Clone HL01743 Report

Search the DGRC for HL01743

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:17
Well:43
Vector:pBS SK-
Associated Gene/Transcriptlaza-RA
Protein status:HL01743.pep: gold
Preliminary Size:2307
Sequenced Size:2387

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11440 2001-01-01 Release 2 assignment
CG11440 2002-06-06 Blastp of sequenced clone
CG11440 2003-01-01 Sim4 clustering to Release 3
laza 2008-04-29 Release 5.5 accounting
laza 2008-08-15 Release 5.9 accounting
laza 2008-12-18 5.12 accounting

Clone Sequence Records

HL01743.complete Sequence

2387 bp (2387 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119567

> HL01743.complete
CGCTGACACTCCAGCGGGCCAGAGGCGAACGGCTGTTTCGCAGTCGCGGG
ACAGTCGCTACCGGCAGCTCGGCAGCGATCGTCGCCTTCTCGGTCGCAGT
TGCAGTCGCAGTCGCAGTTGTAGTCACTAGCAGCGAGCTAGGTACATTCG
CCGACGATCCCAAACAAAGCGTCAGAGCGGCCCAGAGCCCGAAAGACATC
GAAACGGAGTGCGGACAAAGCCGCTAGTTCGTGGTTTGCTCTGCCCGCTG
CCATTGGTTCGGTTCACGGTCTGCAAAAGGCGGTGCAGAGCGACGGCCAG
CTGACTGACTGACGGCTGTTAGCCGAAATTCGCTAATTTCCCGCGAAGAA
AATCGCCTTTGAACCCGGTCGGAGAAGTCGTGCGCGCATTTTTCGAAAGC
GAAAATCGCAATATAAAACGCTCGGGCCGGCGTGTAAGTGCGCAATTTGT
GTGACAACCGAAAATAAAGTGAAACGAATAAACGAATGGCCACAGATACT
GGGCGTGAAACACAGAAACAAATGTACTGTCACAAAAACCAGTGCCAAGT
GTCAATGGATTGGCTTGAACCCACGCGATAAGAACGCGGCTGAAATACAT
AACTCACATTCAAGTAGCCGAAGCCATGCACACTTTCAAAAGGGGCTTCT
TTTGCTCTGATCTGAGCATACGGTATCCCTACAAGGACTGCACGATCACG
GTGCCGATGCTACTGCTCATGATGCTCCTGCTCCCGATGCTCTTCGTGGC
CGTGGTGGAGATCATGCGGATCTGCAAGCGCTTCCGCACCAGGCTCTACT
TCCGCAATCTGTGGCGCGCAGAGGCCACCTTCAGCTTCGGCTTCATAGCC
ACCTATCTCACCACCGAGCTGGCGAAGCACGCCGTCGGGCGGCTGAGGCC
GCACTTCTTCCACGGTTGCCAGCCGCGCCTCGACGATGGCAGCTCCTGCT
CGGACCTCCAGAACGCTGAGCTGTACGTGGAGCAGTTCCACTGCACTAAC
AACAACCTCTCCACGCGACAGATCCGCGAGTTGCACGTCAGTTTCCCGAG
TGCCCACAGCAGCTTGAGCTTCTATTCGATGGTCCTGCTGGCCCTCTACG
TACACGGGGTGTGGCGGGGACGAGGGGGAGTGCGAGTCCTGCGGCACGTC
CTGCAGTTCCTGCTCCTTATGGCTGCCCTCTGCGTTTCCCTGAGCCGCGT
AGCCGACTACTGGCACCACTGGTCCGACGTCCTGGCCGGCGCCCTCCTTG
GAGTGACCTATGCCGCCATCACAGCTGCCTACGTGGGTAACCTATTGCGG
CGGCAGACCAGCTCCACCGGCAGAATCCCGCCCTCCTTGAACTACAGCCA
CCACCTGCACCACCAGCTAATGGCGGACAACAATAACTCGACGGCCTCTG
CTAAGGTCCACTTCCTGGCAGCAGCTGCTTCCGCTTCAATGACCACAACG
ACGCCGCTCGACGACATCCAGGACTCCGATGTGGAGGATTCCAGGGACTG
CAGAGACTCCGAGGACTCGCACGACTCTCAGGACTCGCACGCAGAGAATG
AGGACGACAACGAGGAGGTATACAAGTCGCAAATGTCGCGTCCCGTCACT
CCGCCCACCGATCTGACCCACGTCGTCTGAGACACCAAGCTGGAAATATG
GCGGAGAGGAATAATCAGACTTATCGCCCGCCGGCTGCTATTTCCACTAT
TTTTCCATTTAGAAATCGAAGCAAACAGAAATATGTGATAAGTGCGCGGC
GCACTCTTTACCTGATATGCCAATGTCCACCCCCACACTCCTCCGGCGAT
TTTCGAAATCCAAAGCGATCAATCGGTTGTGCAACTTCTATGCCGATCCG
GGAAATTGTTTCGGCCTTCAACGGCTTATTGCTCGATGGCGATTACGAGA
ATTTCGGCTATGGGTGAGTATCTCGCCAAAAGTATCTGCCGCTGATATTG
CAAGGCCGGATCGAACCGCAGTATCTCGGCGGAGCTACTGGCTCCGCGCT
AGCTACTTGTTTGTTTGTAAACAATACCGCAGTCACGTCGCAGTCGCCGC
TGCCGCTTTTGAAGTGCCCAGCCCGCCAACGTGGAGCTCCAGCTCCCAAT
CAGCTGCGACAATCTCTGGACAGCGACGCCGACTGCTGCGCCTTGCGGCT
GATAGTGCATAAAAATAATAAATAATAATAAATGCCGCGCTTATGGCTGC
ACAGACACGGAATACACTCGCATGAGAGGGGGATTTATGAACAAATCAAT
TAAGTCGAGTTTAATTTTATTATTTGTTTTATGTTAAATATGTTTGGCTA
CCGACAGATTTTAAGGCTTACTCTAAGTGTTTGCTCTACAGGCTGAATAA
ATGTTTATTGCCCAAGTGAAAAAAAAAAAAAAAAAAA

