Clone HL02815 Report

Search the DGRC for HL02815

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:28
Well:15
Vector:pBS SK-
Associated Gene/TranscriptCG11306-RA
Protein status:HL02815.pep: gold
Preliminary Size:1632
Sequenced Size:1575

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11306 2001-01-01 Release 2 assignment
CG11306 2001-10-10 Blastp of sequenced clone
CG11306 2003-01-01 Sim4 clustering to Release 3
CG11306 2008-04-29 Release 5.5 accounting
CG11306 2008-08-15 Release 5.9 accounting
CG11306 2008-12-18 5.12 accounting

Clone Sequence Records

HL02815.complete Sequence

1575 bp (1575 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061012

> HL02815.complete
AACGGCCATCCCTAATTCGAGATAATGCAGTATTGTCAATTTACGTGTAA
TAATAATGCATCGTTGAAGAACAGCCGATAATGTTTCTGTTTCTGTTTCT
TCTCTGGTTGTTGTTATCGCTTGTGTTGGTGGCAGTACTCTCTTTCCTTT
TCCTGAGGCAATGGTTGCTTGGCCGGAAGAATAAGTTGCACACATCGTCG
GAAAATGGCATCAACGTGGGCATTTTTCACCCGTATTGCAACGCGGGTGG
CGGCGGAGAACGCGTCTTGTGGTGCGCCGTGAGAGCACTACAGGAAAAGT
ACCAGAACGCCAGGATGGTAATCTACACAGGCGACATAGACGCTTCTCCC
AATTCCATACTGCAAAAGGCCAAGAATGTCTTCAACATTGCCGTCGATAG
TGACAATGTGAAGTTCGTCTTCCTGAAGCAACGCCACTGGATCGAGGCCA
AGAACTATCCTCATTTCACTCTGCTGGGCCAGAGCATTGGATCGATGGTC
GTGGGTCTGGAGGCACTCTGCAGGTTTCCGCCCGACATCTACATCGACAC
CATGGGATACGCCTTTACGTATCCTCTGTTCCGCTACTTGGCCCAGTCCA
AGGTGGGCTGCTATGTTCACTATCCGGTTATTAGCACCGATATGCTGAAG
AGGGTTCAGCAGCGACAGATGTCGCACAACAACAAGAAGTACGTGGCGAG
GAACCCCTTTCTCACCTGGACTAAGCTTGCCTACTACCGCCTCTTCTCAA
GAATGTACAAGTGGGTTGGCTGTTGTGCTGAGACTATCATGGTGAACTCC
TCGTGGACCGAGAATCATATTCTGCAACTGTGGGATGTGCCCTTCAAAAC
ACACCGGGTTTACCCTCCGTGCGAGGTTAGTCACCTAAAGAGCCTTCAGC
ACACGGAAAAAGGCGACGAATTCATCATACTGTCTGTCGGACAGTTCCGC
CCGGAGAAAGACCATCCCCTCCAGCTGCAAGCCATATACGAGCTCCGAAC
TCTCTTGGCCCAAGACGAGGCCCTTTGGAACCAAATTAAGTTGGTTATTG
TGGGCTCCTGCCGAAATGAAGATGACTACGAGCGGTTGAAAAACATGCAG
GACCTGACAAAGCATCTGTCGCTAGAAAACAATGTGCAATTTAGTGTGAA
TGTCCCTTACGAAGACCTTCTTAAGTTGTATCAAACTGCCCACATTGGCA
TTCACACTATGTGGAACGAACATTTTGGCATCGGCATCGTCGAGTCCATG
GCTGCTGGCCTTATAATGGTGGCCCACAAGTCAGGGGGTCCTTTGCTTGA
CATTGTCGAAACTTCCGCGGGAAGTCAGAACGGATTCCTGGCTACTGACG
CCGTTGAATACGCAGAAAACATATTAAATATTATTGTTAACAACTCAGAA
ATGAACGGCATTCGAAACGCAGCCAGGGCCTCCGTGGAACGGTTTTCTGA
GCAAGAGTTTGAAAAAAACTTTCTTCGAGCTGTTTCAACGCTATTTACCA
ACAATTAAAAAATAATAGTACGCCCGCACCTAAATAAATATGCAAAGCCC
AAAAAAAAAAAAAAAAAAAAAAAAA

