9419095..9419271 | 443..619 | 100 | <- | Minus |
3L | 9426223..9426664 | 1..442 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9417652..9417814 | 1157..1319 | 100 | <- | Minus |
3L | 9413596..9414765 | 1379..2548 | 100 | <- | Minus |
3L | 9415408..9415466 | 1320..1378 | 100 | <- | Minus |
3L | 9418344..9418724 | 776..1156 | 100 | <- | Minus |
3L | 9418844..9418999 | 620..775 | 100 | <- | Minus |
3L | 9419095..9419271 | 443..619 | 100 | <- | Minus |
3L | 9426223..9426664 | 1..442 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9417652..9417814 | 1157..1319 | 100 | <- | Minus |
3L | 9413596..9414765 | 1379..2548 | 100 | <- | Minus |
3L | 9415408..9415466 | 1320..1378 | 100 | <- | Minus |
3L | 9418344..9418724 | 776..1156 | 100 | <- | Minus |
3L | 9418844..9418999 | 620..775 | 100 | <- | Minus |
3L | 9419095..9419271 | 443..619 | 100 | <- | Minus |
3L | 9426223..9426664 | 1..442 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9406696..9407865 | 1379..2548 | 100 | <- | Minus |
arm_3L | 9408508..9408566 | 1320..1378 | 100 | <- | Minus |
arm_3L | 9410752..9410914 | 1157..1319 | 100 | <- | Minus |
arm_3L | 9411444..9411824 | 776..1156 | 100 | <- | Minus |
arm_3L | 9411944..9412099 | 620..775 | 100 | <- | Minus |
arm_3L | 9412195..9412371 | 443..619 | 100 | <- | Minus |
arm_3L | 9419323..9419764 | 1..442 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9406696..9407865 | 1379..2548 | 100 | <- | Minus |
3L | 9408508..9408566 | 1320..1378 | 100 | <- | Minus |
3L | 9410752..9410914 | 1157..1319 | 100 | <- | Minus |
3L | 9411444..9411824 | 776..1156 | 100 | <- | Minus |
3L | 9411944..9412099 | 620..775 | 100 | <- | Minus |
3L | 9412195..9412371 | 443..619 | 100 | <- | Minus |
3L | 9419323..9419764 | 1..442 | 100 | Minus |
Translation from 512 to 1897
> HL01728.pep MVEFRFDIKPLFAQPIIKVTSNLLPNTFRGDRRQCLDATSKMTEIIDQLG QLSATSQGLSKPVTTAQRLRMSDNQTIYLLADNEAGHNGAVLGLLKVGTK NLYLFDEAGKTRMVEQTPSILDFYVHESRQRAGLGKRLFQTMLNEEQWTA RKCSVDRPSEKLLSFLSKHYGLKRIIPQANNFVLYEGFFNDGESGNGGGN GHANGTPNGLHITNSPNTHLFGATYLGEDSNQRRGSQQQTTPNARLQQIT QISPSGRYGAKRPTCSMAEIIHAGNSKGGNGNGSAEANSGNGNHDIPEIA EQLQRQSLADLEANSYEPEPEVEPEPEPEPEPEPEPEVITPPSPPPKSHT PTPPSVRSPEVAESIVGDNRRAPAFQLSKQHTGMKNRSFGVGMAVMPSSK MEFDQMEREDFGVVKINRPPGHEVTSPGQDNTDAMSTVSSGGGGLTDQGY YDLKFYHNKLW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23734-PA | 731 | GF23734-PA | 1..278 | 1..269 | 1133 | 77.4 | Plus |
Dana\GF23734-PA | 731 | GF23734-PA | 550..731 | 285..461 | 689 | 87.4 | Plus |
Dana\GF20230-PA | 380 | GF20230-PA | 1..199 | 1..191 | 574 | 58 | Plus |
Dana\GF20458-PA | 384 | GF20458-PA | 1..198 | 1..191 | 546 | 55.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14042-PA | 693 | GG14042-PA | 1..277 | 1..272 | 1281 | 86.6 | Plus |
Dere\GG14042-PA | 693 | GG14042-PA | 502..693 | 270..461 | 799 | 96.4 | Plus |
Dere\GG18016-PA | 286 | GG18016-PA | 1..200 | 1..191 | 574 | 55.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16320-PA | 605 | GH16320-PA | 1..286 | 1..282 | 1107 | 77.5 | Plus |
Dgri\GH16320-PA | 605 | GH16320-PA | 423..605 | 270..461 | 598 | 72.4 | Plus |
Dgri\GH24330-PA | 95 | GH24330-PA | 3..94 | 41..125 | 162 | 41.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3967-PA | 461 | CG3967-PA | 1..461 | 1..461 | 2432 | 100 | Plus |
CG3967-PE | 461 | CG3967-PE | 1..461 | 1..461 | 2432 | 100 | Plus |