HL01743.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
laza-RA 2368 laza-RA 1..2368 1..2368 11840 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22447725..22450092 2368..1 11825 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:27:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22458815..22461183 2369..1 11845 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22451915..22454283 2369..1 11845 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:25:31 has no hits.

HL01743.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:26:49 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22447725..22450092 1..2368 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:11:38 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 1..1005 626..1630 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:31:19 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 1..1005 626..1630 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:10:42 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 1..1005 626..1630 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:21:22 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 1..1005 626..1630 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:50 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 1..1005 626..1630 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:01:21 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 1..2368 1..2368 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:31:19 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 1..2368 1..2368 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:42 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 1..2316 53..2368 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:21:23 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 1..2368 1..2368 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:50 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
laza-RA 1..2316 53..2368 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:26:49 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22458816..22461183 1..2368 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:26:49 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22458816..22461183 1..2368 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:26:49 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22458816..22461183 1..2368 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:42 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22451916..22454283 1..2368 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:55:15 Download gff for HL01743.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22451916..22454283 1..2368 100   Minus

HL01743.hyp Sequence

Translation from 625 to 1629

> HL01743.hyp
MHTFKRGFFCSDLSIRYPYKDCTITVPMLLLMMLLLPMLFVAVVEIMRIC
KRFRTRLYFRNLWRAEATFSFGFIATYLTTELAKHAVGRLRPHFFHGCQP
RLDDGSSCSDLQNAELYVEQFHCTNNNLSTRQIRELHVSFPSAHSSLSFY
SMVLLALYVHGVWRGRGGVRVLRHVLQFLLLMAALCVSLSRVADYWHHWS
DVLAGALLGVTYAAITAAYVGNLLRRQTSSTGRIPPSLNYSHHLHHQLMA
DNNNSTASAKVHFLAAAASASMTTTTPLDDIQDSDVEDSRDCRDSEDSHD
SQDSHAENEDDNEEVYKSQMSRPVTPPTDLTHVV*