HL02815.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11306.a 1905 CG11306.a 101..1655 1..1555 7775 100 Plus
CG11306.c 1910 CG11306.c 106..1660 1..1555 7775 100 Plus
CG11306-RA 1704 CG11306-RA 80..1634 1..1555 7775 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21616398..21617072 753..1427 3375 100 Plus
chr3L 24539361 chr3L 21615876..21616336 292..752 2305 100 Plus
chr3L 24539361 chr3L 21615368..21615561 101..294 970 100 Plus
chr3L 24539361 chr3L 21617127..21617252 1425..1550 630 100 Plus
chr3L 24539361 chr3L 21615215..21615314 1..100 500 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21627462..21628136 753..1427 3375 100 Plus
3L 28110227 3L 21626940..21627400 292..752 2305 100 Plus
3L 28110227 3L 21626432..21626625 101..294 970 100 Plus
3L 28110227 3L 21628191..21628321 1425..1555 655 100 Plus
3L 28110227 3L 21626279..21626378 1..100 500 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21620562..21621236 753..1427 3375 100 Plus
3L 28103327 3L 21620040..21620500 292..752 2305 100 Plus
3L 28103327 3L 21619532..21619725 101..294 970 100 Plus
3L 28103327 3L 21621291..21621421 1425..1555 655 100 Plus
3L 28103327 3L 21619379..21619478 1..100 500 100 Plus
Blast to na_te.dros performed on 2019-03-16 08:12:03 has no hits.

HL02815.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:13:04 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21615215..21615314 1..100 100 -> Plus
chr3L 21615368..21615560 101..293 100 -> Plus
chr3L 21615878..21616336 294..752 100 -> Plus
chr3L 21616398..21617071 753..1426 100 -> Plus
chr3L 21617129..21617252 1427..1550 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:01 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 1..1428 81..1508 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:42:20 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 1..1428 81..1508 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:46:43 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 1..1428 81..1508 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:11:13 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 1..1428 81..1508 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:36:52 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 1..1428 81..1508 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:24:35 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 1..1550 1..1550 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:42:20 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 14..1563 1..1550 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:46:43 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 14..1563 1..1550 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:11:14 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 1..1550 1..1550 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:36:52 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 14..1563 1..1550 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:13:04 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21628193..21628316 1427..1550 100   Plus
3L 21626279..21626378 1..100 100 -> Plus
3L 21626432..21626624 101..293 100 -> Plus
3L 21626942..21627400 294..752 100 -> Plus
3L 21627462..21628135 753..1426 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:13:04 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21628193..21628316 1427..1550 100   Plus
3L 21626279..21626378 1..100 100 -> Plus
3L 21626432..21626624 101..293 100 -> Plus
3L 21626942..21627400 294..752 100 -> Plus
3L 21627462..21628135 753..1426 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:13:04 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21628193..21628316 1427..1550 100   Plus
3L 21626279..21626378 1..100 100 -> Plus
3L 21626432..21626624 101..293 100 -> Plus
3L 21626942..21627400 294..752 100 -> Plus
3L 21627462..21628135 753..1426 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:46:43 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21619379..21619478 1..100 100 -> Plus
arm_3L 21619532..21619724 101..293 100 -> Plus
arm_3L 21620042..21620500 294..752 100 -> Plus
arm_3L 21620562..21621235 753..1426 100 -> Plus
arm_3L 21621293..21621416 1427..1550 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:47:33 Download gff for HL02815.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21620042..21620500 294..752 100 -> Plus
3L 21620562..21621235 753..1426 100 -> Plus
3L 21621293..21621416 1427..1550 100   Plus
3L 21619379..21619478 1..100 100 -> Plus
3L 21619532..21619724 101..293 100 -> Plus

