HL01742.complete Sequence
4588 bp (4588 high quality bases) assembled on 2003-08-11
GenBank Submission: BT011064
> HL01742.complete
AAGAAGTAGATTGTGCTCTTATGAACGGGAATGAAGGAGCATTTCGGAGC
AATATCCATACAAAAGAACAACAATGAATTGAAGGGCTTTGGTTGGTGGT
TGGTGGGGGGGAAATGTGAAATTGATATTGATATTATGCAATGTTGTCCC
GCAAATGAATCGAATCGAATGGGAATCGGAGCGAAACGAAACGAAACGAA
AAACCCAAACGATGAGAGTCGATTTTACGAGCCTTAAACATGACACTGAA
ATGAACTTTTTTTTCAAACGGAGGCTTCTTCAGCCAAGTGGATGTGGATG
TGGATATGGATGTGGATATGAATGTGGATATGGATGTGGATGTGGATGTG
CGAATGCATACGCAGATTTTTACGACATTTTGTTAGCGGATTCAGTGGGT
CTCGTATTCGAATTCGCATTCGCAGTGCGAATGGCCAGGGAAATGGATCG
AATCGGTTTGGATCAAAACGAATCGGACAGGATTTCCGCTGTCATCGGGA
CCATAGATGCGTCCGCCAGATTATTATAAGTTGATCACACTGCAATCGCT
AGTTTCTCTTCCTTAAATTTTTGGATTTTTTCTTTTGCCTGCAGTTTTAG
GATGCAATCTGTTTGAACGAATGCCGTGGAAAATGCCAACGGAATGATCT
CATTTTCCCTTTTGTTCAAACGAGCGACGTTGTTTTCCAATGCCTGAAAT
GTTGGCCTTCTAATTTACCATCGAATTGAGTTGCTCACTGGCATTCATGA
CACCATTCATGAATATGATGATTTTGCTGGGCTGCAAAGTTGAAATTTAA
TTTCGACTGTGTGCAAGTCTCTGCTCCTTTCGCCTGTCTTCGCTGTTTGT
TTGTTAATAATGTAAGCGTTTTAATATTTAATATTGCGCATACGACATGT
TGCGCCAGCTTTTTTTTTGGAGCTGACATTTAAATGAATTTTCAATAATT
TCGCTGTCGGTTTTTTGGCAGCCGATAGAGTTGTTGTTGCTGTTGCTGTT
AGGTTGGGAAAGCACCACCAACAAGCACTTAACGCCTAGAAAGGACCTTT
ATACCAGTGCCCGCATCCACAAGGATATCACACACCCATTCCATTTTCGG
TGGCGCAACCTACTGACGAAAATGCCATTTGTGCAAATCTAATAAACAGC
GAACCGCATTAAATTTGACAGTGAGGTGTGGGAGGTGTTCAGGGCAGAAT
GGATATATATATATAAAATAATATATATATATATGTGTGTGTGTGTTCAG
GGAGAATCGTGTCTCTGGGAAAACGTGTCAATTGAGCGGCGTTTTGGGAA
AATGGGCGCAAATGCGTCCTGGTGGGCGGCACAATGGCCCAACTTTCATT
ACGGCATCCGCAACGAATCCTTTGGCCAAATATAGACTAACTTACTTGAT
ACCGTGTTTTATAAAGTATTTATATATATATATATATACAATATATTTCT
TTATTATTTATACATCAATGGCATTAGTGATTTTCCTTCTTTTCTCTTAC
ACCATTAAACCTTAAAAACTGATTTATTATCATATACTCCACAAAGACTG
TCGCATCTTGTGGCATAAATCAAAACTGCCCCATGTCCGTGCAACCAAAA
GCTGCCAAAGACATTCGATCGAAGCGGTGGAGAAATAAGAAAATATTGCT
TTCTTTTTCGTGTTTCTTTAAAATCCGCAGCCAACTGGTGAATATATGAC
ACATTTCGCCTTTGGGATTTGCTGGCGAAGGACGCGTTTCGCATTCGCAT
TCGCACTCGCTTTCGTTTTCGTTTTCGTTTTCCCCATCCGCAGTTCGCCA
TTTTCCGTTGGTGTGTGGTGTGTGTGTAGTTTAGGCCAAATTAACATATC
ACACAGGCCGCAGCGTCCTTGGATCCTCTGCACCTTCTCCGCTTGACTTG
TCACTTTGAGATGCGTCCCCGTGGCCTCTGTGTCAGTATTTGTCATACAG
ATGGCGGCAAGCCATTAGTTCTATAAAAAAAAATATATTAAATATTAAAG
TAAATATTCATTTTAGAGCTCTTTTTTTTTGCATGCTTTTAGATACTTAT
TTTTAATTTTTTTTTTTTTAGTTTTGAATAGATAAACCTACTTTTGTGAC
CGCCACTGTGCAATCCAAATAGGCCTAGGCGATGGCCCATTGACTGCCAA
CCATTTGGATGGCGTTGCAGTCAAGTTCTGTGCGGCTTCGTTCTCCTTTT
CGGCCGTCATGGTTCATATCGCGTTTTTGACGCTGCCTCTGAAATATTCT
GAATGTCATGCGGGGGATCCACAAAAGGTGAACCAATTTTCGCGAAATTG
TCTGCGAAAAAAACGATGAATCTCAGATTGGGCCATTTTTTTTTTTTTTT
GCGGCAAGCAGCATCATTAAATGTTTGAAGATCTTTAAAATATTAAGAGC
ATTCTGCATACATTACATGACGGCAGTGAGTCAAGGGAAAATTCATCAAA
TTATCTTAAGATGTCTAAAGTTAATTGGCTGCACATATTGAAATTTAAAC
TTAAATATTCTGTGTATATTGTTAACAGAATTTTGGAGTACTTTGTTCTT
AGAAAAGCAATTTAAGTTCATGCAGCAAGTTCTCATTCCAGGAATTTAGA
TGTGCCAAAGTGCATTTGTAGGATGTTTGTTGTACATGTATATATATATG
TATATATATATATATGCACATATGAGCCCACGCATTCAGCCATTTCATTT
CGACATACGACGATAAGCAGGACGAAGTTTGCAACTTGCAATTCCTGCAA
TTCCTCGGCTGCTCCTTTGTTCTAATCAATGTCCGATTGAGTGGCGATGT
GTGCACTCGGAAAACCCTATACAATATATATATATATATATCCTATACAA
TATATATATATATATATATATATAAAATAATCAATATTAAGCCATTGGTC
ATGTTCAAATGTGCTAAAAAATTACAAAAAATAGTCTTCGAATTCCAAGT
AGTTTCCTAAAAACTCCTTAATATTCATCAAGAGCTCGCCAATTTTCTGA
AGTTACTGCTCAAGAAAAAGTAACAAAAAGCCAATCCGATTTTGGGCGTT
CAATGTGGCTCCTTCTAATCGCATTTCATTTTTTTCTGTGAGAAATGATT
CATTGTTCTCGTTGAATGCAGGTAATAATATTTTTTTTTTTTTGTATTAT
