Clone HL02883 Report

Search the DGRC for HL02883

Clone and Library Details

Library:HL
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:28
Well:83
Vector:pBS SK-
Associated Gene/TranscriptCG1129-RA
Protein status:HL02883.pep: gold
Preliminary Size:1963
Sequenced Size:1715

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1129 2001-01-01 Release 2 assignment
CG1129 2001-10-10 Blastp of sequenced clone
CG1129 2003-01-01 Sim4 clustering to Release 3
CG1129 2008-04-29 Release 5.5 accounting
CG1129 2008-08-15 Release 5.9 accounting
CG1129 2008-12-18 5.12 accounting

Clone Sequence Records

HL02883.complete Sequence

1715 bp (1715 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061013

> HL02883.complete
CCAGCTCGGTTTTTATTTACTTTCCTGCAAGTGCATCCAACCAGAAGCAC
AAAGGTTCTTATCACGAAAAAAGACAATTCCAAAAACAACAACAAGGAAA
TAGATAGCGCAACAAGTTGTTTGACCGCTGAAACGGAATCTCGTTGTACG
GAGAAAGTCTCGAGAACTTTAAGGTGTGACGTGTCGCTCGCTTACGGACT
ATAGAAACCGGAGAACGGAAAGGAGGCGGAAGCGGAAGCGGAGAAGTGAT
GTGTGGAAATCCAGCTGTGGGAAACGGGACGAGGGCGTTGATTCTGGTCG
GTGGTTATGGGACCCGGCTGCGACCCCTGACCCTCAGCACGCCCAAGCCA
CTGGTGGAGTTTGCCAATAAGCCGATTCTTCTCCACCAACTGGAGGCACT
CGTCGATGCGGGATGTCGTCAGGTTATTTTAGCCGTCAGCTATCGAGCCG
AGCAAATGGAAAAGGAGCTTAAAGTCGAAGCCAAGAAACTGGGCGTGGAA
TTGATCTTCTCACACGAGACGGAACCCCTGGGAACAGCTGGACCTCTGGC
CCTAGCAAAAACGATTTTAGCAGCCAGCTCAGAGCCATTTTTCGTGCTCA
ATTCGGACGTTATATGCGATTTTCCATTTAAACAACTAGTGCAATTCCAT
TGTAATCACGGAAAAGAAGGCACAATTGTTGTCACAAAGGTCGAAGAACC
ATCCAAATACGGAGTTGTGCTGTACGATGAGAACGGCTGTATAAAAAACT
TTATTGAAAAGCCACAAGAGTTCGTTAGCAATAAGATCAATGCCGGCATT
TACATCTTTAATCCCTCCGTGCTTGACCGGATCGAAGTTAAGCCCACATC
AATAGAGAAGGAGGTGTTCCCTGAAATGACGCAGCAACAGGAGTTGTATG
CAATGGATTTAACTGGATTCTGGATGGACATCGGACAGCCAAAAGACTTC
CTAACCGGCATGTGTCTGTATCTAAGCTCGCTGCGCCAGAAGCAATCCCC
CAAGCTGTACACAGGCCCTGGAGTGGTGGGCAACGTGTTGGTGGATCCCA
CGGCCAAAATCGGCGAGGGTTGTCGCATAGGGCCTAATGTAACCATTGGA
CCGGACGTGGTCATCGAGGATGGCGTGTGCATTAAGCGCTCGACCATCCT
CAAAGGCGCCATCGTTCGCTCACACTCATGGCTGGACTCCTGCATTGTCG
GTTGGCGTTCTACAGTTGGCCGTTGGGTTCGCATCGAAGGCATCACCGTG
CTAGGCGAGGATGTAATCGTGAAGGATGAGCTCTACATTAATGGAGGCCA
GGTCTTGCCCCATAAAAGCATTGCGGCCAGTGTCCCAGAACCGCAGATCA
TTATGTGAGGCGGTGGCCCAAATCATAAATTGTAAATACAATCTATTTTT
GTTCAGTTCCGCCGTTTCGGTATTCTATAAAGGTGCCTTTTGCTGAACTG
CTCTCACCTACGATTTGCAATATTGACACTATGAAAAAAAAGAATAACAT
TTCCAGCAGTTAGCGTTGCTAACTATTTATAAACGCCAGCTCTTTCTCCT
TCCCTGGCGAAGGGGGAAAAACTGACTTATAGTTTAAGCTTAATCGCGTT
AGTTGAACGTTTTTGTACTTTGATAAGCGAAGCATTAGTTATACTCCTAA
AATTCTATACGTTAGTCAAATATATTACATACGTATTTAAAAAATTAAAA
AAAAAAAAAAAAAAA