HL01743.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
laza-PA 334 CG11440-PA 1..334 1..334 1761 100 Plus
CG11426-PA 340 CG11426-PA 63..291 5..223 498 43.5 Plus
CG11438-PB 341 CG11438-PB 34..293 4..258 486 40.1 Plus
CG11438-PA 341 CG11438-PA 34..293 4..258 486 40.1 Plus
wun-PA 300 CG8804-PA 35..273 4..226 483 40.9 Plus

HL01743.pep Sequence

Translation from 625 to 1629

> HL01743.pep
MHTFKRGFFCSDLSIRYPYKDCTITVPMLLLMMLLLPMLFVAVVEIMRIC
KRFRTRLYFRNLWRAEATFSFGFIATYLTTELAKHAVGRLRPHFFHGCQP
RLDDGSSCSDLQNAELYVEQFHCTNNNLSTRQIRELHVSFPSAHSSLSFY
SMVLLALYVHGVWRGRGGVRVLRHVLQFLLLMAALCVSLSRVADYWHHWS
DVLAGALLGVTYAAITAAYVGNLLRRQTSSTGRIPPSLNYSHHLHHQLMA
DNNNSTASAKVHFLAAAASASMTTTTPLDDIQDSDVEDSRDCRDSEDSHD
SQDSHAENEDDNEEVYKSQMSRPVTPPTDLTHVV*