CCTCCATGGACATTTGTTTTTTTTGTTTCCATTGAGCCGGGGAAACCCCG
CCTGCGTTTTCTTTCTGATTTGTTTGATTGCTGTTGCTGTTGTTTTTTTG
TGTTTTTTGTTGTTATTTTTGTGTTTGTTGGTGGTGCAATTGCTGGTACG
ATACGACTGGCAGACAATAAAGAGCATTTCATTTGAATAATGCGAAAACA
TTTTGCTAGACGCCCGCTGCCATTGTCTAGCAGCCCATAATTTCCACCCA
AAACGCCAAACGCCCAACGATGCCTGCCTCTTGTGCTCTTTAAACTGCTC
AACTGACATGCCGATTGCTTTTGTCTGCACACCTATATCTGTCAAATACA
CCTCCGTACACTCGAGTCTGATTGCCCCTTGATGGACAGGACAGGAGAGT
TCAGCTCAGCTCAGCTCAGTTCAGTTCAGTTCAGTTCAGTTCAGGGGGCG
GCAGTGGGTATATTTGGTCATCGGAAATTGTCGATGGGTGGATAGCACAG
TCACAGTCCGTTGTCCTGACTTTATGTTCCCCTTGGACTGATGAAACTTT
AACTGGGGAAACTCCACATAGAATTGCAATACAAAGCTGATTATCGGTAG
TATCGATACGTTTGATATTTGCTTGTCGATAGACATGAAATATAGATCAA
ATATGGCTGACCTAATTACTTCCTCATTTAAGTAACTAAATGGTCCCGTC
AATTGAATGAACAGTTCACTATTTCGTTTCTTTTGTCTTAAACTATGAAA
ATCGATTATTTCGATAAGTGTACAGTTTTCACAATTGGTTATCGATTGCT
CAGGCAGGCAGACGCAACGCTGACCAATTTCCACGGTAATTGCAGCGCAC
TCATTGACGGACAGGTCGTAGATGCCTTTTTCAAATAATGTCTACTTCGT
TGCCTTGCTTCGAACCAATTTGAAGACCTCCTTGTTTCTCCTTGCCGTTT
CCTTCCTCTGCTGCAATTGTGCGCCGTTTTTGGCGCCCAAACTTTGGTGT
GCCTCGCCTGAAAGTATGCCACATTGCCCGTGACGAGGAGATTATTGCTA
TTGTCGTATCAATTGGAGTACACCCCAACAGCCTAGCAAGGAAGCTAGGA
ACTGCAGCTGTGGTCAATGCTGACCCTCGGACTAGAGTCAAAAGAAGACT
CAAGCGACACCACCCTCATGACCTCCCTAACCTGGTTTTGACCTAGAAAG
TCTTAGTTTTAAAATTCATTAGAATAATCAAATAAATAATAATTACTATG
TTATATCAACTATTATAATTCTCCCTATCATTTTTAGGATTAAAAATCTG
TTAGTCTTAAGTAACCAAGACACATTGTAAAATAAAATAATTTAAGCAGA
TCAAATTAAGTTGCCGCATGGGTAACAGTGCGTTGATCAAATAATAAAAA
CATCATCGTAATGGAAAAAAAAAAAAAAAAAAAAAAAA
HL01742.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ctp.b | 4192 | ctp.b | 2608..2889 | 4588..4307 | 1320 | 97.8 | Minus |
| CG6191-RA | 3636 | CG6191-RA | 3380..3633 | 4308..4561 | 1270 | 100 | Plus |
| ctp.a | 2706 | ctp.a | 2608..2706 | 4588..4490 | 420 | 94.9 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chrX | 22417052 | chrX | 8809833..8814411 | 1..4564 | 22435 | 99.6 | Plus |
| chr3L | 24539361 | chr3L | 12865368..12865713 | 4563..4218 | 1730 | 100 | Minus |
| chrX | 22417052 | chrX | 9401003..9401347 | 4218..4562 | 1725 | 100 | Plus |
| chrX | 22417052 | chrX | 21965687..21966031 | 4218..4562 | 1725 | 100 | Plus |
| chr3L | 24539361 | chr3L | 11323387..11323731 | 4218..4562 | 1725 | 100 | Plus |
| chr3L | 24539361 | chr3L | 15889237..15889581 | 4218..4562 | 1725 | 100 | Plus |
| chrU | 10048995 | chrU | 9551244..9551588 | 4562..4218 | 1725 | 100 | Minus |
| chr4 | 1351717 | chr4 | 435397..435741 | 4562..4218 | 1725 | 100 | Minus |
| chr3LHet | 2555433 | chr3LHet | 57185..57529 | 4562..4218 | 1725 | 100 | Minus |
| chr2L | 23010047 | chr2L | 13480195..13480539 | 4562..4218 | 1725 | 100 | Minus |
| chrX | 22417052 | chrX | 7372789..7373132 | 4561..4218 | 1720 | 100 | Minus |
| chrX | 22417052 | chrX | 20951375..20951718 | 4561..4218 | 1720 | 100 | Minus |
| chr3L | 24539361 | chr3L | 3474528..3474871 | 4218..4561 | 1720 | 100 | Plus |
| chr2L | 23010047 | chr2L | 4917341..4917684 | 4561..4218 | 1720 | 100 | Minus |
| chr3R | 27901430 | chr3R | 25230188..25230531 | 4218..4561 | 1720 | 100 | Plus |
| chr2R | 21145070 | chr2R | 15666769..15667112 | 4218..4561 | 1720 | 100 | Plus |
| chrX | 22417052 | chrX | 16825647..16825989 | 4218..4560 | 1715 | 100 | Plus |
| chr2R | 21145070 | chr2R | 18246985..18247327 | 4219..4561 | 1715 | 100 | Plus |
| chr3L | 24539361 | chr3L | 939648..939992 | 4562..4218 | 1710 | 99.7 | Minus |