HL02883.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-RA 1700 CG1129-RA 1..1700 1..1700 8500 100 Plus
CG1129.a 1743 CG1129.a 70..1743 27..1700 8370 100 Plus
CG1129-RB 1922 CG1129-RB 246..1919 27..1700 8370 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 640982..641721 957..1696 3700 100 Plus
chr3R 27901430 chr3R 639932..640470 420..958 2695 100 Plus
chr3R 27901430 chr3R 639365..639674 115..424 1550 100 Plus
chr3R 27901430 chr3R 639215..639304 27..116 450 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:28:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4815286..4816029 957..1700 3720 100 Plus
3R 32079331 3R 4814236..4814774 420..958 2695 100 Plus
3R 32079331 3R 4813669..4813978 115..424 1550 100 Plus
3R 32079331 3R 4813519..4813608 27..116 450 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4556117..4556860 957..1700 3720 100 Plus
3R 31820162 3R 4555067..4555605 420..958 2695 100 Plus
3R 31820162 3R 4554500..4554809 115..424 1550 100 Plus
3R 31820162 3R 4554350..4554439 27..116 450 100 Plus
Blast to na_te.dros performed 2019-03-16 17:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
G2 3102 G2 G2 3102bp 170..235 820..885 114 63.6 Plus

HL02883.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:15:58 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 639050..639075 1..26 100 -> Plus
chr3R 639215..639304 27..116 100 -> Plus
chr3R 639367..639672 117..422 100 -> Plus
chr3R 639935..640469 423..957 100 -> Plus
chr3R 640983..641721 958..1696 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:12:05 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 1..1110 249..1358 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:42:21 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 1..1110 249..1358 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:53:57 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RB 1..1110 249..1358 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:11:15 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 1..1110 249..1358 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:39 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 1..1110 249..1358 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:24:37 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 1..1696 1..1696 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:42:21 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 1..1696 1..1696 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:53:57 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 20..1715 1..1696 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:11:15 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 1..1696 1..1696 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:39 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 20..1715 1..1696 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:58 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4813354..4813379 1..26 100 -> Plus
3R 4813519..4813608 27..116 100 -> Plus
3R 4813671..4813976 117..422 100 -> Plus
3R 4814239..4814773 423..957 100 -> Plus
3R 4815287..4816025 958..1696 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:58 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4813354..4813379 1..26 100 -> Plus
3R 4813519..4813608 27..116 100 -> Plus
3R 4813671..4813976 117..422 100 -> Plus
3R 4814239..4814773 423..957 100 -> Plus
3R 4815287..4816025 958..1696 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:58 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4813354..4813379 1..26 100 -> Plus
3R 4813519..4813608 27..116 100 -> Plus
3R 4813671..4813976 117..422 100 -> Plus
3R 4814239..4814773 423..957 100 -> Plus
3R 4815287..4816025 958..1696 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:53:57 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 639076..639101 1..26 100 -> Plus
arm_3R 639241..639330 27..116 100 -> Plus
arm_3R 639393..639698 117..422 100 -> Plus
arm_3R 639961..640495 423..957 100 -> Plus
arm_3R 641009..641747 958..1696 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:47:34 Download gff for HL02883.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4554502..4554807 117..422 100 -> Plus
3R 4555070..4555604 423..957 100 -> Plus
3R 4556118..4556856 958..1696 100   Plus
3R 4554185..4554210 1..26 100 -> Plus
3R 4554350..4554439 27..116 100 -> Plus

HL02883.pep Sequence

Translation from 248 to 1357

> HL02883.pep
MCGNPAVGNGTRALILVGGYGTRLRPLTLSTPKPLVEFANKPILLHQLEA
LVDAGCRQVILAVSYRAEQMEKELKVEAKKLGVELIFSHETEPLGTAGPL
ALAKTILAASSEPFFVLNSDVICDFPFKQLVQFHCNHGKEGTIVVTKVEE
PSKYGVVLYDENGCIKNFIEKPQEFVSNKINAGIYIFNPSVLDRIEVKPT
SIEKEVFPEMTQQQELYAMDLTGFWMDIGQPKDFLTGMCLYLSSLRQKQS
PKLYTGPGVVGNVLVDPTAKIGEGCRIGPNVTIGPDVVIEDGVCIKRSTI
LKGAIVRSHSWLDSCIVGWRSTVGRWVRIEGITVLGEDVIVKDELYINGG
QVLPHKSIAASVPEPQIIM*

