Clone HL02811 Report

Search the DGRC for HL02811

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:28
Well:11
Vector:pBS SK-
Associated Gene/TranscriptCG1092-RA
Protein status:HL02811.pep: full length peptide match
Preliminary Size:1605
Sequenced Size:1398

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1092 2001-01-01 Release 2 assignment
CG1092 2001-11-09 Blastp of sequenced clone
CG1092 2008-04-29 Release 5.5 accounting
CG1092 2008-08-15 Release 5.9 accounting
CG1092 2008-12-18 5.12 accounting

Clone Sequence Records

HL02811.complete Sequence

1398 bp (1398 high quality bases) assembled on 2001-11-09

GenBank Submission: AY070866

> HL02811.complete
CTCAAGTCTTGCAATCGGCGCATCCGTAGCGCTTATTCTGTTGATGTTGA
CTGGTTCAGGGCATTGCCAAGTGGGATACGTGCGGCACCTGTCGGAGCTG
CGGATAAGGGAACTTGAAAAATTGTCGGTTCGTATACAGGGCTCCATCAA
CACCGAAAAGTATGCCTGCGAGAGCTATTTCGACTACGTCTGTAGCCGCA
ATCGACCCCTCTTTTCGATCATGGGACACATGCCGCAAATGGGCGATCTT
ATGCAGTTGCTGACCGAGCTGCAGAACGATCCAGAGCCATTCGAGGCTAA
GCAGAAGACGCTGGACTTCTTCATCTCCTGCAACGTGCACCACGCGCTGG
AAGACTGCTATCGTGAGACCTATGAGTATTTCAAGCCACTTTTCGGGTAT
ATAGTTACAAAAAACATGCTCAATGGAGAATCCCACGAGCTGGATGACTT
TCTGGGCATTTTGGACCGCTTCGTCGTCAGGTTTCAGAAGGACAGAGAGT
CGAATCCCATTCTCAGCAAGCTGGCCACGTATAAGCAGAAATTTAAAACG
CCGCGAGTCTACTTCCATGCTAGAGACCTGAGCCGGGAGTACAAGGACCT
GCGGATCTACCGGGAGAGCTACGAACACAACGTTCGCAATCTGGAGCAGC
ACAGAAAACTGAATTCAACATACGAATTGGGGGTTCAGCGCACCATGCTG
GATTGGAGCATGTACCTCTTTCAGAGCCGCAACAAGCCCATGTCCTACTT
CTACTCCACGTTTACGGTCCATTTGTACATGATGCTTTTTAATAGTCTGG
AGCGTCAGCGTGATTTCACGCGGTTTCGCGAAGATGTGGAGTGTTTAAGG
CTGCCGCAGTTCGTTAATGTTCTGGATGAGGCCAGAATGCTGGCTGTGAT
CTACTTAAAGAGCTTCCGAGCGGCCTGGATAGACTACAGCGCCTGGATCA
ACTCGCCTCCACAGAACAGTGGGATATACGATCAGGAAAATGGCGTCCTT
CAAAAGTACCATCTTGACAACAAGCGTATATTTTTTACTCTTTACGCTCA
GAACTTCTGTGAGTTTGGGAAGGATCTGGCCGAGCATGTCTTCTATCTGG
GCCTTAAACAGAACAAGGACTTTTACGACATATACTCTTGTGGATTCCAA
ACGGAAAACCCTATGACTTGTGTTTAAAAGATCAAGACCATTTCTACCAT
ATATTTAGTTTACGAGATACAATAAAAGCAATAACATTCTCATAAAGGTG
TACAAACCATTTGAAAAAAATGGCTTTCACTAAAAAACAAGCGAAGTTAA
GATACCCAAATATCAGATACCCGTTACTCAGCTAGTGAAAGAGCAAACGA
GAAATTTCTTCCATATCGATTGAAGTTGGGAAAAAAAAAAAAAAAAAA

HL02811.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092.b 1608 CG1092.b 30..1425 1..1396 6965 99.9 Plus
CG1092.a 1816 CG1092.a 238..1633 1..1396 6965 99.9 Plus
CG1092-RA 1816 CG1092-RA 238..1633 1..1396 6965 99.9 Plus
CG1092.b 1608 CG1092.b 1534..1581 1311..1358 150 87.5 Plus
CG1092.a 1816 CG1092.a 1742..1789 1311..1358 150 87.5 Plus
CG1092-RA 1816 CG1092-RA 1742..1789 1311..1358 150 87.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 92981..94137 224..1380 5785 100 Plus
chr3R 27901430 chr3R 92703..92927 1..225 1125 100 Plus
chr3R 27901430 chr3R 8037936..8037989 1358..1305 195 90.7 Minus
chr2L 23010047 chr2L 21996411..21996457 1311..1357 190 93.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4267260..4268432 224..1396 5850 99.9 Plus
3R 32079331 3R 4266982..4267206 1..225 1125 100 Plus
2L 23513712 2L 21997884..21997930 1311..1357 190 93.6 Plus
3R 32079331 3R 3032384..3032468 1311..1395 185 81.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4008091..4009263 224..1396 5850 99.9 Plus
3R 31820162 3R 4007813..4008037 1..225 1125 100 Plus
2L 23513712 2L 21997884..21997930 1311..1357 190 93.6 Plus
3R 31820162 3R 4009372..4009419 1311..1358 150 87.5 Plus
Blast to na_te.dros performed 2019-03-16 08:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
INE-1 611 INE-1 INE1 611bp Derived from U66884 (e1371475) (Rel. 52, Last updated, Version 6). 501..605 1373..1275 203 71.4 Minus