| chr3L | 24539361 | chr3L | 16483804..16484148 | 4562..4218 | 1710 | 99.7 | Minus |
| chr2L | 23010047 | chr2L | 9392503..9392847 | 4562..4218 | 1710 | 99.7 | Minus |
| chr3R | 27901430 | chr3R | 9342415..9342759 | 4562..4218 | 1710 | 99.7 | Minus |
| chr2R | 21145070 | chr2R | 18236331..18236675 | 4562..4218 | 1710 | 99.7 | Minus |
| chr2R | 21145070 | chr2R | 18412381..18412725 | 4562..4218 | 1710 | 99.7 | Minus |
| chr2L | 23010047 | chr2L | 20890164..20890507 | 4561..4218 | 1705 | 99.7 | Minus |
| chr3R | 27901430 | chr3R | 2340485..2340825 | 4218..4558 | 1705 | 100 | Plus |
| chr3R | 27901430 | chr3R | 24078421..24078761 | 4221..4561 | 1705 | 100 | Plus |
| chr3R | 27901430 | chr3R | 24125123..24125466 | 4561..4218 | 1705 | 99.7 | Minus |
| chr3R | 27901430 | chr3R | 24620586..24620929 | 4218..4561 | 1705 | 99.7 | Plus |
| chr3R | 27901430 | chr3R | 26303066..26303406 | 4556..4216 | 1705 | 100 | Minus |
| chr2R | 21145070 | chr2R | 8711449..8711792 | 4218..4561 | 1705 | 99.7 | Plus |
| chr2R | 21145070 | chr2R | 14245559..14245899 | 4558..4218 | 1705 | 100 | Minus |
| chrX | 22417052 | chrX | 1416697..1417036 | 4218..4557 | 1700 | 100 | Plus |
| chrX | 22417052 | chrX | 5231364..5231703 | 4557..4218 | 1700 | 100 | Minus |
| chr2L | 23010047 | chr2L | 52181..52520 | 4218..4557 | 1700 | 100 | Plus |
| chr3R | 27901430 | chr3R | 10072382..10072721 | 4218..4557 | 1700 | 100 | Plus |
| chrX | 22417052 | chrX | 13321039..13321377 | 4218..4556 | 1695 | 100 | Plus |
| chr3L | 24539361 | chr3L | 5994399..5994737 | 4556..4218 | 1695 | 100 | Minus |
| chr2L | 23010047 | chr2L | 14888784..14889122 | 4557..4219 | 1695 | 100 | Minus |
| chr2L | 23010047 | chr2L | 19619232..19619576 | 4218..4562 | 1695 | 99.4 | Plus |
| chr2R | 21145070 | chr2R | 13034491..13034829 | 4556..4218 | 1695 | 100 | Minus |
| chrX | 22417052 | chrX | 4624726..4625069 | 4561..4218 | 1690 | 99.4 | Minus |
| chrX | 22417052 | chrX | 19360975..19361318 | 4561..4218 | 1690 | 99.4 | Minus |
| chr3L | 24539361 | chr3L | 9211249..9211592 | 4561..4218 | 1690 | 99.4 | Minus |
| chr2R | 21145070 | chr2R | 18661544..18661880 | 4221..4557 | 1685 | 100 | Plus |
| chrX | 22417052 | chrX | 4685223..4685561 | 4561..4223 | 1680 | 99.7 | Minus |
| chrU | 10048995 | chrU | 6623656..6624001 | 4218..4562 | 1680 | 99.7 | Plus |
| chr4 | 1351717 | chr4 | 434610..434948 | 4556..4218 | 1680 | 99.7 | Minus |
| chr2R | 21145070 | chr2R | 6907500..6907838 | 4556..4218 | 1680 | 99.7 | Minus |
| chr3L | 24539361 | chr3L | 9567817..9568154 | 4555..4218 | 1675 | 99.7 | Minus |
| chr2R | 21145070 | chr2R | 13164298..13164640 | 4218..4560 | 1670 | 99.1 | Plus |
| chrU | 10048995 | chrU | 8001430..8001764 | 4556..4222 | 1660 | 99.7 | Minus |
| chr3R | 27901430 | chr3R | 19895540..19895884 | 4561..4218 | 1660 | 99.4 | Minus |
| chr2R | 21145070 | chr2R | 3127903..3128240 | 4218..4555 | 1660 | 99.4 | Plus |
| chrU | 10048995 | chrU | 9564015..9564359 | 4218..4562 | 1650 | 98.6 | Plus |
| chr3R | 27901430 | chr3R | 5145357..5145695 | 4218..4555 | 1630 | 99.4 | Plus |
| chrX | 22417052 | chrX | 7594893..7595233 | 4218..4561 | 1565 | 97.7 | Plus |
| chr3L | 24539361 | chr3L | 21743099..21743405 | 4529..4223 | 1535 | 100 | Minus |
| chr3R | 27901430 | chr3R | 22465864..22466165 | 4261..4562 | 1495 | 99.7 | Plus |
| chr2L | 23010047 | chr2L | 14617611..14617931 | 4557..4218 | 1350 | 93.8 | Minus |
