Clone HL02234 Report

Search the DGRC for HL02234

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:22
Well:34
Vector:pBS SK-
Associated Gene/TranscriptCG16884-RA
Protein status:HL02234.pep: gold
Preliminary Size:1539
Sequenced Size:1402

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16884 2001-01-01 Release 2 assignment
CG16884 2001-10-10 Blastp of sequenced clone
CG16884 2008-04-29 Release 5.5 accounting
CG16884 2008-08-15 Release 5.9 accounting
CG16884 2008-12-18 5.12 accounting

Clone Sequence Records

HL02234.complete Sequence

1402 bp (1402 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061007

> HL02234.complete
AGTGATTCTACAATCCTTCCACAGTCTATTTCGCTGTTACTGAGTTGCTT
CCTTGGCAAGTCCCATTAGACTCCACAATGAAAGTATTCATCTGCTTAGC
CGCTCTGCTGGTGGCCTCCGCCTGCGCCAGCAAAACCGAGGGTGAGAAGG
TGCCGCTGGAGAAGAAGCTGGACAAGCGCGGCCTGCTCGATCTGGGCTAC
GGCTACGGTCATGCTGGTCTGGACACCGGCTACCTGGGACATGGTTCCAT
CTCCGGCCACGGAAGCTACGGACATGGCTACGGACTGACCGGATACTCCG
CACCCGCTGCCGTCGCCGTGGGCCACAGTGGTCCCGCGATCGCCGTTGGA
CACACTGCTCCCGCCGTCGCTGTCCACCACGCTCCCGCCCCCTATGTGAT
CAGCAAGCAGGCCGATGTGCACAAGACCATCACCATCACCAAGGGAATCC
CAGTGCCCGTGCATGTGGACCGCCCCTATCCCGTCGTCCATGAGAAGCGC
GTGCCCGTCGAAGTTAAGGTGCCCGTGCCCCAGCCCTACGAAGTCATCCG
CAAGGTGCCCGTGACCGTTAAGGAGTACGTCAAGGTGCCCGTGCCAGTGC
CCCAGCCCTACGAAGTGATCCGTCACGAGAAGGTGCCCGTCCATGTGCCC
GTCGATCGCCCAGTGCCCGTTGAGGTGCCCAGGCCCTACCCCGTGCCAGT
GGCCAAGCCCTACCCTGTCTACGTGGAGAAGGCCGTCAATGTCCAGGTGC
CCGTGCATGTGGATCGTCCCTACCCCGTCTACGTGAAGGTGCCCGTGGTG
TCCCACTCCGTGGTCAAGCACGCACCCACCGTTGCCGTCAGCAGCTACCC
TGTTAGCGCCATTGGCCACGATGCCACCGTCTACTCCGACCACCATGGTT
ACCACAAGTAAGCGGACGGAATGGACCGGAAGCAGGCGAATCTATTGGAG
CGAGCGGACTTAATGGAAATGAGCCGAAGGATATCTAGCAACATTTTCAA
TTATCTTCCCCACTCTCTCCACCTGTCGGCCTTCCTTTCCAAAACCGAGC
GCAGAAGCAAACTCTTAAAATACCCCCTGGAAGTCAAACTTCCGCCCTGC
CACACTCTCTGTAGCTGATAAGAACCCCCAAGATGAAACAAGCAATGCCT
TTTGTAAATTATTTCCAATCCAGCCATCCAATGGAAGCCATTGTGCTGGG
CCAAGAACTCCAGGTTTAGGATAAATACCAGCTAACTGTTTGTAAATTTC
GCCATTTATGAACAGTTTAGCTGGCCAAGTTTATCAGTGAAAGGTTTCGG
CGCACAATGAATTGAATGGATAATAAGAACAGAAATATCTATGTGAAAAT
CTATTAAGGACAAATAAAATAAAATGTATAAAATAAAAAAAAAAAAAAAA
AA

HL02234.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-RA 1675 CG16884-RA 186..1572 1..1387 6935 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13943516..13944810 1384..90 6475 100 Minus
chr2L 23010047 chr2L 13946157..13946206 50..1 250 100 Minus
chr2L 23010047 chr2L 13945849..13945887 89..51 195 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:27:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13944753..13946050 1387..90 6490 100 Minus
2L 23513712 2L 13947398..13947447 50..1 250 100 Minus
2L 23513712 2L 13947089..13947127 89..51 195 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13944753..13946050 1387..90 6490 100 Minus
2L 23513712 2L 13947398..13947447 50..1 250 100 Minus
2L 23513712 2L 13947089..13947127 89..51 195 100 Minus
Blast to na_te.dros performed 2019-03-16 13:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 117..171 1324..1378 113 67.3 Plus