HL01743.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23463-PA 331 GF23463-PA 1..331 1..334 1137 74.3 Plus
Dana\GF13080-PA 377 GF13080-PA 109..347 4..226 498 39.7 Plus
Dana\GF10980-PA 345 GF10980-PA 65..290 5..220 497 45 Plus
Dana\GF10978-PA 335 GF10978-PA 34..253 4..224 492 43.9 Plus
Dana\GF11822-PA 347 GF11822-PA 114..344 4..218 453 43.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13182-PA 337 GG13182-PA 1..337 1..334 1468 90.6 Plus
Dere\GG10557-PA 372 GG10557-PA 107..350 4..231 509 40.5 Plus
Dere\GG16256-PA 341 GG16256-PA 34..295 4..258 481 39.8 Plus
Dere\GG16258-PA 340 GG16258-PA 63..297 5..229 465 43.7 Plus
Dere\GG23436-PA 351 GG23436-PA 117..348 5..218 394 39.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14815-PA 385 GH14815-PA 1..323 1..311 919 64.2 Plus
Dgri\GH21309-PA 380 GH21309-PA 119..380 4..253 487 40 Plus
Dgri\GH16694-PA 345 GH16694-PA 67..297 5..225 480 41 Plus
Dgri\GH16692-PA 348 GH16692-PA 34..263 4..224 460 39.8 Plus
Dgri\GH20575-PA 365 GH20575-PA 129..365 1..218 444 43.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
laza-PA 334 CG11440-PA 1..334 1..334 1761 100 Plus
CG11426-PA 340 CG11426-PA 63..291 5..223 498 43.5 Plus
CG11438-PB 341 CG11438-PB 34..293 4..258 486 40.1 Plus
CG11438-PA 341 CG11438-PA 34..293 4..258 486 40.1 Plus
wun-PA 300 CG8804-PA 35..273 4..226 483 40.9 Plus
wun-PB 379 CG8804-PB 114..352 4..226 483 40.9 Plus
wun-PC 364 CG8804-PC 114..344 4..219 464 40.9 Plus
wun2-PB 246 CG8805-PB 12..243 5..218 457 40.8 Plus
wun2-PA 350 CG8805-PA 116..347 5..218 457 40.8 Plus
CG11425-PA 305 CG11425-PA 39..257 5..218 361 39.9 Plus
CG11437-PA 305 CG11437-PA 35..274 1..223 317 34.7 Plus
CG12746-PE 363 CG12746-PE 161..292 78..210 171 34.1 Plus
CG12746-PD 363 CG12746-PD 161..292 78..210 171 34.1 Plus
CG12746-PB 363 CG12746-PB 161..292 78..210 171 34.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13921-PA 361 GI13921-PA 1..313 1..310 931 66.4 Plus
Dmoj\GI11380-PA 340 GI11380-PA 34..264 4..224 505 44.8 Plus
Dmoj\GI19743-PA 298 GI19743-PA 35..298 4..253 498 38.2 Plus
Dmoj\GI19768-PA 375 GI19768-PA 143..372 6..218 477 42.9 Plus
Dmoj\GI11383-PA 345 GI11383-PA 68..298 5..225 458 44.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23307-PA 333 GL23307-PA 1..286 1..281 766 61.3 Plus
Dper\GL16886-PA 306 GL16886-PA 35..276 4..231 494 42.1 Plus
Dper\GL23165-PA 343 GL23165-PA 63..315 5..231 470 42.2 Plus
Dper\GL17588-PA 372 GL17588-PA 135..369 4..218 436 40.8 Plus
Dper\GL23143-PA 328 GL23143-PA 34..250 4..224 394 37.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11006-PA 333 GA11006-PA 1..286 1..281 1129 78 Plus
Dpse\GA21332-PA 386 GA21332-PA 115..356 4..231 494 41.7 Plus
Dpse\GA21332-PC 306 GA21332-PC 35..276 4..231 488 41.7 Plus
Dpse\GA11005-PA 343 GA11005-PA 34..265 4..224 471 41.6 Plus
Dpse\GA10999-PA 343 GA10999-PA 63..315 5..231 470 42.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22093-PA 337 GM22093-PA 1..337 1..334 1621 95 Plus
Dsec\GM22448-PA 340 GM22448-PA 63..298 5..230 516 43.1 Plus
Dsec\GM22445-PA 341 GM22445-PA 34..293 4..258 494 39.7 Plus
Dsec\GM20603-PA 372 GM20603-PA 107..345 4..226 493 39.7 Plus
Dsec\GM21120-PA 350 GM21120-PA 115..347 4..218 409 40.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12067-PA 343 GD12067-PA 1..343 1..334 1522 93.9 Plus
Dsim\GD15031-PA 340 GD15031-PA 63..298 5..230 515 43.1 Plus
Dsim\GD10076-PA 372 GD10076-PA 107..345 4..226 499 40.1 Plus
Dsim\GD15029-PA 341 GD15029-PA 34..293 4..258 497 39.7 Plus
Dsim\GD10653-PA 350 GD10653-PA 115..347 4..218 413 40.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13711-PA 340 GJ13711-PA 1..290 1..279 933 71.2 Plus
Dvir\GJ18026-PA 378 GJ18026-PA 115..362 4..237 491 39.8 Plus
Dvir\GJ11638-PA 337 GJ11638-PA 59..289 5..225 487 41.5 Plus
Dvir\GJ11635-PA 345 GJ11635-PA 34..312 4..277 479 38.3 Plus
Dvir\GJ18273-PA 332 GJ18273-PA 86..312 5..216 431 43.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17452-PA 349 GK17452-PA 1..275 1..267 964 74.2 Plus
Dwil\GK16761-PA 362 GK16761-PA 80..310 5..225 491 44.8 Plus
Dwil\GK21745-PA 385 GK21745-PA 118..359 4..226 481 40.8 Plus
Dwil\GK16759-PA 364 GK16759-PA 34..276 4..224 480 40.2 Plus
Dwil\GK21557-PA 361 GK21557-PA 123..358 4..218 418 41 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19508-PA 334 GE19508-PA 1..334 1..334 1566 91.6 Plus
Dyak\GE22302-PA 369 GE22302-PA 104..346 4..230 510 40.2 Plus
Dyak\GE23017-PA 341 GE23017-PA 34..293 4..258 504 40.4 Plus
Dyak\GE23019-PA 340 GE23019-PA 63..298 5..230 468 40.6 Plus
Dyak\GE19506-PA 340 GE19506-PA 63..298 5..230 463 40.3 Plus