| chr3L | 24539361 | chr3L | 5530399..5530654 | 4562..4307 | 1280 | 100 | Minus |
| chr3L | 24539361 | chr3L | 18998493..18998748 | 4307..4562 | 1280 | 100 | Plus |
| chrX | 22417052 | chrX | 17320825..17321079 | 4562..4308 | 1275 | 100 | Minus |
| chr2L | 23010047 | chr2L | 1618182..1618436 | 4562..4308 | 1275 | 100 | Minus |
| chr2R | 21145070 | chr2R | 13932861..13933115 | 4308..4562 | 1275 | 100 | Plus |
| chr3R | 27901430 | chr3R | 25142634..25142887 | 4309..4562 | 1270 | 100 | Plus |
| chr2R | 21145070 | chr2R | 9467890..9468143 | 4561..4308 | 1270 | 100 | Minus |
| chrX | 22417052 | chrX | 1417055..1417305 | 4557..4307 | 1255 | 100 | Minus |
| chrX | 22417052 | chrX | 13292321..13292570 | 4308..4557 | 1250 | 100 | Plus |
| chr3L | 24539361 | chr3L | 9563851..9564103 | 4561..4309 | 1250 | 99.6 | Minus |
| chrX | 22417052 | chrX | 4593269..4593520 | 4558..4307 | 1245 | 99.6 | Minus |
| chr3R | 27901430 | chr3R | 25475733..25475982 | 4557..4308 | 1235 | 99.6 | Minus |
| chr2R | 21145070 | chr2R | 10892077..10892314 | 4561..4325 | 1140 | 99.6 | Minus |
| chrX | 22417052 | chrX | 7676251..7676464 | 4550..4337 | 1070 | 100 | Minus |
| chr3R | 27901430 | chr3R | 4533436..4533600 | 4557..4393 | 825 | 100 | Minus |
| chr3L | 24539361 | chr3L | 21738335..21738378 | 4562..4519 | 220 | 100 | Minus |
| chr3LHet | 2555433 | chr3LHet | 2267568..2267638 | 4299..4229 | 190 | 84.5 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:27:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8918165..8922755 | 1..4588 | 22825 | 99.9 | Plus |
| 3L | 28110227 | 3L | 12874993..12875363 | 4588..4218 | 1840 | 99.7 | Minus |
| X | 23542271 | X | 9509271..9509641 | 4218..4588 | 1825 | 99.5 | Plus |
| 3L | 28110227 | 3L | 11332522..11332891 | 4218..4587 | 1820 | 99.5 | Plus |
| X | 23542271 | X | 21086191..21086561 | 4588..4218 | 1810 | 99.2 | Minus |
| X | 23542271 | X | 22569721..22570091 | 4218..4588 | 1810 | 99.2 | Plus |
| 3L | 28110227 | 3L | 3475136..3475506 | 4218..4588 | 1810 | 99.2 | Plus |
| 4 | 1348131 | 4 | 414815..415185 | 4588..4218 | 1810 | 99.2 | Minus |
| 2R | 25286936 | 2R | 19779541..19779910 | 4218..4587 | 1805 | 99.2 | Plus |
| 3L | 28110227 | 3L | 15899396..15899768 | 4218..4588 | 1800 | 99.5 | Plus |
| 2R | 25286936 | 2R | 22349748..22350115 | 4585..4218 | 1795 | 99.2 | Minus |
| Y | 3667352 | Y | 718541..718905 | 4582..4218 | 1795 | 99.5 | Minus |
| 3R | 32079331 | 3R | 28302164..28302534 | 4588..4218 | 1795 | 98.9 | Minus |
| 2L | 23513712 | 2L | 20891602..20891972 | 4588..4218 | 1795 | 98.9 | Minus |
| 2R | 25286936 | 2R | 22360441..22360810 | 4219..4588 | 1790 | 98.9 | Plus |
| 2R | 25286936 | 2R | 18358449..18358817 | 4586..4218 | 1785 | 98.9 | Minus |
| X | 23542271 | X | 5338770..5339140 | 4588..4218 | 1780 | 98.7 | Minus |
| 3L | 28110227 | 3L | 9219318..9219688 | 4588..4218 | 1780 | 98.7 | Minus |
| 3R | 32079331 | 3R | 13517284..13517654 | 4588..4218 | 1780 | 98.7 | Minus |
| 3R | 32079331 | 3R | 28255475..28255842 | 4221..4588 | 1780 | 98.9 | Plus |
| 3R | 32079331 | 3R | 28797583..28797953 | 4218..4588 | 1780 | 98.7 | Plus |
| 2L | 23513712 | 2L | 19620712..19621078 | 4218..4584 | 1775 | 98.9 | Plus |
| X | 23542271 | X | 4792436..4792801 | 4588..4223 | 1770 | 98.9 | Minus |
| X | 23542271 | X | 7480833..7481201 | 4586..4218 | 1770 | 98.6 | Minus |