HL02234.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:16:56 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13943541..13944810 90..1359 100 <- Minus
chr2L 13945849..13945887 51..89 100 <- Minus
chr2L 13946157..13946206 1..50 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:11:50 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 1..834 78..911 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:42:27 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 1..834 78..911 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:33:14 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 1..834 78..911 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:11:20 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 1..834 78..911 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:11:53 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 1..834 78..911 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:24:43 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 28..1411 1..1384 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:42:27 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 26..1409 1..1384 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:33:14 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 30..1413 1..1384 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:11:20 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 28..1411 1..1384 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:53 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 30..1413 1..1384 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:16:56 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13944756..13946050 90..1384 100 <- Minus
2L 13947089..13947127 51..89 100 <- Minus
2L 13947398..13947447 1..50 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:16:56 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13944756..13946050 90..1384 100 <- Minus
2L 13947089..13947127 51..89 100 <- Minus
2L 13947398..13947447 1..50 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:16:56 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13944756..13946050 90..1384 100 <- Minus
2L 13947089..13947127 51..89 100 <- Minus
2L 13947398..13947447 1..50 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:33:14 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13944756..13946050 90..1384 100 <- Minus
arm_2L 13947089..13947127 51..89 100 <- Minus
arm_2L 13947398..13947447 1..50 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:47:40 Download gff for HL02234.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13944756..13946050 90..1384 100 <- Minus
2L 13947089..13947127 51..89 100 <- Minus
2L 13947398..13947447 1..50 100   Minus

HL02234.pep Sequence

Translation from 77 to 910

> HL02234.pep
MKVFICLAALLVASACASKTEGEKVPLEKKLDKRGLLDLGYGYGHAGLDT
GYLGHGSISGHGSYGHGYGLTGYSAPAAVAVGHSGPAIAVGHTAPAVAVH
HAPAPYVISKQADVHKTITITKGIPVPVHVDRPYPVVHEKRVPVEVKVPV
PQPYEVIRKVPVTVKEYVKVPVPVPQPYEVIRHEKVPVHVPVDRPVPVEV
PRPYPVPVAKPYPVYVEKAVNVQVPVHVDRPYPVYVKVPVVSHSVVKHAP
TVAVSSYPVSAIGHDATVYSDHHGYHK*