HL02883.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18913-PA 371 GF18913-PA 1..371 1..369 1876 96 Plus
Dana\GF13377-PA 438 GF13377-PA 3..431 12..361 403 28.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12578-PA 369 GG12578-PA 1..369 1..369 1908 98.4 Plus
Dere\GG22341-PA 438 GG22341-PA 3..431 12..361 396 28.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23007-PA 371 GH23007-PA 1..371 1..369 1827 93 Plus
Dgri\GH22966-PA 438 GH22966-PA 3..431 12..361 409 28 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-PE 369 CG1129-PE 1..369 1..369 1919 100 Plus
CG1129-PD 369 CG1129-PD 1..369 1..369 1919 100 Plus
CG1129-PA 369 CG1129-PA 1..369 1..369 1919 100 Plus
CG1129-PB 369 CG1129-PB 1..369 1..369 1919 100 Plus
CG8207-PA 438 CG8207-PA 3..431 12..361 386 27.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10243-PA 371 GI10243-PA 1..371 1..369 1837 94.1 Plus
Dmoj\GI18780-PA 161 GI18780-PA 1..141 1..141 617 86 Plus
Dmoj\GI18813-PA 161 GI18813-PA 1..141 1..141 617 86 Plus
Dmoj\GI18453-PA 438 GI18453-PA 3..431 12..361 400 27.7 Plus
Dmoj\GI18791-PA 86 GI18791-PA 1..69 210..278 346 89.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21618-PA 371 GL21618-PA 1..371 1..369 1863 95.1 Plus
Dper\GL11863-PA 438 GL11863-PA 3..431 12..361 410 28.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10892-PA 371 GA10892-PA 1..371 1..369 1863 95.1 Plus
Dpse\GA20898-PA 438 GA20898-PA 3..431 12..361 410 28.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10777-PA 369 GM10777-PA 1..369 1..369 1929 99.2 Plus
Dsec\GM20127-PA 438 GM20127-PA 3..431 12..361 393 28.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19749-PA 202 GD19749-PA 1..194 1..194 982 96.9 Plus
Dsim\GD19750-PA 132 GD19750-PA 1..132 238..369 681 99.2 Plus
Dsim\GD25606-PA 438 GD25606-PA 3..431 12..361 388 28.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11048-PA 371 GJ11048-PA 1..371 1..369 1812 92.5 Plus
Dvir\GJ21538-PA 436 GJ21538-PA 3..429 12..361 402 27.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12822-PA 371 GK12822-PA 1..371 1..369 1850 94.9 Plus
Dwil\GK17960-PA 434 GK17960-PA 3..427 12..361 408 28.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25436-PA 369 GE25436-PA 1..369 1..369 1915 98.1 Plus
Dyak\GE14141-PA 438 GE14141-PA 3..431 12..361 402 28.8 Plus

HL02883.hyp Sequence

Translation from 248 to 1357

> HL02883.hyp
MCGNPAVGNGTRALILVGGYGTRLRPLTLSTPKPLVEFANKPILLHQLEA
LVDAGCRQVILAVSYRAEQMEKELKVEAKKLGVELIFSHETEPLGTAGPL
ALAKTILAASSEPFFVLNSDVICDFPFKQLVQFHCNHGKEGTIVVTKVEE
PSKYGVVLYDENGCIKNFIEKPQEFVSNKINAGIYIFNPSVLDRIEVKPT
SIEKEVFPEMTQQQELYAMDLTGFWMDIGQPKDFLTGMCLYLSSLRQKQS
PKLYTGPGVVGNVLVDPTAKIGEGCRIGPNVTIGPDVVIEDGVCIKRSTI
LKGAIVRSHSWLDSCIVGWRSTVGRWVRIEGITVLGEDVIVKDELYINGG
QVLPHKSIAASVPEPQIIM*

HL02883.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-PE 369 CG1129-PE 1..369 1..369 1919 100 Plus
CG1129-PD 369 CG1129-PD 1..369 1..369 1919 100 Plus
CG1129-PA 369 CG1129-PA 1..369 1..369 1919 100 Plus
CG1129-PB 369 CG1129-PB 1..369 1..369 1919 100 Plus
CG8207-PA 438 CG8207-PA 3..431 12..361 386 27.9 Plus