| 2R | 25286936 | 2R | 22525809..22526179 | 4588..4218 | 1765 | 98.4 | Minus |
| X | 23542271 | X | 13430230..13430600 | 4218..4588 | 1750 | 98.1 | Plus |
| 3R | 32079331 | 3R | 24072148..24072519 | 4588..4218 | 1750 | 98.7 | Minus |
| 2L | 23513712 | 2L | 14890010..14890374 | 4582..4218 | 1750 | 98.6 | Minus |
| U | 3151297 | U | 2156222..2156592 | 4218..4588 | 1750 | 98.1 | Plus |
| X | 23542271 | X | 4731876..4732239 | 4581..4218 | 1745 | 98.6 | Minus |
| 2R | 25286936 | 2R | 11019936..11020305 | 4587..4218 | 1745 | 98.1 | Minus |
| 3L | 28110227 | 3L | 16494032..16494400 | 4586..4218 | 1740 | 98.1 | Minus |
| 4 | 1348131 | 4 | 414022..414392 | 4588..4218 | 1735 | 97.8 | Minus |
| 2L | 23513712 | 2L | 13481503..13481855 | 4570..4218 | 1735 | 99.4 | Minus |
| 3R | 32079331 | 3R | 30480534..30480896 | 4578..4216 | 1725 | 98.3 | Minus |
| Ymm | 880023 | Ymm | 831718..832078 | 4218..4577 | 1725 | 99.2 | Plus |
| 3R | 32079331 | 3R | 29407525..29407868 | 4218..4561 | 1720 | 100 | Plus |
| 2L | 23513712 | 2L | 52181..52558 | 4218..4588 | 1720 | 97.6 | Plus |
| 2L | 23513712 | 2L | 4918228..4918571 | 4561..4218 | 1720 | 100 | Minus |
| X | 23542271 | X | 16936065..16936407 | 4218..4560 | 1715 | 100 | Plus |
| 3R | 32079331 | 3R | 6514744..6515098 | 4218..4572 | 1715 | 98.9 | Plus |
| 3L | 28110227 | 3L | 939832..940176 | 4562..4218 | 1710 | 99.7 | Minus |
| 2L | 23513712 | 2L | 9393566..9393910 | 4562..4218 | 1710 | 99.7 | Minus |
| 2R | 25286936 | 2R | 12824163..12824506 | 4218..4561 | 1705 | 99.7 | Plus |
| 2R | 25286936 | 2R | 17147298..17147656 | 4576..4218 | 1705 | 98.3 | Minus |
| 3R | 32079331 | 3R | 14247511..14247882 | 4218..4587 | 1705 | 97.8 | Plus |
| X | 23542271 | X | 1522826..1523165 | 4218..4557 | 1700 | 100 | Plus |
| 2R | 25286936 | 2R | 7240537..7240903 | 4218..4584 | 1700 | 97.5 | Plus |
| 3L | 28110227 | 3L | 6001785..6002123 | 4556..4218 | 1695 | 100 | Minus |
| X | 23542271 | X | 19472192..19472535 | 4561..4218 | 1690 | 99.4 | Minus |
| 2R | 25286936 | 2R | 22775024..22775360 | 4221..4557 | 1685 | 100 | Plus |
| 3R | 32079331 | 3R | 9319632..9320001 | 4218..4588 | 1685 | 97.6 | Plus |
| 3L | 28110227 | 3L | 9575985..9576322 | 4555..4218 | 1675 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17277277..17277619 | 4218..4560 | 1670 | 99.1 | Plus |
| X | 23542271 | X | 7702963..7703330 | 4218..4588 | 1655 | 97 | Plus |
| 3R | 32079331 | 3R | 26642789..26643116 | 4261..4588 | 1580 | 98.8 | Plus |
| 3L | 28110227 | 3L | 21754164..21754470 | 4529..4223 | 1535 | 100 | Minus |
| 2L | 23513712 | 2L | 14618918..14619269 | 4588..4218 | 1445 | 93.3 | Minus |
| 3L | 28110227 | 3L | 19008900..19009180 | 4307..4587 | 1360 | 98.9 | Plus |
| 2R | 25286936 | 2R | 13580562..13580842 | 4588..4308 | 1360 | 98.9 | Minus |
| X | 23542271 | X | 17431414..17431689 | 4583..4308 | 1350 | 99.3 | Minus |
| 2R | 25286936 | 2R | 18045728..18046008 | 4308..4588 | 1345 | 98.6 | Plus |
| 3L | 28110227 | 3L | 9571966..9572245 | 4588..4309 | 1340 | 98.6 | Minus |
| X | 23542271 | X | 13401544..13401824 | 4308..4588 | 1330 | 98.2 | Plus |
| X | 23542271 | X | 4700451..4700732 | 4588..4307 | 1320 | 97.9 | Minus |
| 3L | 28110227 | 3L | 5537780..5538058 | 4585..4307 | 1320 | 98.2 | Minus |
| 2L | 23513712 | 2L | 1618294..1618557 | 4571..4308 | 1290 | 99.2 | Minus |
| 3R | 32079331 | 3R | 29653107..29653387 | 4588..4308 | 1285 | 97.2 | Minus |