HL02811.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:12:45 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 92703..92926 1..224 100 -> Plus
chr3R 92982..94051 225..1294 100 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:00 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 1..1134 44..1177 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:32 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 1..1134 44..1177 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:46:38 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 9..1185 1..1177 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:11 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 1..1134 44..1177 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:36:08 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 9..1185 1..1177 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:07 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 29..1408 1..1380 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:32 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 29..1408 1..1380 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:46:38 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 213..1492 1..1280 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:11 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 29..1408 1..1380 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:36:08 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 213..1492 1..1280 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:12:45 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4266982..4267205 1..224 100 -> Plus
3R 4267261..4268416 225..1380 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:12:45 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4266982..4267205 1..224 100 -> Plus
3R 4267261..4268416 225..1380 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:12:45 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4266982..4267205 1..224 100 -> Plus
3R 4267261..4268416 225..1380 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:46:38 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 92704..92927 1..224 100 -> Plus
arm_3R 92983..94138 225..1380 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:24 Download gff for HL02811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4007813..4008036 1..224 100 -> Plus
3R 4008092..4009247 225..1380 100   Plus

HL02811.hyp Sequence

Translation from 0 to 1176

> HL02811.hyp
SSLAIGASVALILLMLTGSGHCQVGYVRHLSELRIRELEKLSVRIQGSIN
TEKYACESYFDYVCSRNRPLFSIMGHMPQMGDLMQLLTELQNDPEPFEAK
QKTLDFFISCNVHHALEDCYRETYEYFKPLFGYIVTKNMLNGESHELDDF
LGILDRFVVRFQKDRESNPILSKLATYKQKFKTPRVYFHARDLSREYKDL
RIYRESYEHNVRNLEQHRKLNSTYELGVQRTMLDWSMYLFQSRNKPMSYF
YSTFTVHLYMMLFNSLERQRDFTRFREDVECLRLPQFVNVLDEARMLAVI
YLKSFRAAWIDYSAWINSPPQNSGIYDQENGVLQKYHLDNKRIFFTLYAQ
NFCEFGKDLAEHVFYLGLKQNKDFYDIYSCGFQTENPMTCV*

HL02811.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-PD 394 CG1092-PD 4..394 1..391 2082 100 Plus
CG1092-PC 394 CG1092-PC 4..394 1..391 2082 100 Plus

HL02811.pep Sequence

Translation from 43 to 1176

> HL02811.pep
MLTGSGHCQVGYVRHLSELRIRELEKLSVRIQGSINTEKYACESYFDYVC
SRNRPLFSIMGHMPQMGDLMQLLTELQNDPEPFEAKQKTLDFFISCNVHH
ALEDCYRETYEYFKPLFGYIVTKNMLNGESHELDDFLGILDRFVVRFQKD
RESNPILSKLATYKQKFKTPRVYFHARDLSREYKDLRIYRESYEHNVRNL
EQHRKLNSTYELGVQRTMLDWSMYLFQSRNKPMSYFYSTFTVHLYMMLFN
SLERQRDFTRFREDVECLRLPQFVNVLDEARMLAVIYLKSFRAAWIDYSA
WINSPPQNSGIYDQENGVLQKYHLDNKRIFFTLYAQNFCEFGKDLAEHVF
YLGLKQNKDFYDIYSCGFQTENPMTCV*

HL02811.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18200-PA 392 GF18200-PA 18..392 3..377 1668 80 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12252-PA 394 GG12252-PA 18..394 1..377 1932 93.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19089-PA 391 GH19089-PA 20..391 8..377 1412 69.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-PD 394 CG1092-PD 18..394 1..377 2024 100 Plus
CG1092-PC 394 CG1092-PC 18..394 1..377 2024 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10851-PA 390 GI10851-PA 15..390 4..377 1408 67.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12312-PA 391 GL12312-PA 19..391 4..377 1501 74.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10643-PA 391 GA10643-PA 19..391 4..377 1508 75 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10741-PA 394 GM10741-PA 18..394 1..377 2011 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19713-PA 394 GD19713-PA 18..394 1..377 2006 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14458-PA 390 GJ14458-PA 15..390 4..377 1406 66.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25402-PA 394 GE25402-PA 18..394 1..377 1899 91.2 Plus