HL02234.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15609-PA 277 GF15609-PA 1..277 1..277 1057 91.8 Plus
Dana\GF15610-PA 281 GF15610-PA 4..226 1..255 315 45.1 Plus
Dana\GF13116-PA 330 GF13116-PA 1..255 1..240 236 36.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10171-PA 277 GG10171-PA 1..277 1..277 1302 96.4 Plus
Dere\GG10172-PA 280 GG10172-PA 71..238 104..272 256 50.9 Plus
Dere\GG22201-PA 328 GG22201-PA 1..253 1..240 250 39.2 Plus
Dere\GG10173-PA 373 GG10173-PA 79..209 116..234 186 50 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20491-PA 338 GH20491-PA 1..261 1..240 245 37.7 Plus
Dgri\GH10609-PA 306 GH10609-PA 5..134 117..234 163 48.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-PA 277 CG16884-PA 1..277 1..277 1478 100 Plus
CG16885-PA 270 CG16885-PA 9..238 7..272 382 41.8 Plus
CG30101-PA 328 CG30101-PA 1..272 1..258 343 36.9 Plus
CG16886-PB 358 CG16886-PB 66..246 100..262 316 44.6 Plus
CG16886-PA 373 CG16886-PA 66..246 100..262 316 44.6 Plus
CG16886-PB 358 CG16886-PB 135..299 100..259 285 43.8 Plus
CG16886-PA 373 CG16886-PA 135..299 100..259 285 43.8 Plus
CG16886-PB 358 CG16886-PB 151..316 88..250 261 40.6 Plus
CG16886-PA 373 CG16886-PA 151..316 88..250 261 40.6 Plus
CG30101-PA 328 CG30101-PA 180..317 103..248 241 42.9 Plus
CG16886-PA 373 CG16886-PA 182..368 101..276 211 37.2 Plus
CG16886-PB 358 CG16886-PB 182..357 101..265 200 37.8 Plus
CG10953-PB 278 CG10953-PB 15..222 61..259 199 30.8 Plus
CG10953-PA 278 CG10953-PA 15..222 61..259 199 30.8 Plus
CG16886-PB 358 CG16886-PB 73..194 134..264 196 44.2 Plus
CG16886-PA 373 CG16886-PA 73..194 134..264 196 44.2 Plus
CG33299-PC 172 CG33299-PC 19..157 59..234 182 33.9 Plus
CG33299-PB 193 CG33299-PB 40..178 59..234 182 33.9 Plus
CG10953-PB 278 CG10953-PB 126..276 75..248 166 29.3 Plus
CG10953-PA 278 CG10953-PA 126..276 75..248 166 29.3 Plus
CG30457-PA 189 CG30457-PA 7..176 75..264 145 30.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17398-PA 277 GI17398-PA 1..277 1..277 813 76 Plus
Dmoj\GI21035-PA 328 GI21035-PA 3..255 1..240 277 39.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21068-PA 286 GL21068-PA 1..286 1..277 985 88.5 Plus
Dper\GL21070-PA 285 GL21070-PA 5..210 3..243 266 43.5 Plus
Dper\GL10668-PA 309 GL10668-PA 1..229 1..240 223 38.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14194-PA 286 GA14194-PA 1..286 1..277 985 88.5 Plus
Dpse\GA14195-PA 285 GA14195-PA 5..210 3..243 266 43.5 Plus
Dpse\GA15650-PA 337 GA15650-PA 1..259 1..240 239 36.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15027-PA 277 GM15027-PA 1..277 1..277 1340 99.3 Plus
Dsec\GM19988-PA 328 GM19988-PA 1..253 1..240 250 39.2 Plus
Dsec\GM15034-PA 156 GM15034-PA 4..150 1..184 148 38.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22028-PA 237 GD22028-PA 1..237 1..277 842 80.9 Plus
Dsim\GD22029-PA 255 GD22029-PA 51..218 104..272 260 51.5 Plus
Dsim\GD25483-PA 328 GD25483-PA 1..253 1..240 250 39.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18077-PA 286 GJ18077-PA 1..286 1..277 853 75.5 Plus
Dvir\GJ18078-PA 457 GJ18078-PA 92..218 117..243 254 60.5 Plus
Dvir\GJ21962-PA 335 GJ21962-PA 116..257 101..240 242 52 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15111-PA 282 GK15111-PA 1..282 1..277 922 82.6 Plus
Dwil\GK15112-PA 286 GK15112-PA 4..229 1..255 223 44 Plus
Dwil\GK21891-PA 330 GK21891-PA 1..257 1..240 211 36.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25267-PA 277 GE25267-PA 1..277 1..277 1336 98.6 Plus
Dyak\GE25278-PA 270 GE25278-PA 4..238 1..272 286 40.7 Plus
Dyak\GE14199-PA 331 GE14199-PA 1..253 1..240 251 39.2 Plus

HL02234.hyp Sequence

Translation from 77 to 910

> HL02234.hyp
MKVFICLAALLVASACASKTEGEKVPLEKKLDKRGLLDLGYGYGHAGLDT
GYLGHGSISGHGSYGHGYGLTGYSAPAAVAVGHSGPAIAVGHTAPAVAVH
HAPAPYVISKQADVHKTITITKGIPVPVHVDRPYPVVHEKRVPVEVKVPV
PQPYEVIRKVPVTVKEYVKVPVPVPQPYEVIRHEKVPVHVPVDRPVPVEV
PRPYPVPVAKPYPVYVEKAVNVQVPVHVDRPYPVYVKVPVVSHSVVKHAP
TVAVSSYPVSAIGHDATVYSDHHGYHK*

HL02234.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-PA 277 CG16884-PA 1..277 1..277 1478 100 Plus
CG16885-PA 270 CG16885-PA 9..238 7..272 382 41.8 Plus
CG30101-PA 328 CG30101-PA 1..272 1..258 343 36.9 Plus
CG16886-PB 358 CG16886-PB 66..246 100..262 316 44.6 Plus
CG16886-PA 373 CG16886-PA 66..246 100..262 316 44.6 Plus
CG16886-PB 358 CG16886-PB 135..299 100..259 285 43.8 Plus
CG16886-PB 358 CG16886-PB 151..316 88..250 261 40.6 Plus
CG30101-PA 328 CG30101-PA 180..317 103..248 241 42.9 Plus
CG16886-PB 358 CG16886-PB 182..357 101..265 200 37.8 Plus
CG16886-PB 358 CG16886-PB 73..194 134..264 196 44.2 Plus