| 3R | 32079331 | 3R | 29319885..29320138 | 4309..4562 | 1270 | 100 | Plus |
| X | 23542271 | X | 1523184..1523434 | 4557..4307 | 1255 | 100 | Minus |
| 2R | 25286936 | 2R | 15004786..15005049 | 4587..4325 | 1225 | 98.5 | Minus |
| X | 23542271 | X | 7784319..7784532 | 4550..4337 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 8707460..8707624 | 4557..4393 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 21749374..21749443 | 4588..4519 | 320 | 97.1 | Minus |
| 3L | 28110227 | 3L | 27160243..27160313 | 4299..4229 | 190 | 84.5 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23527363 | X | 8926263..8930853 | 1..4588 | 22845 | 99.9 | Plus |
| 3L | 28103327 | 3L | 12868093..12868463 | 4588..4218 | 1840 | 99.7 | Minus |
| X | 23527363 | X | 9517369..9517739 | 4218..4588 | 1825 | 99.4 | Plus |
| 3L | 28103327 | 3L | 11325622..11325991 | 4218..4587 | 1820 | 99.4 | Plus |
| X | 23527363 | X | 22554813..22555183 | 4218..4588 | 1810 | 99.1 | Plus |
| X | 23527363 | X | 21071283..21071653 | 4588..4218 | 1810 | 99.1 | Minus |
| 3L | 28103327 | 3L | 3475136..3475506 | 4218..4588 | 1810 | 99.1 | Plus |
| 3L | 28103327 | 3L | 15892496..15892868 | 4218..4588 | 1810 | 99.4 | Plus |
| 4 | 1331231 | 4 | 414815..415185 | 4588..4218 | 1810 | 99.1 | Minus |
| 2R | 25260384 | 2R | 19780740..19781109 | 4218..4587 | 1805 | 99.1 | Plus |
| 2R | 25260384 | 2R | 22350947..22351314 | 4585..4218 | 1795 | 99.1 | Minus |
| 3R | 31820162 | 3R | 28042995..28043365 | 4588..4218 | 1795 | 98.9 | Minus |
| 2L | 23513712 | 2L | 20891602..20891972 | 4588..4218 | 1795 | 98.9 | Minus |
| Y | 3410481 | Y | 993688..994052 | 4582..4218 | 1795 | 99.4 | Minus |
| 2R | 25260384 | 2R | 22361640..22362009 | 4219..4588 | 1790 | 98.9 | Plus |
| X | 23527363 | X | 5346869..5347238 | 4588..4218 | 1785 | 99.1 | Minus |
| 2R | 25260384 | 2R | 18359648..18360016 | 4586..4218 | 1785 | 98.9 | Minus |
| 3R | 31820162 | 3R | 27996306..27996673 | 4221..4588 | 1780 | 98.9 | Plus |
| 3R | 31820162 | 3R | 28538414..28538784 | 4218..4588 | 1780 | 98.6 | Plus |
| 3R | 31820162 | 3R | 13258115..13258485 | 4588..4218 | 1780 | 98.6 | Minus |
| 3L | 28103327 | 3L | 9212418..9212788 | 4588..4218 | 1780 | 98.6 | Minus |
| 2L | 23513712 | 2L | 19620712..19621078 | 4218..4584 | 1775 | 98.9 | Plus |
| X | 23527363 | X | 4800534..4800899 | 4588..4223 | 1770 | 98.9 | Minus |
| X | 23527363 | X | 7488931..7489299 | 4586..4218 | 1770 | 98.6 | Minus |
| 3R | 31820162 | 3R | 23812978..23813350 | 4588..4218 | 1770 | 99.1 | Minus |
| 2R | 25260384 | 2R | 22527008..22527378 | 4588..4218 | 1765 | 98.3 | Minus |
| X | 23527363 | X | 13438328..13438698 | 4218..4588 | 1750 | 98.1 | Plus |
| 2L | 23513712 | 2L | 14890010..14890374 | 4582..4218 | 1750 | 98.6 | Minus |
| X | 23527363 | X | 4739974..4740337 | 4581..4218 | 1745 | 98.6 | Minus |
| 2R | 25260384 | 2R | 11021135..11021504 | 4587..4218 | 1745 | 98.1 | Minus |
| 3L | 28103327 | 3L | 16487132..16487500 | 4586..4218 | 1740 | 98.1 | Minus |
| 2L | 23513712 | 2L | 13481503..13481855 | 4570..4218 | 1735 | 99.4 | Minus |
| 4 | 1331231 | 4 | 414022..414392 | 4588..4218 | 1735 | 97.8 | Minus |
| 3R | 31820162 | 3R | 30221365..30221727 | 4578..4216 | 1725 | 98.3 | Minus |
| 3R | 31820162 | 3R | 29148356..29148699 | 4218..4561 | 1720 | 100 | Plus |