HL02815.pep Sequence

Translation from 80 to 1507

> HL02815.pep
MFLFLFLLWLLLSLVLVAVLSFLFLRQWLLGRKNKLHTSSENGINVGIFH
PYCNAGGGGERVLWCAVRALQEKYQNARMVIYTGDIDASPNSILQKAKNV
FNIAVDSDNVKFVFLKQRHWIEAKNYPHFTLLGQSIGSMVVGLEALCRFP
PDIYIDTMGYAFTYPLFRYLAQSKVGCYVHYPVISTDMLKRVQQRQMSHN
NKKYVARNPFLTWTKLAYYRLFSRMYKWVGCCAETIMVNSSWTENHILQL
WDVPFKTHRVYPPCEVSHLKSLQHTEKGDEFIILSVGQFRPEKDHPLQLQ
AIYELRTLLAQDEALWNQIKLVIVGSCRNEDDYERLKNMQDLTKHLSLEN
NVQFSVNVPYEDLLKLYQTAHIGIHTMWNEHFGIGIVESMAAGLIMVAHK
SGGPLLDIVETSAGSQNGFLATDAVEYAENILNIIVNNSEMNGIRNAARA
SVERFSEQEFEKNFLRAVSTLFTNN*

HL02815.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23731-PA 587 GF23731-PA 165..586 53..474 2000 86 Plus
Dana\GF24268-PA 424 GF24268-PA 2..356 44..414 156 23.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16209-PA 473 GG16209-PA 15..472 17..474 2397 95.4 Plus
Dere\GG14904-PA 424 GG14904-PA 2..356 44..414 160 22.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17189-PA 469 GH17189-PA 1..468 8..472 1867 71.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
Alg11-PB 475 CG11306-PB 1..475 1..475 2507 100 Plus
Alg11-PA 475 CG11306-PA 1..475 1..475 2507 100 Plus
Alg2-PA 424 CG1291-PA 223..356 281..414 155 30.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13955-PA 473 GI13955-PA 2..473 3..473 1933 72.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14148-PA 403 GL14148-PA 1..389 79..467 1831 83.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10904-PA 467 GA10904-PA 12..466 21..474 2114 82.9 Plus
Dpse\GA11900-PA 420 GA11900-PA 223..356 281..414 152 30.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22390-PA 473 GM22390-PA 1..472 3..474 2495 97 Plus
Dsec\GM14531-PA 424 GM14531-PA 159..356 233..414 159 27.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14979-PA 333 GD14979-PA 1..317 3..319 1698 97.2 Plus
Dsim\GD14980-PA 137 GD14980-PA 1..136 339..474 702 97.8 Plus
Dsim\GD13727-PA 424 GD13727-PA 159..356 233..414 157 27.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13737-PA 474 GJ13737-PA 2..474 3..473 1890 71 Plus
Dvir\GJ12723-PA 421 GJ12723-PA 159..356 233..414 156 26.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20298-PA 473 GK20298-PA 1..470 8..475 2014 75.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19778-PA 651 GE19778-PA 198..650 22..474 2381 94.9 Plus
Dyak\GE23039-PA 651 GE23039-PA 198..650 22..474 2328 94.7 Plus
Dyak\GE20359-PA 424 GE20359-PA 159..356 233..414 154 27.1 Plus

HL02815.hyp Sequence

Translation from 80 to 1507

> HL02815.hyp
MFLFLFLLWLLLSLVLVAVLSFLFLRQWLLGRKNKLHTSSENGINVGIFH
PYCNAGGGGERVLWCAVRALQEKYQNARMVIYTGDIDASPNSILQKAKNV
FNIAVDSDNVKFVFLKQRHWIEAKNYPHFTLLGQSIGSMVVGLEALCRFP
PDIYIDTMGYAFTYPLFRYLAQSKVGCYVHYPVISTDMLKRVQQRQMSHN
NKKYVARNPFLTWTKLAYYRLFSRMYKWVGCCAETIMVNSSWTENHILQL
WDVPFKTHRVYPPCEVSHLKSLQHTEKGDEFIILSVGQFRPEKDHPLQLQ
AIYELRTLLAQDEALWNQIKLVIVGSCRNEDDYERLKNMQDLTKHLSLEN
NVQFSVNVPYEDLLKLYQTAHIGIHTMWNEHFGIGIVESMAAGLIMVAHK
SGGPLLDIVETSAGSQNGFLATDAVEYAENILNIIVNNSEMNGIRNAARA
SVERFSEQEFEKNFLRAVSTLFTNN*

HL02815.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11306-PB 475 CG11306-PB 1..475 1..475 2507 100 Plus
CG11306-PA 475 CG11306-PA 1..475 1..475 2507 100 Plus
CG1291-PA 424 CG1291-PA 223..356 281..414 155 30.9 Plus