CG3967-PD | 461 | CG3967-PD | 1..461 | 1..461 | 2432 | 100 | Plus |
CG3967-PC | 461 | CG3967-PC | 1..461 | 1..461 | 2432 | 100 | Plus |
CG3967-PF | 291 | CG3967-PF | 1..288 | 1..288 | 1501 | 100 | Plus |
CG3967-PB | 291 | CG3967-PB | 1..288 | 1..288 | 1501 | 100 | Plus |
CG17003-PA | 287 | CG17003-PA | 1..195 | 1..191 | 508 | 54 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13265-PA | 613 | GI13265-PA | 1..289 | 1..274 | 1118 | 76.8 | Plus |
Dmoj\GI14817-PA | 249 | GI14817-PA | 1..199 | 2..208 | 512 | 51.4 | Plus |
Dmoj\GI13265-PA | 613 | GI13265-PA | 442..613 | 286..461 | 507 | 69.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22449-PA | 779 | GL22449-PA | 1..293 | 1..290 | 1127 | 72.9 | Plus |
Dper\GL19954-PA | 289 | GL19954-PA | 1..285 | 1..293 | 718 | 50.5 | Plus |
Dper\GL22449-PA | 779 | GL22449-PA | 678..779 | 361..461 | 421 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24316-PA | 296 | GA24316-PA | 1..274 | 1..271 | 1114 | 76.4 | Plus |
Dpse\GA28545-PA | 289 | GA28545-PA | 1..285 | 1..293 | 710 | 49.7 | Plus |
Dpse\GA24318-PA | 493 | GA24318-PA | 392..493 | 361..461 | 421 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24876-PA | 341 | GM24876-PA | 150..341 | 270..461 | 1011 | 97.4 | Plus |
Dsec\GM24874-PA | 218 | GM24874-PA | 1..162 | 1..162 | 808 | 93.2 | Plus |
Dsec\GM22698-PA | 276 | GM22698-PA | 1..195 | 1..191 | 538 | 53.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12926-PA | 696 | GD12926-PA | 1..272 | 1..272 | 1393 | 95.2 | Plus |
Dsim\GD12926-PA | 696 | GD12926-PA | 505..696 | 270..461 | 807 | 97.9 | Plus |
Dsim\GD15558-PA | 275 | GD15558-PA | 1..195 | 1..191 | 543 | 53.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12035-PA | 763 | GJ12035-PA | 1..285 | 1..272 | 1130 | 76.8 | Plus |
Dvir\GJ12035-PA | 763 | GJ12035-PA | 642..763 | 339..461 | 535 | 82.9 | Plus |
Dvir\GJ19480-PA | 249 | GJ19480-PA | 1..197 | 2..197 | 523 | 55 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17031-PA | 718 | GK17031-PA | 1..279 | 1..273 | 1124 | 78.1 | Plus |
Dwil\GK16341-PA | 274 | GK16341-PA | 1..272 | 1..275 | 673 | 53 | Plus |
Dwil\GK17031-PA | 718 | GK17031-PA | 515..718 | 270..461 | 583 | 64 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21245-PA | 694 | GE21245-PA | 1..277 | 1..272 | 1281 | 86.3 | Plus |
Dyak\GE21245-PA | 694 | GE21245-PA | 504..694 | 270..461 | 700 | 89.6 | Plus |
Dyak\GE17347-PA | 283 | GE17347-PA | 1..200 | 1..191 | 560 | 54.1 | Plus |
Translation from 512 to 1897
> HL01728.hyp MVEFRFDIKPLFAQPIIKVTSNLLPNTFRGDRRQCLDATSKMTEIIDQLG QLSATSQGLSKPVTTAQRLRMSDNQTIYLLADNEAGHNGAVLGLLKVGTK NLYLFDEAGKTRMVEQTPSILDFYVHESRQRAGLGKRLFQTMLNEEQWTA RKCSVDRPSEKLLSFLSKHYGLKRIIPQANNFVLYEGFFNDGESGNGGGN GHANGTPNGLHITNSPNTHLFGATYLGEDSNQRRGSQQQTTPNARLQQIT QISPSGRYGAKRPTCSMAEIIHAGNSKGGNGNGSAEANSGNGNHDIPEIA EQLQRQSLADLEANSYEPEPEVEPEPEPEPEPEPEPEVITPPSPPPKSHT PTPPSVRSPEVAESIVGDNRRAPAFQLSKQHTGMKNRSFGVGMAVMPSSK MEFDQMEREDFGVVKINRPPGHEVTSPGQDNTDAMSTVSSGGGGLTDQGY YDLKFYHNKLW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3967-PA | 461 | CG3967-PA | 1..461 | 1..461 | 2432 | 100 | Plus |
CG3967-PE | 461 | CG3967-PE | 1..461 | 1..461 | 2432 | 100 | Plus |
CG3967-PD | 461 | CG3967-PD | 1..461 | 1..461 | 2432 | 100 | Plus |
CG3967-PC | 461 | CG3967-PC | 1..461 | 1..461 | 2432 | 100 | Plus |
CG3967-PF | 291 | CG3967-PF | 1..288 | 1..288 | 1501 | 100 | Plus |