| 2L | 23513712 | 2L | 4918228..4918571 | 4561..4218 | 1720 | 100 | Minus |
| X | 23527363 | X | 16944163..16944505 | 4218..4560 | 1715 | 100 | Plus |
| 3R | 31820162 | 3R | 6255575..6255929 | 4218..4572 | 1715 | 98.8 | Plus |
| 3L | 28103327 | 3L | 939832..940176 | 4562..4218 | 1710 | 99.7 | Minus |
| 2L | 23513712 | 2L | 9393566..9393910 | 4562..4218 | 1710 | 99.7 | Minus |
| 2R | 25260384 | 2R | 12825362..12825705 | 4218..4561 | 1705 | 99.7 | Plus |
| 2R | 25260384 | 2R | 17148497..17148855 | 4576..4218 | 1705 | 98.3 | Minus |
| X | 23527363 | X | 1530924..1531263 | 4218..4557 | 1700 | 100 | Plus |
| 3R | 31820162 | 3R | 13988342..13988681 | 4218..4557 | 1700 | 100 | Plus |
| 2L | 23513712 | 2L | 52181..52520 | 4218..4557 | 1700 | 100 | Plus |
| 2R | 25260384 | 2R | 22776223..22776576 | 4221..4576 | 1695 | 98.8 | Plus |
| 3L | 28103327 | 3L | 5994885..5995223 | 4556..4218 | 1695 | 100 | Minus |
| X | 23527363 | X | 19480290..19480633 | 4561..4218 | 1690 | 99.4 | Minus |
| 3R | 31820162 | 3R | 9060463..9060800 | 4218..4555 | 1675 | 99.7 | Plus |
| 3L | 28103327 | 3L | 9569085..9569422 | 4555..4218 | 1675 | 99.7 | Minus |
| X | 23527363 | X | 7711061..7711428 | 4218..4588 | 1670 | 97.5 | Plus |
| 2R | 25260384 | 2R | 17278476..17278818 | 4218..4560 | 1670 | 99.1 | Plus |
| 2R | 25260384 | 2R | 7241736..7242073 | 4218..4555 | 1660 | 99.4 | Plus |
| 3R | 31820162 | 3R | 26383620..26383947 | 4261..4588 | 1580 | 98.7 | Plus |
| Unmapped_scaffold_56 | 21045 | Unmapped_scaffold_56 | 1503..1844 | 4557..4218 | 1570 | 98.2 | Minus |
| 3L | 28103327 | 3L | 21747264..21747570 | 4529..4223 | 1535 | 100 | Minus |
| 2R | 25260384 | 2R | 13581761..13582041 | 4588..4308 | 1360 | 98.9 | Minus |
| 3L | 28103327 | 3L | 19002000..19002280 | 4307..4587 | 1360 | 98.9 | Plus |
| X | 23527363 | X | 17439512..17439787 | 4583..4308 | 1350 | 99.2 | Minus |
| 2R | 25260384 | 2R | 18046927..18047207 | 4308..4588 | 1345 | 98.5 | Plus |
| 3L | 28103327 | 3L | 9565066..9565345 | 4588..4309 | 1340 | 98.5 | Minus |
| X | 23527363 | X | 13409642..13409922 | 4308..4588 | 1330 | 98.2 | Plus |
| X | 23527363 | X | 4708549..4708830 | 4588..4307 | 1320 | 97.8 | Minus |
| 3L | 28103327 | 3L | 5530880..5531158 | 4585..4307 | 1320 | 98.2 | Minus |
| 2L | 23513712 | 2L | 1618294..1618557 | 4571..4308 | 1290 | 99.2 | Minus |
| 3R | 31820162 | 3R | 29393938..29394218 | 4588..4308 | 1285 | 97.1 | Minus |
| 3R | 31820162 | 3R | 29060716..29060969 | 4309..4562 | 1270 | 100 | Plus |
| X | 23527363 | X | 1531282..1531532 | 4557..4307 | 1255 | 100 | Minus |
| Unmapped_scaffold_56 | 21045 | Unmapped_scaffold_56 | 1234..1484 | 4307..4557 | 1255 | 100 | Plus |
| 2R | 25260384 | 2R | 15005985..15006248 | 4587..4325 | 1235 | 98.4 | Minus |
| X | 23527363 | X | 7792417..7792630 | 4550..4337 | 1070 | 100 | Minus |
| 2L | 23513712 | 2L | 14618918..14619112 | 4588..4394 | 885 | 96.9 | Minus |
| 3R | 31820162 | 3R | 8448291..8448455 | 4557..4393 | 825 | 100 | Minus |
| 2L | 23513712 | 2L | 14619111..14619269 | 4376..4218 | 795 | 100 | Minus |
| 3L | 28103327 | 3L | 21742474..21742543 | 4588..4519 | 320 | 97.1 | Minus |
| 3L | 28103327 | 3L | 27153343..27153413 | 4299..4229 | 190 | 84.5 | Minus |
| 3L | 28103327 | 3L | 27153213..27153264 | 4530..4479 | 140 | 84.6 | Minus |
Blast to na_te.dros performed 2019-03-16 18:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jockey | 5020 | jockey DMLINEJA 5020bp Derived from M22874 (g157823) (Rel. 47, Last updated, Version 5). | 4670..5007 | 4218..4556 | 1674 | 99.7 | Plus |
| jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 3105..3329 | 4221..4453 | 237 | 59.1 | Plus |
| I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 5258..5350 | 1459..1365 | 146 | 63.2 | Minus |
| Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 1194..1277 | 2020..1935 | 136 | 66.7 | Minus |
| 412 | 7567 | 412 412 7567bp | 1174..1219 | 1972..2017 | 130 | 80.9 | Plus |
| S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 1428..1505 | 4386..4462 | 126 | 64.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1134..1278 | 1000..855 | 125 | 57 | Minus |
| Tc1-2 | 1644 | Tc1-2 TC1-2 1644bp | 255..299 | 2942..2901 | 119 | 80.4 | Minus |
HL01742.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed on 2019-03-16 18:42:22 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 19:30:08 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:33:25 Download gff for
HL01742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6191-RA | 3174..3433 | 4302..4564 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:05:31 Download gff for
HL01742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6191-RA | 3174..3436 | 4302..4562 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:04 Download gff for
HL01742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6191-RA | 3177..3439 | 4302..4562 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:30:08 Download gff for
HL01742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6191-RA | 3174..3433 | 4302..4564 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:36 Download gff for
HL01742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6191-RA | 3177..3439 | 4302..4562 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:22 Download gff for
HL01742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8918165..8922731 | 1..4564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:22 Download gff for
HL01742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8918165..8922731 | 1..4564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:22 Download gff for
HL01742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8918165..8922731 | 1..4564 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:04 Download gff for
HL01742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8812198..8816764 | 1..4564 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:04 Download gff for
HL01742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8812198..8816764 | 1..4564 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:06:19 Download gff for
HL01742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8926263..8930829 | 1..4564 | 99 | | Plus |
HL01742.pep Sequence
Translation from 154 to 528
> HL01742.pep
MNRIEWESERNETKRKTQTMRVDFTSLKHDTEMNFFFKRRLLQPSGCGCG
YGCGYECGYGCGCGCANAYADFYDILLADSVGLVFEFAFAVRMAREMDRI
GLDQNESDRISAVIGTIDASARLL*
HL01742.pep Blast Records
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsec\GM19554-PA | 73 | GM19554-PA | 1..48 | 1..45 | 142 | 70.6 | Plus |
HL01742.hyp Sequence
Translation from 154 to 528
> HL01742.hyp
MNRIEWESERNETKRKTQTMRVDFTSLKHDTEMNFFFKRRLLQPSGCGCG
YGCGYECGYGCGCGCANAYADFYDILLADSVGLVFEFAFAVRMAREMDRI
GLDQNESDRISAVIGTIDASARLL*
Sequence HL01742.hyp has no blast hits.
